[maker-devel] New MAKER release

[Carson Holt]

URLs can be manually edited in the .../maker/src/locations file. I’ve also updated that file in the latest MAKER download. to point to the new RepBase URL.

Thanks,
Carson

From: Joanna Kelley <jokelley at stanford.edu<mailto:jokelley at stanford.edu>>
Date: Tuesday, February 11, 2014 at 2:00 PM
To: Carson Holt <carson.holt at genetics.utah.edu<mailto:carson.holt at genetics.utah.edu>>
Subject: Re: [maker-devel] New MAKER release

Hi Carson,

The RepBase step is failing, it seems to be looking for the incorrect version, where do I change the code to solve that?

Thanks,
Joanna

 Downloading RepBase...
--2014-02-11 12:59:38--  http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/repeatmaskerlibraries-20130422.tar.gz
Resolving www.girinst.org... 66.201.49.247
Connecting to www.girinst.org<http://www.girinst.org>|66.201.49.247|:80... connected.
HTTP request sent, awaiting response... 401 Authorization Required
Connecting to www.girinst.org<http://www.girinst.org>|66.201.49.247|:80... connected.
HTTP request sent, awaiting response... 404 Not Found
2014-02-11 12:59:38 ERROR 404: Not Found.



ERROR: Failed installing RepBase, now cleaning installation path...
You may need to install RepBase manually.




On Tue, Feb 11, 2014 at 12:52 PM, Carson Holt <carson.holt at genetics.utah.edu<mailto:carson.holt at genetics.utah.edu>> wrote:
Hello all,

MAKER has been updated to 2.31.

There are no major new features over 2.30.  It is primarily just bug fixes, and updates to the features that were added from MAKER-P like tRNAscan support.  I also was able to remove the seg faults that sometimes happened on exit under OpenMPI.

Thanks,
Carson


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