[maker-devel] keep_preds parameter

[dhivya arasappan]

Hello,

I’m looking for a little more explanation about keep_preds parameter.  The documentation says that it is a threshold to add unsupported gene predictions. Along with some other changes, I set keep_preds=1 and saw a huge jump in the number of genes I was getting. Is setting this parameter to 1 equivalent to saying, include all predicted genes in my output, even if they are not supported by my set or protein data?  Is there a way to tell from my output which genes are unsupported and which are not?  Also, are the only two options for this parameter 0 and 1?

Thanks
dhivya