[maker-devel] I am a PhD candidate at NMSU and have a question about maker2

[Daniel Ence]

Hi Joe, 

Will you upload your control files and data at this URL?
http://weatherby.genetics.utah.edu/cgi-bin/mwas/bug.cgi?guest_id=169

Also, what version of MAKER and blast are you using? And which file are you using for the known arabidopsis gene?

I've copied this email to the maker-development list, which is a really good resource for trouble-shooting MAKER issues. 

Thanks,
Daniel


Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Mark Yandell
Sent: Friday, February 21, 2014 7:32 PM
To: Daniel Ence
Subject: FW: I am a PhD candidate at NMSU and have a question about maker2

Mark Yandell
Professor of Human Genetics
H.A. & Edna Benning Presidential Endowed Chair
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
ph:801-587-7707

________________________________________
From: Joseph Said [joesaid at nmsu.edu]
Sent: Friday, February 21, 2014 5:18 PM
To: Mark Yandell
Subject: I am a PhD candidate at NMSU and have a question about maker2

Dear Dr. Yandell,

I am a molecular biologist at NMSU. I am trying to use maker2 with the cotton genome, and search an Arabidopsis gene against it. I think there is a problem with the blast component because zero results are returned. I tried troubleshooting by searching a known gene and still returned zero results. Is this a common problem maybe with the pipeline? I would appreciate any ideas you might have to help me.

Thank you,
Joe

Sent from my iPad