[maker-devel] Repeat Library Construction : Exclusion of gene fragments
Muriel Gros-Balthazard
muriel.grosb at gmail.com
Mon Apr 28 02:35:25 MDT 2014
Hello !
I ran RepeatModeler and seperates the output into ModelerID.lib and
Modelerunknown.lib as it is explained in the protocole.
In total, I have about 600 sequences in these two files.
I now want to exclude gene fragments.
I downloaded in UniProtDB all the plant protein sequences and plan to
use blastx.
However, I don't know which parameter I should use for blastx,
especially, the -e value ?
Thanks a lot for your help,
Muriel GB
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