[maker-devel] InterProScan v5

[Carson Holt]

All those tools were written for InterProScan 4.  We have plans to update
everything for InterProScan 5 sometime in the near future. Some will have to
be dropped or rewritten completely, while other like  ipr_update_gff and
iprscan2gff3 are both relatively simple and I could probably have those
included with the next MAKER release (current release is 2.28).  That would
be about 3 weeks from now.

--Carson



From:  "Li, Michael" <Michael.Li3 at AGR.GC.CA>
Date:  Thursday, July 18, 2013 3:06 PM
To:  "'maker-devel at yandell-lab.org'" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] InterProScan v5

My department has maker.2-10 and InterProScan 5R6 installed on a cluster for
users. However, I noticed that maker¹s iprscan_batch, iprscan_wrap,
ipr_update_gff and iprscan2gff3 are not compatible with this new version of
IPR. Is there a workaround available or is the script easy to modify to suit
the new version?
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