[maker-devel] Sharing benchmarks of maker

[Carlos A. Canchaya]

Hi,

I've just install maker2 in our server and run a first test with our data.  The input was about 30 000 sequences (9.6 Mb) and it was run in just one server with 32 processors for 36 hours) with mpich2. Our server has 250 Gb of memory and cpus of 2,4 Gb. The test was simple because it only ran repeatmasker and SNAP. Considering that we would like to use other gene prediction/annotation tools available in MAKER, I wonder if you can share some of your benchmarks in order to know if we could scale up pretty well to our production cluster in order to annotate our 1.6 Gb draft genome

Best,

Carlos
 
Carlos A. Canchaya, PhD
IPP Research Fellow
Department of Biochemistry, Genetics and Immunology
Faculty of Biology
Campus Universitario
University of Vigo
36310 Vigo
Spain

http://darwin.uvigo.es/~ccanchaya/
email: canchaya at uvigo.es
Tel :  +34 986 130048
Fax:  +34 986 812556
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