[maker-devel] maker output

[Rebecca Harris]

Hi,

I'm running maker on a cluster and am having some problems with the run
ending prematurely. I would like to know if there is a straightforward way
to figure out whether maker has completed. I've tried: 1) counting the
number of run.log files in the datastore directly, and 2) counting the
instances of "FINISHED" in the master_datastore_index.log. These numbers
are inconsistent. I have 200,000 contigs in my fasta file - do I expect
200,000 run.log files? I've had to restart maker a few times - it appears
that maker is appending to the master_datastore_index.log, as I find
multiple instances of the same contig being finished.

Thanks!

Cheers,
Rebecca
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