[maker-devel] MAKER just won't quit?

[Carson Holt]

It's perfectly safe to kill.

If you are constantly getting FAIL in the datastore index, then something
is wrong.  If you are capturing the jobs STDERR, try looking for the term
ERROR or FATAL for a better explanation as to why it's failing and send
the error to me.

Thanks,
Carson


On 7/9/13 2:47 PM, "Jacqueline R M Doyle" <jmdoyle at purdue.edu> wrote:

>Hello Maker Developers!
>
>I have a quick question... I've been using MAKER to annotate a genome (it
>has been running for about 6 days with 48 cpus).  Many of my contigs have
>failed, surely because most of them are smaller than the 10 kb limit I
>set, which is fine.  My concern is that although I've set tries = 2, the
>index log seems to indicate that MAKER is on its fourth try for some of
>the contigs (see attached).  Is is safe to shut MAKER down, or are there
>clean-up steps at the end of the annotation process that need to be
>allowed to occur?  Oh, and I'm using MAKER 2.28.
>
>Best, Jacqueline
>
>