[maker-devel] FW: protein2genome gene models

Carson Holt carsonhh at gmail.com
Wed Apr 30 08:55:12 MDT 2014


Make sure you're using the current version of MAKER.  It works on eukaryotes
as well.

--Carson


From:  Carson Holt <carson.holt at genetics.utah.edu>
Date:  Wednesday, April 30, 2014 at 8:53 AM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] FW: protein2genome gene models



From: Sivaranjani Namasivayam <ranjani at uga.edu>
Date: Wednesday, April 30, 2014 at 8:45 AM
To: "maker-devel-bounces at yandell-lab.org"
<maker-devel-bounces at yandell-lab.org>
Subject: protein2genome gene models

Hi,



I want to examine the gene models predicted diectly from protein data for my
genome.

MAKER has an option for this in the maker_opts.ctl file: protein2genome =1 ,
but it says for prokaryotes only.



Will this not work for eukaryotes? Is it because of introns?



Thanks,

Ranjani
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