[maker-devel] Repeat Library Construction : Exclusion of gene fragments

Muriel Gros-Balthazard muriel.grosb at gmail.com
Mon Apr 28 02:35:25 MDT 2014


Hello !

I ran RepeatModeler and seperates the output into ModelerID.lib and 
Modelerunknown.lib as it is explained in the protocole.
In total, I have about 600 sequences in these two files.

I now want to exclude gene fragments.
I downloaded in UniProtDB all the plant protein sequences and plan to 
use blastx.
However, I don't know which parameter I should use for blastx, 
especially, the -e value ?
Thanks a lot for your help,

Muriel GB




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