[maker-devel] Contigs failing - could not make datastore directory

[Carson Holt]

Let me know what you find.  With some failures it's hard to identify the
problem especially with long running processes, which is why I made MAKER
restartable, so you can at least get completion by just launching again.

--Carson


On 10/4/13 3:10 AM, "Felix Bemm" <felix.bemm at uni-wuerzburg.de> wrote:

>Hi,
>
>I have a problem with Contigs failing like this:
>
>examining contents of the fasta file and run log
>ERROR: could not make datastore directory
>--> rank=11, hostname=r5n04
>ERROR: Failed while examining contents of the fasta file and run log
>ERROR: Chunk failed at level:0, tier_type:0
>FAILED CONTIG:MA_gen_v8.05_c31675
>
>There is enough space available on both the storage device and the tmp
>device that is being used. The datastore log files looks like this:
>
>MA_gen_v8.05_c1149              FAILED
>MA_gen_v8.05_c1153              FAILED
>MA_gen_v8.05_c1154              FAILED
>MA_gen_v8.05_c1155              FAILED
>MA_gen_v8.05_c1156              FAILED
>
>Since there is no datastore for this contigs, I can not provide any more
>informationen. Approx. 1/3 of the contigs were annotated, after that
>maker started to fail. It kept running for a while and finishing some of
>the contigs in the second or third try like this:
>
>MA_gen_v8.05_c4443		FAILED
>MA_gen_v8.05_c4443		FAILED
>MA_gen_v8.05_c4443	MA_gen_v8.05M_datastore/A7/9B/MA_gen_v8.05_c4443/	START
>ED
>MA_gen_v8.05_c4443	MA_gen_v8.05M_datastore/A7/9B/MA_gen_v8.05_c4443/
>FINISHED
>
>Any ideas what can cause this problems?
>
>Best regards
>Felix
>
>-- 
>Felix Bemm
>Department of Bioinformatics
>University of Würzburg, Germany
>Tel: +49 931 - 31 83696
>Fax: +49 931 - 31 84552
>felix.bemm at uni-wuerzburg.de
>
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