[maker-devel] Maker not predicting many genes

[Valero Jimenez, Claudio]

Dear list,

I'm trying to annotate a fungal genome, and I'm surprised that Maker does not predict many genes (3697). I have trained SNAP and followed all the tutorials available. Ab initio predictors are able to predict between 8000-10000 genes. It is something that I have in the configuration file that is wrong?? I attach the ops file and the SOBA summary of the annotation.

Regards,

Claudio


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