[maker-devel] Why are some complete gene predictions not present in the final results?

[Hung-Wei Hsu]

Hi MAKER developers,

I was exploiting MAKER to perform gene prediction and annotation on my
contigs.
I used Artemis to examine gff and found some CDS with complete structure
were absent in the final results.
They are really predicted and annotated on the ref genome.
I'm wondering if they were discarded due to overlapping with another CDS.
How can I preserve these CDS?
Thanks a lot in advance.

Hung-Wei
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