[maker-devel] Mapping gene names

Shaun Jackman sjackman at gmail.com
Tue Feb 25 17:06:03 MST 2014


Hi,

I’m annotating a genome using a closely related genome from Genbank, using
the .frn (RNA) and .faa (protein) files from Genbank as evidence to
annotate my genome. I’ve run Maker, and the annotation seems to have worked
well. Is it possible to map the names of the genes from the related species
to my annotation? I see the *map_forward* option, which applies to the
*model_gff* parameter. Is there a similar option for *est* and *protein*?

*maker_opts.ctl*

est=NC_123456.frn
protein=NC_123456.faa
est2genome=1
protein2genome=1

Thanks,
Shaun
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