[maker-devel] Re-using repeat masking in SNAP training

[Aaron Liston]

I am following the tutorial for training SNAP, and it works fine.  
However, the tutorial instructions have MAKER repeat the repeat  
masking. To avoid this, I concatenated my gff files from the first  
round of annotation and used maker_gff=round1.gff and rm_pass=1  but  
at the end of the process, the repeat annotations were not there. Any  
suggestions?  Thanks, Aaron