[maker-devel] re-annotation

[Kymberlie Hallsworth-Pepin]

Hi Carson,

I am trying to take an existing gene set and update it using new proteins. 
I have the gene set in gff3 format - validated as ok - and have put it in
the model_gff line. I set the protein db to the new database and I set the 
map_forward=1 to maintain naming, but the output has no gene predictions 
in it. I have tried setting keep_preds both 0 and 1. I have put the gff 
file in both the pred_gff and model_gff and just in the pred_gff field, 
but I still don't get any predictions maintained. Can you tell me what I 
might be missing ?

thanks
Kym


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