[maker-devel] change program locations in maker_exe

[USFS Ion PGM]

Hi Carson,

Thank you - that did it, I didn’t have them in the PATH.  All working now.

Cheers,
Jon

On Feb 26, 2014, at 10:38 AM, Carson Holt <carson.holt at genetics.utah.edu> wrote:

> MAKER first looks inside of .../maker/exe/ for any executables.  Then it
> uses the systems ‘which’ command to identify executables in your PATH
> environmental variable.  If MAKER is not finding the one you want, then
> you can either put the program in the .../maker/exe/ folder (I.e. create
> .../maker/exe/bin/  and then put soft links to the executables you want to
> be used first), or you can rearrange the order of paraameters in your PATH
> environmental variable so that ‘which <program_name>’ returns the location
> you want.  If MAKER is always leaving the locations to those programs
> empty, it is because you need to add them to your PATH environmental
> variable.
> 
> Thanks,
> Carson
> 
> On 2/26/14, 9:21 AM, "USFS Ion PGM" <nextgen.usfs at gmail.com> wrote:
> 
>> Hello,
>> I was wondering if there is a way to make permanent changes to the
>> maker_exe.ctl file, as it seems on the install that maker didn’t find the
>> gene mark or pro build locations correctly, which means that I have to
>> manually edit the maker_exe.ctl file every time and add that information.
>> Where can I modify this permanently so that the maker -CTL command
>> creates the appropriate maker_exe file?  Thank you.
>> 
>> - Jon
>> 
>> 
>