[maker-devel] Doubts in the synthesis part of MAKER

[Sitaram Rajaraman]

Hello MAKER developers, 
			I'm Sitaram, working as a Bioinformatician at the University of Helsinki. We are trying out MAKER as part of a gene prediction/annotation pipeline and have some doubts regarding this. In the synthesis step in the paper, I find it a bit hard to visualise how the hints are generated from the various sources and the scores are calculated. It would be nice if you could throw some light on this. Also if you could point to the particular .Pm file which contains the actual source code, it would be  convenient as there quite a lot of source code and debugging the whole set is bit cumbersome.

Regards,

-- 
Sitaram Rajaraman,
Plant Stress Research Group,
Dept of Biosciences,
University of Helsinki.