[maker-devel] Non-standard genetic code

[Carson Holt]

It's not possible yet.  It is one of the things we have on a list to do.
It's not a small task either to make the necessary changes to the code, as
the codon usage affects blastx alignments, exonerate protein2genome
alignments, ab initio gene prediction, gene extension/boundary polishing,
and UTR addition.  So the changes have to go into many many locations.


Thanks,
Carson




On 13-05-08 11:44 AM, "Daniil Alexeyevsky" <daa at fbb.msu.ru> wrote:

>Hi,
>
>I want to use MAKER to annotate organism with non-standard genetic
>code. (It only has UGA stop-codon, UAA and UAG code glutamine).
>
>Is it possible to use MAKER in this case? If I am bound to editing some
>source codes, could you please point me where to look?
>
>With best regards,
>-- Daniil
>