[maker-devel] Fwd: Problem with re-annotation
Sanea Sheikh
saneasheikh at gmail.com
Thu Jan 16 03:52:29 MST 2014
Hello Carson
Here it is.
Sanea
On Tue, Jan 14, 2014 at 1:39 AM, Carson Holt <carsonhh at gmail.com> wrote:
> Hi Sanea,
>
> There are no snap calls in your results. It’s as if SNAP never even ran.
> Did you capture STDERR from your second run? If so can you send it to me.
> I just want to see if it even shows SNAP as having run in the progress
> reports.
>
> Thanks,
> Carson
>
> From: Sanea Sheikh <saneasheikh at gmail.com>
> Date: Monday, January 13, 2014 at 2:17 AM
> To: <maker-devel at yandell-lab.org>
> Subject: [maker-devel] Problem with re-annotation
>
> Hello
>
> I am using Maker to annotate a genome for which I only have EST data and
> some protein data. I ran Maker once using this EST and protein data
> (est2genome=1, protein2genome=1). I had the Maker output. I combined all
> the GFF files for all the contigs. I used the combined GFF file to train
> SNAP which gave me a .hmm file. Now I modified the Maker opts control file.
> I provided the hmm file in snap_hmm. I set est2genome=0 and
> protein2genome=0. I ran Maker again assuming that now I have trained the
> gene predictor and I would have better annotations. But now the output file
> that I get does not have Maker annotation. I have attached the control
> files and the output file for the re-run so you can have a look and let me
> know what I am doing wrong in order to re-annotate the genome using the
> output from the previous run.
>
> Sanea
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
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[saneash at milou2 re-run0]$ module load bioinfo-tools
[saneash at milou2 re-run0]$ module load maker/2.28
[saneash at milou2 re-run0]$ maker
STATUS: Parsing control files...
STATUS: Processing and indexing input FASTA files...
STATUS: Setting up database for any GFF3 input...
A data structure will be created for you at:
/gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore
To access files for individual sequences use the datastore index:
/gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_master_datastore_index.log
STATUS: Now running MAKER...
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C1
Length: 58489
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0 -pa 1
#-------------------------------#
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.0
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.1
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.2
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.3
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.4
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.5
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.6
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.7
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.8
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/te_proteins%2Efasta.mpi.10.9
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:5 current j:0
j_size:5 current j:1
j_size:5 current j:2
j_size:5 current j:3
j_size:5 current j:4
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C1.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.0
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.1
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.2
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.3
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.4
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.5
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.6
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.7
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.8
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype nucl -in /scratch/maker_I9tXTM/0/blastprep/Acrasis_EST_20130422%2Efasta.mpi.10.9
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:2 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11053%7Crhogap.for.4526-6082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4526-6082.Ar_EST_120301b_c11053%7Crhogap.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c268%7Crhogap.for.5511-6995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.5511-6995.Ar_EST_120301b_c268%7Crhogap.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2803%7Cprotein.for.6572-8321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6572-8321.Ar_EST_120301b_c2803%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18685%7C5.for.10389-12250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.10389-12250.Ar_EST_120301b_c18685%7C5.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20527%7C5.for.11857-13265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.11857-13265.Ar_EST_120301b_c20527%7C5.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c607%7C---NA---.for.12934-14282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.12934-14282.Ar_EST_120301b_c607%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.for.13964-15360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.13964-15360.Ar_EST_120301b_c10671%7Cn-acylethanolamine-hydrolyzing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17817%7C26s.for.14494-15869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.14494-15869.Ar_EST_120301b_c17817%7C26s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2291%7Cautophagy.for.15736-17754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15736-17754.Ar_EST_120301b_c2291%7Cautophagy.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17723%7Ccci.for.17326-18646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.17326-18646.Ar_EST_120301b_c17723%7Ccci.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13159%7Cair9.for.19436-20822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.19436-20822.Ar_EST_120301b_c13159%7Cair9.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11534%7Cair9.for.20126-21431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20126-21431.Ar_EST_120301b_c11534%7Cair9.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15074%7Cair9.for.20452-21494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.20452-21494.Ar_EST_120301b_c15074%7Cair9.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1253%7Cf-box.for.22970-24212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.22970-24212.Ar_EST_120301b_c1253%7Cf-box.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17132%7Calkylated.for.24491-25995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24491-25995.Ar_EST_120301b_c17132%7Calkylated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9069%7Cam193219.for.31057-32071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.31057-32071.Ar_EST_120301b_c9069%7Cam193219.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.for.33886-35415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.33886-35415.Ar_EST_120301b_c10823%7Ccr05-c1-100-012-f08-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c930%7Cprotein.for.38557-40055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38557-40055.Ar_EST_120301b_c930%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18260%7Cunq127-.for.40476-41781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.40476-41781.Ar_EST_120301b_c18260%7Cunq127-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2552%7Cprotein.for.48234-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48234-49551.Ar_EST_120301b_c2552%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2497%7Cprotein.for.48058-49397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48058-49397.Ar_EST_120301b_c2497%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1789%7Cprotein.for.48205-49551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48205-49551.Ar_EST_120301b_c1789%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18050%7Ccto.for.49972-51260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.49972-51260.Ar_EST_120301b_c18050%7Ccto.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9640%7Cmethyltransferase.for.51502-53111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.51502-53111.Ar_EST_120301b_c9640%7Cmethyltransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17917%7Ccht.for.52335-53662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.52335-53662.Ar_EST_120301b_c17917%7Ccht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.55765-57091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.55765-57091.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
flattening EST clusters
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.0
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:36 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.1
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:40 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.2
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.3
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:65 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.4
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.5
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.6
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:34 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.7
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.8
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:39 hits
doing blastx of proteins
formating database...
#--------- command -------------#
Widget::formater:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/makeblastdb -dbtype prot -in /scratch/maker_I9tXTM/0/blastprep/Naegleria_proteome%2Efasta.mpi.10.9
#-------------------------------#
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/71/F8/AR_HYBRID_130113_TINTIN_EF2ON_C1//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C1/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:30 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.for.4953-6967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.4953-6967.gi%7C284088766%7Cgb%7CEFC42427%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.for.6309-7884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6309-7884.gi%7C284083894%7Cgb%7CEFC37592%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.6219-8277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.6219-8277.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.for.15836-17505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.15836-17505.gi%7C284097098%7Cgb%7CEFC50725%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.for.24561-26053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.24561-26053.gi%7C284095290%7Cgb%7CEFC48921%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.for.25336-26753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.25336-26753.gi%7C284085158%7Cgb%7CEFC38844%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.for.26367-28540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.26367-28540.gi%7C284096842%7Cgb%7CEFC50469%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284081501%7Cgb%7CEFC35480%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.for.38104-39098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.38104-39098.gi%7C284085657%7Cgb%7CEFC39339%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.41924-44025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41924-44025.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.41960-43878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43878.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.41960-43902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41960-43902.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.41957-44109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41957-44109.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.41954-43965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.41954-43965.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.45578-47603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45578-47603.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.45440-47621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47621.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.45443-46787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-46787.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.for.45440-47594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45440-47594.gi%7C284093591%7Cgb%7CEFC47228%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.for.45443-47639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47639.gi%7C284091812%7Cgb%7CEFC45457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.45449-47648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45449-47648.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.45443-47597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.45443-47597.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.48315-49510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C1.48315-49510.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:8 now processing 0
total clusters:8 now processing 0
total clusters:8 now processing 0
total clusters:8 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:8 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:8 now processing 0
total clusters:8 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:8 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:7 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:14 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:14 now processing 0
total clusters:14 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4725-6795.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10588-12055.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12056-13157.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15926-18446.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23065-23889.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24690-25853.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26566-28340.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38273-38898.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40672-41581.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.45639-47448.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48257-49356.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.50171-51071.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55964-56891.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6418-8217.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13131-14082.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.14163-15160.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.19635-21294.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.23268-24019.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.25535-26553.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.31256-31871.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.34085-35224.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.51701-53462.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C2
Length: 117277
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:103 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:75 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:71 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:65 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:81 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:94 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:87 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:81 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:73 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:80 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C2.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:1 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c507%7Chypothetical.for.1-1394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.1-1394.Ar_EST_120301b_c507%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14990%7C---NA---.for.640-1498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.640-1498.Ar_EST_120301b_c14990%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.761-2391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.761-2391.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig47%7Ctransmembrane.for.6436-8329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.6436-8329.120301b_Contig47%7Ctransmembrane.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14084%7Cunnamed.for.7758-9064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.7758-9064.Ar_EST_120301b_c14084%7Cunnamed.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9225%7Ctransmembrane.for.8330-9700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8330-9700.Ar_EST_120301b_c9225%7Ctransmembrane.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14631%7Chydra.for.8696-9907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.8696-9907.Ar_EST_120301b_c14631%7Chydra.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3024%7Cudp-glucose.for.9676-11591.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9676-11591.Ar_EST_120301b_c3024%7Cudp-glucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig990%7Cmitochondrial.for.10856-12335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.10856-12335.120301b_Contig990%7Cmitochondrial.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1211%7Cgcn5-related.for.11805-13456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.11805-13456.Ar_EST_120301b_c1211%7Cgcn5-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16722%7Cct752454.for.13015-14306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.13015-14306.Ar_EST_120301b_c16722%7Cct752454.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig224%7Cprotein.for.15919-17709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.15919-17709.120301b_Contig224%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3881%7Cprotein.for.16047-17501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16047-17501.Ar_EST_120301b_c3881%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2433%7Cgpgc_est03437.for.17128-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17128-18491.Ar_EST_120301b_c2433%7Cgpgc_est03437.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13343%7Cdioscorea.for.17305-18618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.17305-18618.Ar_EST_120301b_c13343%7Cdioscorea.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11728%7Cpiggybac-derived.for.18145-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.18145-19476.Ar_EST_120301b_c11728%7Cpiggybac-derived.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.22621-24232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22621-24232.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12485%7Ch019c03.for.22501-23565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.22501-23565.Ar_EST_120301b_c12485%7Ch019c03.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16884%7Cheat-shocked.for.24359-25393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.24359-25393.Ar_EST_120301b_c16884%7Cheat-shocked.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.for.25415-26610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.25415-26610.Ar_EST_120301b_rep_c5131%7CsT7aVVM011J17071.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19746%7Cglycoside.for.26440-27757.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26440-27757.Ar_EST_120301b_c19746%7Cglycoside.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig676%7Cglycoside.for.26298-28164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.26298-28164.120301b_Contig676%7Cglycoside.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13860%7Cprotein.for.32010-33342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.32010-33342.Ar_EST_120301b_c13860%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c199%7Cinterferon-related.for.33113-34832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.33113-34832.Ar_EST_120301b_c199%7Cinterferon-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig826%7Cintegral.for.34950-37418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.34950-37418.120301b_Contig826%7Cintegral.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3644%7Crasgef.for.40362-42405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.40362-42405.Ar_EST_120301b_c3644%7Crasgef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2583%7Crasgef.for.39147-41164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39147-41164.Ar_EST_120301b_c2583%7Crasgef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12768%7Crasgef.for.41845-43175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.41845-43175.Ar_EST_120301b_c12768%7Crasgef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16000%7Cprotein.for.42497-43802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.42497-43802.Ar_EST_120301b_c16000%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12166%7Cdedicator.for.43827-45754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.43827-45754.Ar_EST_120301b_c12166%7Cdedicator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.for.46674-48006.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46674-48006.Ar_EST_120301b_c12629%7Cpeptidyl-prolyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4714%7Crac.for.50959-53161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50959-53161.Ar_EST_120301b_rep_c4714%7Crac.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11446%7C40s.for.51193-52314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51193-52314.Ar_EST_120301b_rep_c11446%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7175%7Crac-beta.for.51491-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51491-53136.Ar_EST_120301b_rep_c7175%7Crac-beta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17186%7Cprotein.for.52528-54217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52528-54217.Ar_EST_120301b_c17186%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17524%7Ccto.for.59145-60473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.59145-60473.Ar_EST_120301b_c17524%7Ccto.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c989%7Cprotease.for.60132-61476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60132-61476.Ar_EST_120301b_c989%7Cprotease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7983%7Cendonuclease.for.60911-62507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.60911-62507.Ar_EST_120301b_c7983%7Cendonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20027%7Cgtp-binding.for.62798-64102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62798-64102.Ar_EST_120301b_c20027%7Cgtp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18683%7Cg-protein.for.62454-63870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.62454-63870.Ar_EST_120301b_c18683%7Cg-protein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16992%7Cnovel.for.63760-65049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.63760-65049.Ar_EST_120301b_c16992%7Cnovel.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10583%7Clipase.for.68765-70207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.68765-70207.Ar_EST_120301b_c10583%7Clipase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11588%7C---NA---.for.69933-71292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.69933-71292.Ar_EST_120301b_c11588%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1963%7Cprotein.for.70510-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70510-71966.Ar_EST_120301b_c1963%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20347%7Cpeptidase.for.74316-75861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.74316-75861.Ar_EST_120301b_c20347%7Cpeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20105%7Cserine.for.73290-75800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73290-75800.Ar_EST_120301b_c20105%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13314%7Ckaan-.for.76588-77926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.76588-77926.Ar_EST_120301b_c13314%7Ckaan-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17187%7Cljna722tf.for.78662-79915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.78662-79915.Ar_EST_120301b_c17187%7Cljna722tf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14075%7Cipt.for.80654-82283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80654-82283.Ar_EST_120301b_c14075%7Cipt.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2151%7Cegf-like.for.80564-82712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80564-82712.Ar_EST_120301b_c2151%7Cegf-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15871%7Cgm-r1089.for.81864-83119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.81864-83119.Ar_EST_120301b_c15871%7Cgm-r1089.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3019%7Crcc1.for.82360-83500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82360-83500.Ar_EST_120301b_c3019%7Crcc1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18457%7Cregulator.for.82761-84301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.82761-84301.Ar_EST_120301b_c18457%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2002%7Cmitochondrial.for.84168-85833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.84168-85833.Ar_EST_120301b_c2002%7Cmitochondrial.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16158%7Cthioredoxin.for.86999-88287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.86999-88287.Ar_EST_120301b_c16158%7Cthioredoxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10238%7Ccto.for.88444-90125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.88444-90125.Ar_EST_120301b_c10238%7Ccto.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c525%7Ctranscription.for.89357-91075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.89357-91075.Ar_EST_120301b_c525%7Ctranscription.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10630%7Cpredicted.for.90701-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.90701-91993.Ar_EST_120301b_c10630%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3446%7Cwd.for.94044-95698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.94044-95698.Ar_EST_120301b_c3446%7Cwd.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2740%7Cbromodomain.for.95217-96781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95217-96781.Ar_EST_120301b_c2740%7Cbromodomain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14182%7Cwd40.for.95143-96256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.95143-96256.Ar_EST_120301b_c14182%7Cwd40.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2955%7Cwd.for.96139-98603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96139-98603.Ar_EST_120301b_c2955%7Cwd.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15897%7Cwd.for.96376-97474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.96376-97474.Ar_EST_120301b_c15897%7Cwd.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1239%7C---NA---.for.98316-99620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.98316-99620.Ar_EST_120301b_c1239%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1149%7Cbeta-galactosidase.for.101237-104546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.101237-104546.Ar_EST_120301b_c1149%7Cbeta-galactosidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18482%7C---NA---.for.103754-105055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.103754-105055.Ar_EST_120301b_c18482%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17585%7Csuppressor.for.104275-105642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.104275-105642.Ar_EST_120301b_c17585%7Csuppressor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9748%7Cphytanoyl-.for.105274-106624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.105274-106624.Ar_EST_120301b_c9748%7Cphytanoyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16625%7Cixodes.for.108291-109796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.108291-109796.Ar_EST_120301b_c16625%7Cixodes.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig957%7Cprolyl.for.111713-113469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111713-113469.120301b_Contig957%7Cprolyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c341%7Cprolyl.for.112916-114615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.112916-114615.Ar_EST_120301b_c341%7Cprolyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19609%7C60s.for.114043-115231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.114043-115231.Ar_EST_120301b_rep_c19609%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c363%7Cprotein.for.115090-116629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115090-116629.Ar_EST_120301b_c363%7Cprotein.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:52 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
total clusters:52 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:72 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:65 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:74 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:81 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:70 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:73 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:60 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:72 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:77 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9A/ED/AR_HYBRID_130113_TINTIN_EF2ON_C2//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C2/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:58 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.for.9805-11564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.9805-11564.gi%7C284094603%7Cgb%7CEFC48237%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.for.16040-17692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17692.gi%7C284083050%7Cgb%7CEFC36758%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.for.16040-17659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.16040-17659.gi%7C284096069%7Cgb%7CEFC49698%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.for.27718-29412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.27718-29412.gi%7C284091333%7Cgb%7CEFC44980%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.39144-41128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.39144-41128.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.46503-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47767.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.46503-47779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46503-47779.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.46497-47776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46497-47776.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.46491-47767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47767.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.46491-47770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47770.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.46491-47773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.46491-47773.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.51383-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51383-53046.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.50957-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50957-53136.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.50972-53136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.50972-53136.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.51365-53046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51365-53046.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.51362-53094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.51362-53094.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.52410-54205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54205.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.52797-54004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52797-54004.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.52776-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52776-53791.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.for.52410-54199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54199.gi%7C284091625%7Cgb%7CEFC45271%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.52410-54208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52410-54208.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.for.52416-54202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.52416-54202.gi%7C284097050%7Cgb%7CEFC50677%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.for.66633-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66633-67624.gi%7C284090562%7Cgb%7CEFC44213%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.66693-67995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66693-67995.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.for.66516-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66516-67624.gi%7C284090708%7Cgb%7CEFC44358%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.66690-67615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66690-67615.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.for.66618-67624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.66618-67624.gi%7C284081311%7Cgb%7CEFC35385%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.for.70396-71585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.70396-71585.gi%7C284082866%7Cgb%7CEFC36576%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.for.73129-75157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.73129-75157.gi%7C284082849%7Cgb%7CEFC36560%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.80650-81731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.80650-81731.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.for.87117-88275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.87117-88275.gi%7C284089151%7Cgb%7CEFC42810%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.for.111697-114629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.111697-114629.gi%7C284095219%7Cgb%7CEFC48850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.for.115979-117015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C2.115979-117015.gi%7C284086650%7Cgb%7CEFC40325%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:9 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:9 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:7 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:7 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:26 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.954-2217.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9875-14112.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16118-18418.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.22820-24032.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51156-52963.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.59344-62307.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68964-70007.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70132-71766.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76787-77726.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.78861-79715.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.84367-85636.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.94243-98403.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.98513-99420.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.101436-105465.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105473-106424.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115289-116429.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6631-9707.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.26497-27964.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.32196-33142.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.35149-37218.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.39346-43602.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44026-45564.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46690-47806.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.52615-54017.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.62650-64855.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.66715-67795.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.73328-75726.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80763-84101.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.87198-88087.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.88643-90875.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.90900-91793.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.108490-109596.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.111879-114429.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.116098-116885.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C4
Length: 65381
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C4.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:1 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10892%7C0082817.for.1-1025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1-1025.Ar_EST_120301b_c10892%7C0082817.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12497%7Cpl08003b1g07.for.464-1964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.464-1964.Ar_EST_120301b_c12497%7Cpl08003b1g07.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9064%7Chypothetical.for.1180-2583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.1180-2583.Ar_EST_120301b_c9064%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.for.2150-3327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.2150-3327.Ar_EST_120301b_c14018%7Cui-s-gu1-aee-p-13-0-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16392%7Ctm2.for.3881-5011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5011.Ar_EST_120301b_rep_c16392%7Ctm2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18540%7Cpredicted.for.4013-5052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4013-5052.Ar_EST_120301b_rep_c18540%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19988%7Ctm2.for.4002-4998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.4002-4998.Ar_EST_120301b_rep_c19988%7Ctm2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17214%7Ctm2.for.3986-5028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3986-5028.Ar_EST_120301b_rep_c17214%7Ctm2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15650%7Cpredicted.for.3969-4990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3969-4990.Ar_EST_120301b_rep_c15650%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7924%7Cpredicted.for.3983-5062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3983-5062.Ar_EST_120301b_rep_c7924%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6312%7Cribosomal.for.3930-4999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3930-4999.Ar_EST_120301b_rep_c6312%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4538%7Ctm2.for.3881-5023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.3881-5023.Ar_EST_120301b_rep_c4538%7Ctm2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13709%7Cintegrator.for.6912-8195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.6912-8195.Ar_EST_120301b_c13709%7Cintegrator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9675%7Cculex.for.9178-10584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9178-10584.Ar_EST_120301b_c9675%7Cculex.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c257%7Cqg_abcdi.for.9988-11249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.9988-11249.Ar_EST_120301b_c257%7Cqg_abcdi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8616%7Cclp.for.16774-18142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.16774-18142.Ar_EST_120301b_rep_c8616%7Cclp.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c673%7Ccathepsin.for.22385-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22385-24283.Ar_EST_120301b_c673%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.for.24238-25543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24238-25543.Ar_EST_120301b_c16839%7Cn-acetylglucosaminyl-phosphatidylinositol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13622%7Cpredicted.for.27404-28719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27404-28719.Ar_EST_120301b_c13622%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3407%7Cabc.for.28182-30134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28182-30134.Ar_EST_120301b_c3407%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13324%7Cpeptidase.for.29844-31104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.29844-31104.Ar_EST_120301b_c13324%7Cpeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17579%7Ccafy.for.30948-32538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.30948-32538.Ar_EST_120301b_c17579%7Ccafy.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.for.32347-33734.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.32347-33734.Ar_EST_120301b_c17883%7Cme1-0071p-a159-f12-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c321%7Crho.for.33136-34435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33136-34435.Ar_EST_120301b_c321%7Crho.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1291%7Cgolgin.for.33807-35294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.33807-35294.120301b_Contig1291%7Cgolgin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8512%7Crho.for.34096-36128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.34096-36128.Ar_EST_120301b_c8512%7Crho.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4149%7Ccathepsin.for.36731-38881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36731-38881.Ar_EST_120301b_rep_c4149%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13879%7Ccathepsin.for.36811-38313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36811-38313.Ar_EST_120301b_rep_c13879%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig493%7Cgut.for.37440-38856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37440-38856.120301b_Contig493%7Cgut.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19441%7C40s.for.37322-38430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37322-38430.Ar_EST_120301b_rep_c19441%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6027%7Ccysteine.for.36676-38177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36676-38177.Ar_EST_120301b_rep_c6027%7Ccysteine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10144%7Ccathepsin.for.37675-38749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.37675-38749.Ar_EST_120301b_rep_c10144%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12182%7Cdigestive.for.36933-38320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.36933-38320.Ar_EST_120301b_rep_c12182%7Cdigestive.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1163%7Cprotein.for.40718-42567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40718-42567.120301b_Contig1163%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.for.42267-44759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42267-44759.Ar_EST_120301b_c335%7Cglucosamine-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.for.42266-43240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42266-43240.Ar_EST_120301b_c13169%7Cglucosamine-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12559%7Cendocytosis.for.45717-47004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.45717-47004.Ar_EST_120301b_c12559%7Cendocytosis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4411%7Cfyve-type.for.46516-48423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46516-48423.Ar_EST_120301b_rep_c4411%7Cfyve-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13558%7Ccomm.for.50698-52032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50698-52032.Ar_EST_120301b_c13558%7Ccomm.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15742%7Ctrna.for.52178-53369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.52178-53369.Ar_EST_120301b_c15742%7Ctrna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16117%7Csmall.for.53247-54540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53247-54540.Ar_EST_120301b_c16117%7Csmall.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17565%7Cconserved.for.63969-65310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.63969-65310.Ar_EST_120301b_c17565%7Cconserved.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:36 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:36 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:42 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:48 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:46 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:42 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1D/10/AR_HYBRID_130113_TINTIN_EF2ON_C4//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C4/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:31 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.18520-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18520-19886.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.18535-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18535-19886.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.18538-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18538-19886.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.18802-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18802-19886.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.18508-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18508-19886.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.18466-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18466-19886.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.18511-19877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19877.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.18523-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18523-19886.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.18706-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18706-19886.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.18469-19655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18469-19655.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.18505-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18505-19886.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.18511-19886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.18511-19886.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.23211-24283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.23211-24283.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.22743-24259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.22743-24259.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.for.24093-26257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.24093-26257.gi%7C284096232%7Cgb%7CEFC49860%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.for.27429-30997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.27429-30997.gi%7C284090699%7Cgb%7CEFC44349%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.for.28112-31000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.28112-31000.gi%7C284095545%7Cgb%7CEFC49175%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284082178%7Cgb%7CEFC35938%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.for.38304-39589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.38304-39589.gi%7C284087427%7Cgb%7CEFC41097%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.for.40475-43005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.40475-43005.gi%7C284092869%7Cgb%7CEFC46509%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.41096-42963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.41096-42963.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.for.42289-45022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.42289-45022.gi%7C284096359%7Cgb%7CEFC49987%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.for.46531-48269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.46531-48269.gi%7C284090005%7Cgb%7CEFC43659%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.for.50687-52053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.50687-52053.gi%7C284087223%7Cgb%7CEFC40894%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.53422-54539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.53422-54539.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.55918-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58235.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.55918-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58208.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.55927-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58211.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.55918-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-57080.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.55963-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57080.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.55930-57101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-57101.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.55918-58214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55918-58214.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.55843-58235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55843-58235.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.55927-58559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-58559.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.55873-58295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55873-58295.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.55870-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55870-58211.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.55798-58208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55798-58208.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.55996-56951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55996-56951.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.55927-57146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57146.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.55834-58217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55834-58217.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.55921-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55921-58211.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.55930-58211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55930-58211.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.55927-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55927-57038.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.55963-57038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C4.55963-57038.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:11 now processing 0
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:11 now processing 0
...processing 0 of 17
...processing 1 of 17
...processing 2 of 17
...processing 3 of 17
...processing 4 of 17
...processing 5 of 17
...processing 6 of 17
...processing 7 of 17
...processing 8 of 17
...processing 9 of 17
...processing 10 of 17
...processing 11 of 17
...processing 12 of 17
...processing 13 of 17
...processing 14 of 17
...processing 15 of 17
...processing 16 of 17
total clusters:11 now processing 0
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 15
...processing 1 of 15
...processing 2 of 15
...processing 3 of 15
...processing 4 of 15
...processing 5 of 15
...processing 6 of 15
...processing 7 of 15
...processing 8 of 15
...processing 9 of 15
...processing 10 of 15
...processing 11 of 15
...processing 12 of 15
...processing 13 of 15
...processing 14 of 15
total clusters:7 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:7 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:15 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-825.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.2349-3127.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4180-4964.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7111-7995.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.9366-11049.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24292-26057.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.27603-30800.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.36875-38681.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.40674-42805.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50886-51853.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.53433-54340.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56120-58359.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.64168-65110.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.4080-4900.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.18665-19754.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22584-24083.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.30043-30904.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.31147-32360.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.33335-35934.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.38503-39487.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.42465-44822.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.45910-48232.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.52377-53169.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C5
Length: 131745
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:4 current j:0
j_size:4 current j:1
j_size:4 current j:2
j_size:4 current j:3
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C5.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:3 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4927%7Ccoatomer.for.1750-4580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1750-4580.Ar_EST_120301b_rep_c4927%7Ccoatomer.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c219%7Ccoatomer.for.1117-5675.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1117-5675.Ar_EST_120301b_c219%7Ccoatomer.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5068%7Cprotein.for.999-2306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.999-2306.Ar_EST_120301b_rep_c5068%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1870%7Cshort-chain.for.7529-8815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.7529-8815.Ar_EST_120301b_c1870%7Cshort-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13983%7Cglycerate.for.9016-10532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9016-10532.Ar_EST_120301b_c13983%7Cglycerate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2872%7Cglycerate.for.9011-10422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9011-10422.Ar_EST_120301b_c2872%7Cglycerate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1884%7Crho.for.9854-11280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9854-11280.Ar_EST_120301b_c1884%7Crho.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18292%7C---NA---.for.11079-12444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11079-12444.Ar_EST_120301b_c18292%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9251%7Cadenylate.for.11875-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.11875-13224.Ar_EST_120301b_c9251%7Cadenylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1113%7Cprotein.for.15259-17252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15259-17252.120301b_Contig1113%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10689%7Cendonuclease.for.16859-18277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.16859-18277.Ar_EST_120301b_c10689%7Cendonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11369%7Cphospholipase.for.21668-22878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21668-22878.Ar_EST_120301b_c11369%7Cphospholipase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18303%7Chypothetical.for.23197-24457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.23197-24457.Ar_EST_120301b_c18303%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig495%7Cprotein.for.26089-27731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26089-27731.120301b_Contig495%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c738%7Chypothetical.for.25998-27627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.25998-27627.Ar_EST_120301b_c738%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16831%7C---NA---.for.26248-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.26248-27437.Ar_EST_120301b_c16831%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3170%7Crna-binding.for.29265-30841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29265-30841.Ar_EST_120301b_c3170%7Crna-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18861%7Csplicing.for.30193-31519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.30193-31519.Ar_EST_120301b_c18861%7Csplicing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18342%7Cehahb38tr.for.31682-32618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31682-32618.Ar_EST_120301b_rep_c18342%7Cehahb38tr.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig330%7Cactin.for.31093-33168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.31093-33168.120301b_Contig330%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19138%7Chypothetical.for.33677-35187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33677-35187.Ar_EST_120301b_c19138%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9985%7Clipase.for.33305-34844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.33305-34844.Ar_EST_120301b_c9985%7Clipase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16685%7Ctranslation.for.35667-37110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35667-37110.Ar_EST_120301b_c16685%7Ctranslation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20389%7Csepticolysin.for.36823-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36823-38079.Ar_EST_120301b_rep_c20389%7Csepticolysin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7158%7Csepticolysin.for.36723-38078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36723-38078.Ar_EST_120301b_rep_c7158%7Csepticolysin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1100%7Csepticolysin.for.36741-38079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.36741-38079.120301b_Contig1100%7Csepticolysin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12800%7Cserine.for.39700-41118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39700-41118.Ar_EST_120301b_c12800%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12672%7Cserine.for.40155-41467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.40155-41467.Ar_EST_120301b_c12672%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14883%7C0156836.for.41198-42449.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.41198-42449.Ar_EST_120301b_c14883%7C0156836.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c576%7Cpeptidase.for.42583-44087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.42583-44087.Ar_EST_120301b_c576%7Cpeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14550%7Crcc1.for.46429-47518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.46429-47518.Ar_EST_120301b_c14550%7Crcc1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3172%7Cpelecinus.for.48613-50486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.48613-50486.Ar_EST_120301b_c3172%7Cpelecinus.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig705%7Cprobable.for.49720-51442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49720-51442.120301b_Contig705%7Cprobable.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17286%7C1112934329288.for.50896-52235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.50896-52235.Ar_EST_120301b_c17286%7C1112934329288.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1584%7Cmyosin.for.51678-53058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.51678-53058.Ar_EST_120301b_c1584%7Cmyosin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18785%7Criboflavin.for.52842-53791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52842-53791.Ar_EST_120301b_rep_c18785%7Criboflavin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19995%7Criboflavin.for.52637-53860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52637-53860.Ar_EST_120301b_c19995%7Criboflavin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9495%7Cperoxisome.for.53340-55004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.53340-55004.Ar_EST_120301b_c9495%7Cperoxisome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14%7Cfk506-binding.for.54242-56219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.54242-56219.Ar_EST_120301b_c14%7Cfk506-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17894%7Cbg01.for.57293-58491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.57293-58491.Ar_EST_120301b_c17894%7Cbg01.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2318%7Chermansky-pudlak.for.58366-59946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58366-59946.Ar_EST_120301b_c2318%7Chermansky-pudlak.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13264%7Cphysarum04582.for.60446-61409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60446-61409.Ar_EST_120301b_c13264%7Cphysarum04582.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig569%7Ctrehalose-6-phosphate.for.60904-62620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60904-62620.120301b_Contig569%7Ctrehalose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1192%7Chypothetical.for.74768-76995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.74768-76995.120301b_Contig1192%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c940%7C1445745_5_c15_062.for.76417-77860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.76417-77860.Ar_EST_120301b_c940%7C1445745_5_c15_062.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19216%7Ctg.for.77340-78465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.77340-78465.Ar_EST_120301b_rep_c19216%7Ctg.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8441%7Cankyrin.for.78567-80270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78567-80270.Ar_EST_120301b_c8441%7Cankyrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3062%7Cnacht.for.78319-79781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78319-79781.Ar_EST_120301b_c3062%7Cnacht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig922%7Cthioredoxin.for.81853-83382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81853-83382.120301b_Contig922%7Cthioredoxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1406%7Chx129285.for.81417-82703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.81417-82703.Ar_EST_120301b_c1406%7Chx129285.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c884%7Ccci.for.83640-85075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83640-85075.Ar_EST_120301b_c884%7Ccci.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3232%7Csimilarity.for.82705-84656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82705-84656.Ar_EST_120301b_c3232%7Csimilarity.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15594%7Csimilarity.for.83031-84107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.83031-84107.Ar_EST_120301b_c15594%7Csimilarity.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10733%7C---NA---.for.84023-85289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.84023-85289.Ar_EST_120301b_c10733%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig164%7Cmisexpression.for.86591-88318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86591-88318.120301b_Contig164%7Cmisexpression.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2393%7Chypothetical.for.86080-87393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.86080-87393.Ar_EST_120301b_c2393%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3126%7Cprotein.for.87842-89519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.87842-89519.Ar_EST_120301b_c3126%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12848%7Caldo.for.89750-91167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89750-91167.Ar_EST_120301b_c12848%7Caldo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1669%7C%28aldo.for.89843-91300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.89843-91300.Ar_EST_120301b_c1669%7C%28aldo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9784%7Chypothetical.for.90835-92394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.90835-92394.Ar_EST_120301b_c9784%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1376%7Cpredicted.for.92016-93662.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92016-93662.120301b_Contig1376%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.for.92623-93606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.92623-93606.Ar_EST_120301b_c19862%7Cicpl20102_cw46_f06.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1340%7C---NA---.for.93186-94487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.93186-94487.Ar_EST_120301b_c1340%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1082%7C---NA---.for.94235-95710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.94235-95710.Ar_EST_120301b_c1082%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig308%7Cnad.for.95110-97107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.95110-97107.120301b_Contig308%7Cnad.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14271%7Crna.for.101533-102830.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.101533-102830.Ar_EST_120301b_c14271%7Crna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15637%7Chypothetical.for.103277-104452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103277-104452.Ar_EST_120301b_c15637%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16787%7Ccchu.for.103813-105125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.103813-105125.Ar_EST_120301b_c16787%7Ccchu.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1482%7C30s.for.104418-105784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104418-105784.Ar_EST_120301b_c1482%7C30s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.for.105373-106697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105373-106697.Ar_EST_120301b_c1205%7Cmdf180_4-28dpi_hb383.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c938%7Cduo.for.105969-107823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.105969-107823.Ar_EST_120301b_c938%7Cduo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10147%7C---NA---.for.107361-108436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.107361-108436.Ar_EST_120301b_c10147%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17005%7Cfp072159.for.108422-109291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108422-109291.Ar_EST_120301b_c17005%7Cfp072159.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12429%7Csubunit.for.108615-109926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.108615-109926.Ar_EST_120301b_c12429%7Csubunit.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10392%7Canolis.for.109947-111462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.109947-111462.Ar_EST_120301b_c10392%7Canolis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16466%7Cxre.for.114425-115636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.114425-115636.Ar_EST_120301b_c16466%7Cxre.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c196%7Cankyrin.for.113280-115250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.113280-115250.Ar_EST_120301b_c196%7Cankyrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11093%7Cdomain-containing.for.115928-117488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.115928-117488.Ar_EST_120301b_c11093%7Cdomain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11883%7Cfq355161.for.118590-120174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.118590-120174.Ar_EST_120301b_c11883%7Cfq355161.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15305%7Cccif.for.120353-121637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120353-121637.Ar_EST_120301b_c15305%7Cccif.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8899%7Csumo.for.120923-122601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.120923-122601.Ar_EST_120301b_c8899%7Csumo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5398%7Cgadus.for.123283-124857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.123283-124857.Ar_EST_120301b_rep_c5398%7Cgadus.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c594%7Ccbxu.for.122875-124833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.122875-124833.Ar_EST_120301b_c594%7Ccbxu.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9877%7Cubiquitin-activating.for.126067-128042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.126067-128042.Ar_EST_120301b_c9877%7Cubiquitin-activating.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
total clusters:60 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:60 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:53 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:51 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:62 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:70 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:68 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:69 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:61 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:69 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:72 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/D4/32/AR_HYBRID_130113_TINTIN_EF2ON_C5//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C5/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:44 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.for.1013-5621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.1013-5621.gi%7C284092746%7Cgb%7CEFC46387%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.for.5064-6702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.5064-6702.gi%7C284083683%7Cgb%7CEFC37384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.for.8543-10559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.8543-10559.gi%7C284088407%7Cgb%7CEFC42071%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.for.9862-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9862-11235.gi%7C284090220%7Cgb%7CEFC43873%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.9877-11238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11238.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.for.9853-11214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9853-11214.gi%7C284083905%7Cgb%7CEFC37603%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.9874-11250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11250.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.9874-10892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-10892.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.9877-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9877-11235.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.9865-11244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9865-11244.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.9874-11241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11241.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.9955-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9955-11235.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.9874-11082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11082.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.10142-11211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.10142-11211.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.9874-11247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11247.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.9868-11307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11307.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.9874-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9874-11235.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.9868-11235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9868-11235.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.9952-11253.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.9952-11253.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.for.15309-17452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.15309-17452.gi%7C284095901%7Cgb%7CEFC49530%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.18476-19500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18476-19500.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.18125-19958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18125-19958.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.18263-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19883.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.for.18263-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19865.gi%7C284090579%7Cgb%7CEFC44230%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.18428-19476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18428-19476.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.18257-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18257-19922.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.18269-19883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19883.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.18263-19922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19922.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.for.18458-19509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18458-19509.gi%7C284090909%7Cgb%7CEFC44558%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.18263-19919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18263-19919.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.for.18269-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18269-19865.gi%7C284083998%7Cgb%7CEFC37695%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.18380-19865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.18380-19865.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.for.21409-23737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.21409-23737.gi%7C284093175%7Cgb%7CEFC46814%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.for.29978-31002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.29978-31002.gi%7C284091296%7Cgb%7CEFC44943%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.for.32411-34593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.32411-34593.gi%7C284094539%7Cgb%7CEFC48173%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.for.34706-36121.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.34706-36121.gi%7C284082502%7Cgb%7CEFC36219%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.for.35447-37131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.35447-37131.gi%7C284085459%7Cgb%7CEFC39143%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.for.39688-41618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39688-41618.gi%7C284086511%7Cgb%7CEFC40187%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.for.39691-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39691-41822.gi%7C284091530%7Cgb%7CEFC45176%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.for.39673-41822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.39673-41822.gi%7C284083230%7Cgb%7CEFC36935%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.for.49693-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.49693-51284.gi%7C284089725%7Cgb%7CEFC43381%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.for.52586-53864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.52586-53864.gi%7C284097201%7Cgb%7CEFC50828%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284081386%7Cgb%7CEFC35420%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.for.55097-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56157.gi%7C284097061%7Cgb%7CEFC50688%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.for.55097-56211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56211.gi%7C284095747%7Cgb%7CEFC49377%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.for.55097-56232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55097-56232.gi%7C284088080%7Cgb%7CEFC41746%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.for.55103-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55103-56157.gi%7C284092504%7Cgb%7CEFC46146%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.for.55094-56238.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.55094-56238.gi%7C284090684%7Cgb%7CEFC44334%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.for.58401-60770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.58401-60770.gi%7C284087392%7Cgb%7CEFC41062%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.for.60972-62488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.60972-62488.gi%7C284089364%7Cgb%7CEFC43022%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.for.62355-63987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62355-63987.gi%7C284081650%7Cgb%7CEFC35573%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.for.62271-63430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.62271-63430.gi%7C284091868%7Cgb%7CEFC45513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284082307%7Cgb%7CEFC36042%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093856%7Cgb%7CEFC47492%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085911%7Cgb%7CEFC39591%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087491%7Cgb%7CEFC41160%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284093843%7Cgb%7CEFC47479%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.for.71509-72458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72458.gi%7C284095026%7Cgb%7CEFC48658%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284090245%7Cgb%7CEFC43898%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284087527%7Cgb%7CEFC41196%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284083958%7Cgb%7CEFC37656%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284095626%7Cgb%7CEFC49256%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.71509-72455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.71509-72455.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.for.78714-80903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.78714-80903.gi%7C284085878%7Cgb%7CEFC39558%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.for.80969-83266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.80969-83266.gi%7C284093226%7Cgb%7CEFC46865%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.82819-84356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.82819-84356.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C11466181%7Cref%7CNP_066504%2E1%7C.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C11466181%7Cref%7CNP_066504%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.for.104625-105715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104625-105715.gi%7C10444216%7Cgb%7CAAG17782%2E1%7CAF288092_7.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.for.104946-106012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.104946-106012.gi%7C284096956%7Cgb%7CEFC50583%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.for.117674-118960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.117674-118960.gi%7C284084495%7Cgb%7CEFC38187%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.for.124126-128091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C5.124126-128091.gi%7C284088316%7Cgb%7CEFC41980%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:20 now processing 0
...processing 0 of 18
...processing 1 of 18
...processing 2 of 18
...processing 3 of 18
...processing 4 of 18
...processing 5 of 18
...processing 6 of 18
...processing 7 of 18
...processing 8 of 18
...processing 9 of 18
...processing 10 of 18
...processing 11 of 18
...processing 12 of 18
...processing 13 of 18
...processing 14 of 18
...processing 15 of 18
...processing 16 of 18
...processing 17 of 18
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
...processing 0 of 12
...processing 1 of 12
...processing 2 of 12
...processing 3 of 12
...processing 4 of 12
...processing 5 of 12
...processing 6 of 12
...processing 7 of 12
...processing 8 of 12
...processing 9 of 12
...processing 10 of 12
...processing 11 of 12
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 12
...processing 1 of 12
...processing 2 of 12
...processing 3 of 12
...processing 4 of 12
...processing 5 of 12
...processing 6 of 12
...processing 7 of 12
...processing 8 of 12
...processing 9 of 12
...processing 10 of 12
...processing 11 of 12
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:12 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:24 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:24 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:24 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:24 now processing 0
total clusters:24 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
total clusters:24 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:24 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7728-8620.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10049-13027.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.15458-18087.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21608-23537.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26197-27427.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.29461-32968.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.36922-37878.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.39872-42249.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.42782-43887.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.46614-47318.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.48812-50286.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.51095-52858.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53539-54804.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.57492-58310.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.60645-61220.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.62470-63787.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.71310-72258.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.74962-76795.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78518-80070.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.81168-83182.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.86279-89319.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.89946-92194.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.101732-105584.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108814-109726.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.110146-111262.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.116127-117288.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.118717-119974.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.120552-121441.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.123067-127891.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.1198-5475.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.8742-10359.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.18324-19758.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23392-24257.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.33498-36931.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.49892-51242.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.52785-53664.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.54441-56032.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58565-60570.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.61171-62288.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.76614-77660.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.82904-85103.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.93385-94287.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.94429-96907.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.105145-108236.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.113479-115436.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.121122-122453.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C6
Length: 122113
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:3 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:3 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:2 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:2 current j:0
j_size:2 current j:1
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C6.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:2 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9097%7Cendothelin-converting.for.123-1393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.123-1393.Ar_EST_120301b_c9097%7Cendothelin-converting.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1238%7Cchromosome.for.803-3026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.803-3026.Ar_EST_120301b_c1238%7Cchromosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c561%7Chypothetical.for.2254-3973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2254-3973.Ar_EST_120301b_c561%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.2313-3425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2313-3425.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8999%7C---NA---.for.7519-9225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.7519-9225.Ar_EST_120301b_c8999%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.for.15703-16832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15703-16832.Ar_EST_120301b_rep_c13174%7Cadp-ribosylation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.15336-16737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15336-16737.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9681%7Cvacuolar.for.15970-17826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15970-17826.Ar_EST_120301b_c9681%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14346%7Cvacuolar.for.17201-18217.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17201-18217.Ar_EST_120301b_c14346%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.for.19234-20841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19234-20841.Ar_EST_120301b_c3137%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.for.19121-20728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.19121-20728.Ar_EST_120301b_c18750%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.for.18215-20376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18215-20376.Ar_EST_120301b_c2477%7Cdelta-1-pyrroline-5-carboxylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19978%7Cdihydrolipoamide.for.21846-23160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.21846-23160.Ar_EST_120301b_c19978%7Cdihydrolipoamide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig128%7Cdihydrolipoamide.for.20387-22977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20387-22977.120301b_Contig128%7Cdihydrolipoamide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8416%7Ctwo-component.for.22663-23931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.22663-23931.Ar_EST_120301b_c8416%7Ctwo-component.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1919%7Csurface.for.24471-26129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.24471-26129.Ar_EST_120301b_c1919%7Csurface.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17688%7Calpha-galactosidase.for.26917-28272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.26917-28272.Ar_EST_120301b_c17688%7Calpha-galactosidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2981%7Cras.for.37609-39072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.37609-39072.Ar_EST_120301b_c2981%7Cras.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11131%7Cras.for.36977-38575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36977-38575.Ar_EST_120301b_c11131%7Cras.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3153%7Cras.for.36079-37994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36079-37994.Ar_EST_120301b_c3153%7Cras.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2631%7Crasgef.for.38082-39579.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.38082-39579.Ar_EST_120301b_c2631%7Crasgef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11259%7Chypothetical.for.39486-40750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.39486-40750.Ar_EST_120301b_c11259%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14312%7Cmitochondrial.for.41003-42418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41003-42418.Ar_EST_120301b_c14312%7Cmitochondrial.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18904%7Cembryof101113a3.for.42698-44071.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.42698-44071.Ar_EST_120301b_rep_c18904%7Cembryof101113a3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16334%7Ccazo.for.45899-46844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45899-46844.Ar_EST_120301b_rep_c16334%7Ccazo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig486%7Cmitochondrial.for.45155-47138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45155-47138.120301b_Contig486%7Cmitochondrial.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.for.45838-46890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45838-46890.Ar_EST_120301b_c19473%7Ctrans-2-enoyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.for.45298-46431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45298-46431.Ar_EST_120301b_rep_c19766%7Ctrans-2-enoyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13758%7Csuperoxide.for.46353-47705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46353-47705.Ar_EST_120301b_c13758%7Csuperoxide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.48138-49353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.48138-49353.Ar_EST_120301b_c15340%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12253%7Ccell.for.50027-51427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.50027-51427.Ar_EST_120301b_c12253%7Ccell.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3614%7Ctryptophan.for.51706-53464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51706-53464.Ar_EST_120301b_c3614%7Ctryptophan.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3246%7Cbp441934.for.53432-54894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53432-54894.Ar_EST_120301b_c3246%7Cbp441934.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1844%7Cprotein.for.53045-54578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.53045-54578.Ar_EST_120301b_c1844%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13342%7C---NA---.for.54901-55868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.54901-55868.Ar_EST_120301b_c13342%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17156%7Ckiaa1052.for.55079-56460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55079-56460.Ar_EST_120301b_c17156%7Ckiaa1052.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12715%7Cfq318461.for.62217-63618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.62217-63618.Ar_EST_120301b_c12715%7Cfq318461.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15940%7Cconserved.for.63630-65002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.63630-65002.Ar_EST_120301b_c15940%7Cconserved.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1362%7C---NA---.for.64492-65876.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.64492-65876.Ar_EST_120301b_c1362%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15949%7C---NA---.for.68482-69658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68482-69658.Ar_EST_120301b_rep_c15949%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.for.68183-69812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.68183-69812.Ar_EST_120301b_c2106%7Cklhrrc001_12-e02.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.73015-74155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73015-74155.Ar_EST_120301b_c15340%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20087%7Cprag-.for.74208-75368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74208-75368.Ar_EST_120301b_rep_c20087%7Cprag-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4808%7Cprag-.for.74191-75388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.74191-75388.Ar_EST_120301b_rep_c4808%7Cprag-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.for.79972-81811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.79972-81811.Ar_EST_120301b_c8841%7Cag2_p7_l13_m13r.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4471%7Cshort-chain.for.81454-83106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81454-83106.Ar_EST_120301b_rep_c4471%7Cshort-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5840%7Cshort-chain.for.81555-83050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81555-83050.Ar_EST_120301b_rep_c5840%7Cshort-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10307%7Cshort-chain.for.81484-82721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81484-82721.Ar_EST_120301b_rep_c10307%7Cshort-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig656%7Carmadillo.for.91033-93810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.91033-93810.120301b_Contig656%7Carmadillo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7896%7Cprotein.for.93047-95284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.93047-95284.Ar_EST_120301b_c7896%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.97265-98467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97265-98467.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14686%7Chypothetical.for.97297-98350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97297-98350.Ar_EST_120301b_c14686%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.97324-98663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.97324-98663.Ar_EST_120301b_c2116%7Chat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.98833-100062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.98833-100062.Ar_EST_120301b_c15340%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4652%7Catp-dependent.for.99963-102250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.99963-102250.Ar_EST_120301b_rep_c4652%7Catp-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14242%7Catp.for.100109-101104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100109-101104.Ar_EST_120301b_c14242%7Catp.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12029%7Cpirin-related.for.102587-103992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102587-103992.Ar_EST_120301b_c12029%7Cpirin-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8398%7Cnadh.for.103646-104832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103646-104832.Ar_EST_120301b_rep_c8398%7Cnadh.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c775%7Cnadh.for.103680-104925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103680-104925.Ar_EST_120301b_c775%7Cnadh.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16811%7Cprotein.for.104900-106748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.104900-106748.Ar_EST_120301b_c16811%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig532%7Cdnaj.for.108502-110436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108502-110436.120301b_Contig532%7Cdnaj.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5627%7Cdnaj.for.108299-110431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108299-110431.Ar_EST_120301b_rep_c5627%7Cdnaj.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6751%7Cdnaj.for.108406-110044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108406-110044.Ar_EST_120301b_rep_c6751%7Cdnaj.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19114%7Cccih.for.110438-111717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110438-111717.Ar_EST_120301b_c19114%7Cccih.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8278%7Ccomplex.for.110596-111614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.110596-111614.Ar_EST_120301b_c8278%7Ccomplex.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16738%7Cprotein.for.111320-112663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.111320-112663.Ar_EST_120301b_c16738%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.121338-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121338-122113.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.121423-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121423-122113.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.121306-122113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.121306-122113.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:71 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:53 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:58 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:78 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:59 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:72 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:67 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:66 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/35/CC/AR_HYBRID_130113_TINTIN_EF2ON_C6//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C6/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:50 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.for.2365-4055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.2365-4055.gi%7C284088158%7Cgb%7CEFC41823%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.for.3371-6960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.3371-6960.gi%7C284088143%7Cgb%7CEFC41808%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.15266-18233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.15266-18233.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.17441-18522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.17441-18522.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.for.18360-20850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.18360-20850.gi%7C284092276%7Cgb%7CEFC45919%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.for.20588-23148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20588-23148.gi%7C284094295%7Cgb%7CEFC47929%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.for.20627-22068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20627-22068.gi%7C284094355%7Cgb%7CEFC47989%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.for.20579-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.20579-23154.gi%7C284094493%7Cgb%7CEFC48127%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.for.36113-38819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.36113-38819.gi%7C284084633%7Cgb%7CEFC38324%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.for.41048-43365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.41048-43365.gi%7C284097160%7Cgb%7CEFC50787%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.for.43995-45841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.43995-45841.gi%7C284083887%7Cgb%7CEFC37585%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.for.45165-46912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.45165-46912.gi%7C284088044%7Cgb%7CEFC41710%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083596%7Cgb%7CEFC37298%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.for.46621-48068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.46621-48068.gi%7C284083542%7Cgb%7CEFC37244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.for.51890-53804.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.51890-53804.gi%7C284085466%7Cgb%7CEFC39150%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.for.55217-58498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.55217-58498.gi%7C284088022%7Cgb%7CEFC41688%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.for.57841-59500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59500.gi%7C284094068%7Cgb%7CEFC47703%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.for.58206-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58206-59248.gi%7C284093385%7Cgb%7CEFC47023%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.58254-59266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58254-59266.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.57859-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59518.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.for.58215-59287.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58215-59287.gi%7C284085317%7Cgb%7CEFC39002%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.58239-59248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58239-59248.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.58200-59290.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58200-59290.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.for.57859-59515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57859-59515.gi%7C284089231%7Cgb%7CEFC42890%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.57853-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57853-59518.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.for.57856-59488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59488.gi%7C284092366%7Cgb%7CEFC46008%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.57856-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59518.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.58227-59203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.58227-59203.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.for.57838-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57838-59518.gi%7C284085986%7Cgb%7CEFC39666%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.for.57856-59599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57856-59599.gi%7C284094832%7Cgb%7CEFC48465%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.for.57841-59518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.57841-59518.gi%7C284088361%7Cgb%7CEFC42025%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.for.60697-61847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.60697-61847.gi%7C284097221%7Cgb%7CEFC50848%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.for.67414-68339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67414-68339.gi%7C284094035%7Cgb%7CEFC47670%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.for.67289-68478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.67289-68478.gi%7C284093439%7Cgb%7CEFC47077%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.for.73551-74923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.73551-74923.gi%7C284085372%7Cgb%7CEFC39056%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.75925-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77141.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.75922-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77129.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.75916-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77078.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.75928-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77075.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.75850-77639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75850-77639.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.75925-77453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77453.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.75931-77072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77072.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.75928-77915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77915.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.75901-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77078.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.75892-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75892-77078.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.75874-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75874-77078.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.for.75877-77117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75877-77117.gi%7C284090289%7Cgb%7CEFC43941%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.75922-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77237.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.75919-77417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77417.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.75925-77075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77075.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.75901-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75901-77087.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.75922-77087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77087.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.75916-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77162.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.75916-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77120.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.75925-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77108.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.75883-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75883-77078.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.75835-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77141.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.75880-77120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75880-77120.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.75925-77129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77129.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.75817-77225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77225.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.75817-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77162.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.75907-77084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77084.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.75907-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75907-77108.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.75922-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77195.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.75745-77108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75745-77108.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.75835-77150.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75835-77150.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.75922-77126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77126.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.75922-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77078.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.75919-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75919-77162.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.75913-77195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77195.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.75922-77135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77135.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.76000-77069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.76000-77069.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.75856-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75856-77078.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.75817-77147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77147.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.75928-77132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75928-77132.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.for.75922-77162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77162.gi%7C284082694%7Cgb%7CEFC36407%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.75574-77138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75574-77138.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.75895-77156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75895-77156.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.75922-77267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77267.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.75913-77078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75913-77078.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.75925-77102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75925-77102.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.75931-77159.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77159.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.75817-77237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75817-77237.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.75931-77408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75931-77408.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.75916-77168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75916-77168.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.for.75922-77111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77111.gi%7C284085350%7Cgb%7CEFC39035%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.75685-77141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75685-77141.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.75922-77051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.75922-77051.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.for.81508-83189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.81508-83189.gi%7C284085335%7Cgb%7CEFC39020%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.for.90990-95305.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.90990-95305.gi%7C284096729%7Cgb%7CEFC50356%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.for.95606-96932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.95606-96932.gi%7C284092459%7Cgb%7CEFC46101%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.for.100142-102232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100142-102232.gi%7C284096805%7Cgb%7CEFC50432%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.for.100359-101497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.100359-101497.gi%7C284082010%7Cgb%7CEFC35809%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284089472%7Cgb%7CEFC43129%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.for.102769-104123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.102769-104123.gi%7C284086520%7Cgb%7CEFC40196%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.for.103802-104936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.103802-104936.gi%7C284091621%7Cgb%7CEFC45267%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.108344-109338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109338.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.108338-109371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-109371.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.108344-109335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109335.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.108344-109332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108344-109332.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.108329-109263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108329-109263.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.for.108338-110424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C6.108338-110424.gi%7C284096576%7Cgb%7CEFC50204%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.322-3855.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.18414-22960.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.39685-40550.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.51811-53604.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.58040-59318.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.63829-65696.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.68382-69612.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.73154-75180.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76115-77208.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80171-82989.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.95805-96732.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.97430-98476.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.99032-99862.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.100162-102050.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.108498-110231.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3570-6760.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.7718-9025.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.15465-18322.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.22851-23731.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.24670-25942.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.27116-28077.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.36278-38872.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.41202-43976.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.45364-47868.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.48329-49159.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.50226-51227.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.53242-54694.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.55100-56260.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.62416-63418.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.67488-68278.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.91189-95105.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.102786-104736.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.110637-111517.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111519-112463.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C7
Length: 134939
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:55 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:38 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:33 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:53 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:43 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:56 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:37 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:44 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:53 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:40 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:10 current j:0
j_size:10 current j:1
j_size:10 current j:2
j_size:10 current j:3
j_size:10 current j:4
j_size:10 current j:5
j_size:10 current j:6
j_size:10 current j:7
j_size:10 current j:8
j_size:10 current j:9
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C7.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:13 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:6 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4485%7Clate.for.48-1639.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.48-1639.Ar_EST_120301b_rep_c4485%7Clate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6023%7Chypothetical.for.133-1450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.133-1450.Ar_EST_120301b_rep_c6023%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12513%7Cantifreeze.for.16-1223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.16-1223.Ar_EST_120301b_rep_c12513%7Cantifreeze.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5923%7Cubiquitin.for.9-1509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.9-1509.Ar_EST_120301b_rep_c5923%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16388%7Crr1bs47tf.for.3291-4350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.3291-4350.Ar_EST_120301b_c16388%7Crr1bs47tf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11420%7Cc-4.for.12132-13718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12132-13718.Ar_EST_120301b_rep_c11420%7Cc-4.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6787%7Cc-4.for.11988-13571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.11988-13571.Ar_EST_120301b_rep_c6787%7Cc-4.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11905%7Calpha.for.28565-29972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28565-29972.Ar_EST_120301b_c11905%7Calpha.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13284%7Cvacuolar.for.41047-42400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41047-42400.Ar_EST_120301b_c13284%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1689%7Cvacuolar.for.41819-43964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41819-43964.Ar_EST_120301b_c1689%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10762%7Cvacuolar.for.41624-42922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.41624-42922.Ar_EST_120301b_c10762%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1374%7Cbase.for.45520-46917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.45520-46917.Ar_EST_120301b_c1374%7Cbase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14203%7Cprotein.for.47262-48388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.47262-48388.Ar_EST_120301b_c14203%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9392%7Calpha.for.49898-51378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.49898-51378.Ar_EST_120301b_c9392%7Calpha.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1168%7Cprobable.for.55493-56901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.55493-56901.Ar_EST_120301b_c1168%7Cprobable.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12300%7Cp-type.for.54632-56292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54632-56292.Ar_EST_120301b_c12300%7Cp-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13768%7Cp-type.for.56376-58077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56376-58077.Ar_EST_120301b_c13768%7Cp-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1093%7Cbiotinidase.for.57625-59775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.57625-59775.120301b_Contig1093%7Cbiotinidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13105%7Cchloride.for.60848-62090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.60848-62090.Ar_EST_120301b_c13105%7Cchloride.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11503%7Cchloride.for.61480-62910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.61480-62910.Ar_EST_120301b_c11503%7Cchloride.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10696%7Cdynein.for.63572-64525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.63572-64525.Ar_EST_120301b_c10696%7Cdynein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14804%7Cbp072254.for.69102-70291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69102-70291.Ar_EST_120301b_c14804%7Cbp072254.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3050%7Cviral.for.69616-71615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.69616-71615.Ar_EST_120301b_c3050%7Cviral.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1063%7Cpredicted.for.70835-72329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.70835-72329.Ar_EST_120301b_c1063%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2507%7C---NA---.for.71805-73298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.71805-73298.Ar_EST_120301b_c2507%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c217%7Cprotein.for.80145-81818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.80145-81818.Ar_EST_120301b_c217%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9172%7Cprotein.for.81335-83480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81335-83480.Ar_EST_120301b_c9172%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17870%7Ct-cell.for.89208-90299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.89208-90299.Ar_EST_120301b_c17870%7Ct-cell.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11765%7Csolanesyl.for.92442-93928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-93928.Ar_EST_120301b_c11765%7Csolanesyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2548%7Cprotein-tyrosine.for.96640-97650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96640-97650.Ar_EST_120301b_c2548%7Cprotein-tyrosine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20445%7Cpyridine.for.97523-98612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97523-98612.Ar_EST_120301b_rep_c20445%7Cpyridine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c129%7Cnadh.for.97314-99592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97314-99592.Ar_EST_120301b_c129%7Cnadh.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19430%7Ctim50p.for.99275-100655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99275-100655.Ar_EST_120301b_c19430%7Ctim50p.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9578%7Ctim50p.for.99070-100422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99070-100422.Ar_EST_120301b_c9578%7Ctim50p.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3058%7Cprotein.for.100740-102763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100740-102763.Ar_EST_120301b_c3058%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12267%7Cat3g52930-like.for.102247-103458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.102247-103458.Ar_EST_120301b_c12267%7Cat3g52930-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3718%7Cdienelactone.for.103910-105498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.103910-105498.Ar_EST_120301b_c3718%7Cdienelactone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20209%7Cribosomal.for.106394-107638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106394-107638.Ar_EST_120301b_rep_c20209%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3985%7C40s.for.105944-107655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105944-107655.Ar_EST_120301b_c3985%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5446%7Cribosomal.for.106398-107634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106398-107634.Ar_EST_120301b_rep_c5446%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18562%7C40s.for.106159-107137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106159-107137.Ar_EST_120301b_c18562%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6169%7C40s.for.105976-107196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.105976-107196.Ar_EST_120301b_rep_c6169%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4920%7C40s.for.106100-107215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106100-107215.Ar_EST_120301b_rep_c4920%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6109%7C40s.for.106031-107257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106031-107257.Ar_EST_120301b_rep_c6109%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c785%7C5.for.109154-110971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.109154-110971.Ar_EST_120301b_c785%7C5.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12153%7Cpredicted.for.110571-111898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.110571-111898.Ar_EST_120301b_c12153%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12867%7C---NA---.for.122238-124136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.122238-124136.Ar_EST_120301b_c12867%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2650%7Cconserved.for.125607-127233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.125607-127233.Ar_EST_120301b_c2650%7Cconserved.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.for.129843-131563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129843-131563.Ar_EST_120301b_c2689%7Cnitella_74953_lrc40900_c.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9169%7Cring.for.129877-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129877-133148.Ar_EST_120301b_c9169%7Cring.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12191%7Ccls_c.for.129992-133148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.129992-133148.Ar_EST_120301b_c12191%7Ccls_c.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:30 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:29 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:42 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:42 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:57 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:48 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:38 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:38 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:47 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:33 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F6/68/AR_HYBRID_130113_TINTIN_EF2ON_C7//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C7/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:32 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.for.12012-13671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13671.gi%7C284083691%7Cgb%7CEFC37392%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.for.12012-13644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.12012-13644.gi%7C284096883%7Cgb%7CEFC50510%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.for.28293-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.28293-29887.gi%7C284089652%7Cgb%7CEFC43308%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.30299-33450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33450.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.30350-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30350-33114.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.30440-33144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33144.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.30443-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33114.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.30299-33114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33114.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.30443-33066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30443-33066.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.30299-33183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30299-33183.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.for.30440-33108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30440-33108.gi%7C284085875%7Cgb%7CEFC39555%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.30419-32517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.30419-32517.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.for.34017-35008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.34017-35008.gi%7C284090094%7Cgb%7CEFC43748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.for.40616-41691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40616-41691.gi%7C284088066%7Cgb%7CEFC41732%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.for.40911-43775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.40911-43775.gi%7C284088065%7Cgb%7CEFC41731%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.54064-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54064-58018.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54067-57919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57919.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54040-58018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54040-58018.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.54067-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57955.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.54067-57922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.54067-57922.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56298-57955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.56298-57955.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.for.65466-67930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.65466-67930.gi%7C284091674%7Cgb%7CEFC45319%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.for.67823-69659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67823-69659.gi%7C284091345%7Cgb%7CEFC44992%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.for.67832-69371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.67832-69371.gi%7C284093228%7Cgb%7CEFC46867%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.81166-83419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83419.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.81166-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81166-83413.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.81169-83440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.81169-83440.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.86030-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89022.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.86033-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89028.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.85979-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85979-89034.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.for.86069-88737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-88737.gi%7C284090673%7Cgb%7CEFC44323%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.86036-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89439.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.86012-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86012-89022.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.86030-88998.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-88998.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.86027-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89037.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.86015-89466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89466.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.86027-89064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89064.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.86027-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89034.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.86042-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86042-89022.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.86036-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89028.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.for.86030-89424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89424.gi%7C284093864%7Cgb%7CEFC47500%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.86021-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89028.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.86036-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89034.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.85994-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85994-89034.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.86030-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89037.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.86024-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89034.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.86030-89028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89028.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.85871-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.85871-89097.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.86021-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86021-89061.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.86015-89097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86015-89097.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.86033-89082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89082.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.86024-89061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89061.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.86024-89052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86024-89052.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.86036-89049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89049.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.86051-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86051-89022.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.86033-89043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86033-89043.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.86225-88791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86225-88791.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.86030-89439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89439.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.86030-89034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89034.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.86030-89487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86030-89487.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.86036-89022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86036-89022.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.86063-89115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89115.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.86063-89037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86063-89037.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.86069-89040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86069-89040.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.86027-89025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.86027-89025.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.for.92442-94214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.92442-94214.gi%7C284084169%7Cgb%7CEFC37864%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.for.96856-97871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.96856-97871.gi%7C284093150%7Cgb%7CEFC46789%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.for.97180-99460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.97180-99460.gi%7C284086033%7Cgb%7CEFC39712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.for.99012-100303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.99012-100303.gi%7C284097005%7Cgb%7CEFC50632%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.for.100822-102855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.100822-102855.gi%7C284094875%7Cgb%7CEFC48508%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.for.101080-102267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.101080-102267.gi%7C284090837%7Cgb%7CEFC44487%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.for.106048-107651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C7.106048-107651.gi%7C284087994%7Cgb%7CEFC41660%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:13 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
...processing 0 of 25
...processing 1 of 25
...processing 2 of 25
...processing 3 of 25
...processing 4 of 25
...processing 5 of 25
...processing 6 of 25
...processing 7 of 25
...processing 8 of 25
...processing 9 of 25
...processing 10 of 25
...processing 11 of 25
...processing 12 of 25
...processing 13 of 25
...processing 14 of 25
...processing 15 of 25
...processing 16 of 25
...processing 17 of 25
...processing 18 of 25
...processing 19 of 25
...trimming the rest
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 20
...processing 1 of 20
...processing 2 of 20
...processing 3 of 20
...processing 4 of 20
...processing 5 of 20
...processing 6 of 20
...processing 7 of 20
...processing 8 of 20
...processing 9 of 20
...processing 10 of 20
...processing 11 of 20
...processing 12 of 20
...processing 13 of 20
...processing 14 of 20
...processing 15 of 20
...processing 16 of 20
...processing 17 of 20
...processing 18 of 20
...processing 19 of 20
...trimming the rest
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:14 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.237-1449.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3490-4150.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12187-13518.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30498-32914.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.40815-43764.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.45719-46717.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.54239-57877.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.65665-67730.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.69301-72129.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.86214-88915.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.92599-94014.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.96839-97671.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.100939-102655.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.109353-111698.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.434-1250.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.28492-29772.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.34216-34808.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.50087-51178.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.57824-59575.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.61045-61947.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.72004-73098.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.81365-83280.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.89359-90195.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.97379-100462.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104109-105298.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.106175-107451.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C8
Length: 71281
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:3 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:5 current j:0
j_size:5 current j:1
j_size:5 current j:2
j_size:5 current j:3
j_size:5 current j:4
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C8.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:2 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11569%7Crna-binding.for.1136-2408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.1136-2408.Ar_EST_120301b_c11569%7Crna-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1047%7Cdual.for.5428-7005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.5428-7005.120301b_Contig1047%7Cdual.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9703%7Cwd40.for.7390-8926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7390-8926.Ar_EST_120301b_c9703%7Cwd40.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig523%7Cmetaxin.for.9216-10932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9216-10932.120301b_Contig523%7Cmetaxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14860%7Cmetaxin-3.for.9823-11135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.9823-11135.Ar_EST_120301b_c14860%7Cmetaxin-3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17966%7Cmitogen-activated.for.10560-12367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10560-12367.Ar_EST_120301b_c17966%7Cmitogen-activated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11899%7Cmix.for.12967-14078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12967-14078.Ar_EST_120301b_c11899%7Cmix.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14282%7C---NA---.for.13676-14878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.13676-14878.Ar_EST_120301b_c14282%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3639%7C0298671.for.14112-16868.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.14112-16868.Ar_EST_120301b_c3639%7C0298671.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.16113-17345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.16113-17345.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2878%7Cacyloxyacyl.for.18765-20718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18765-20718.Ar_EST_120301b_c2878%7Cacyloxyacyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig944%7Cmitochondrial.for.20293-21752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.20293-21752.120301b_Contig944%7Cmitochondrial.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14537%7C---NA---.for.25006-25909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.25006-25909.Ar_EST_120301b_c14537%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig939%7Cacid.for.24454-25816.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24454-25816.120301b_Contig939%7Cacid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.for.26963-28583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.26963-28583.Ar_EST_120301b_c944%7Cest_lsaa_evv_1238232.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14759%7C---NA---.for.29307-30510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.29307-30510.Ar_EST_120301b_c14759%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12291%7Cest03036.for.28979-30318.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.28979-30318.Ar_EST_120301b_c12291%7Cest03036.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16855%7Cankyrin.for.32668-33901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.32668-33901.Ar_EST_120301b_c16855%7Cankyrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2487%7Ccawz.for.36801-38241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.36801-38241.Ar_EST_120301b_c2487%7Ccawz.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9594%7Cy1842_erwct.for.39726-41093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.39726-41093.Ar_EST_120301b_c9594%7Cy1842_erwct.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4074%7Cpredicted.for.44695-46110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44695-46110.Ar_EST_120301b_rep_c4074%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12747%7C---NA---.for.44884-46065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44884-46065.Ar_EST_120301b_rep_c12747%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17783%7Cadenylate.for.45407-46440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45407-46440.Ar_EST_120301b_rep_c17783%7Cadenylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5659%7Cadenylate.for.45408-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45408-46915.Ar_EST_120301b_rep_c5659%7Cadenylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4208%7Cadenylate.for.45358-46915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45358-46915.Ar_EST_120301b_rep_c4208%7Cadenylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c897%7C3.for.48834-50442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.48834-50442.Ar_EST_120301b_c897%7C3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c535%7Cubiquitin-specific.for.52735-53854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.52735-53854.Ar_EST_120301b_c535%7Cubiquitin-specific.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c876%7Cprotein.for.51138-54171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51138-54171.Ar_EST_120301b_c876%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.for.51261-52540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51261-52540.Ar_EST_120301b_rep_c19537%7Cubiquitin-specific.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6146%7Cprotein.for.54235-55373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54235-55373.Ar_EST_120301b_rep_c6146%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig907%7Cubiquitin-conjugating.for.54109-55392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54109-55392.120301b_Contig907%7Cubiquitin-conjugating.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1366%7Cphospholipid-transporting.for.55948-58049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55948-58049.120301b_Contig1366%7Cphospholipid-transporting.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c820%7Caminophospholipid.for.57236-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.57236-58683.Ar_EST_120301b_c820%7Caminophospholipid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18642%7Cprotein.for.55305-57062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55305-57062.Ar_EST_120301b_c18642%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1892%7Cprobable.for.54733-56157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54733-56157.Ar_EST_120301b_c1892%7Cprobable.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10313%7Cphospholipid-transporting.for.58014-59073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.58014-59073.Ar_EST_120301b_c10313%7Cphospholipid-transporting.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15133%7Cpredicted.for.60971-62209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.60971-62209.Ar_EST_120301b_c15133%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3416%7Cprotein.for.65768-67717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.65768-67717.Ar_EST_120301b_c3416%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11057%7Cupf0061.for.66140-67643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.66140-67643.Ar_EST_120301b_c11057%7Cupf0061.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20360%7Cacid.for.68216-69457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68216-69457.Ar_EST_120301b_rep_c20360%7Cacid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12404%7Cacid.for.68179-69815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68179-69815.Ar_EST_120301b_rep_c12404%7Cacid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig348%7Cacid.for.68030-69951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68030-69951.120301b_Contig348%7Cacid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6228%7Ceri1.for.69349-70801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69349-70801.Ar_EST_120301b_rep_c6228%7Ceri1.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:34 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:34 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:40 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:38 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:27 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:33 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:29 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/94/14/AR_HYBRID_130113_TINTIN_EF2ON_C8//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C8/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:33 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.for.575-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.575-2502.gi%7C284085834%7Cgb%7CEFC39515%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.for.3535-5826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3535-5826.gi%7C18033042%7Cgb%7CAAL56965%2E1%7CAF322049_1.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.for.3427-5844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5844.gi%7C284094205%7Cgb%7CEFC47840%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.for.3427-5808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3427-5808.gi%7C284083921%7Cgb%7CEFC37619%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.for.3439-5862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3439-5862.gi%7C284094210%7Cgb%7CEFC47845%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.for.3415-5961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.3415-5961.gi%7C284089748%7Cgb%7CEFC43404%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.for.6332-7440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.6332-7440.gi%7C284095071%7Cgb%7CEFC48703%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.7147-8987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.7147-8987.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.10634-12660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.10634-12660.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.for.11987-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11987-13041.gi%7C284095262%7Cgb%7CEFC48893%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.11954-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11954-13208.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.11948-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13199.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.for.12086-13205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12086-13205.gi%7C284090721%7Cgb%7CEFC44371%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.for.12038-13029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12038-13029.gi%7C284094778%7Cgb%7CEFC48411%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.11930-13208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13208.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.11930-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13041.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.11948-13044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11948-13044.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.for.11951-13041.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11951-13041.gi%7C284089016%7Cgb%7CEFC42676%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.for.11939-13017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11939-13017.gi%7C284087164%7Cgb%7CEFC40836%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.11930-13107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.11930-13107.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.12095-13199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.12095-13199.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.for.18781-20717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.18781-20717.gi%7C284089587%7Cgb%7CEFC43244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.for.19961-21784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.19961-21784.gi%7C284085037%7Cgb%7CEFC38724%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.for.22837-24732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.22837-24732.gi%7C284083566%7Cgb%7CEFC37268%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.24184-25881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.24184-25881.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.for.34683-36673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.34683-36673.gi%7C284093351%7Cgb%7CEFC46989%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.for.44305-45479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.44305-45479.gi%7C284084118%7Cgb%7CEFC37814%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.for.45412-46883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.45412-46883.gi%7C284085702%7Cgb%7CEFC39384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.for.46121-48984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.46121-48984.gi%7C284085662%7Cgb%7CEFC39344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.for.51128-54445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.51128-54445.gi%7C284090469%7Cgb%7CEFC44121%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.for.54190-55421.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54190-55421.gi%7C284091315%7Cgb%7CEFC44962%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.for.54184-55409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55409.gi%7C284090821%7Cgb%7CEFC44471%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.for.54163-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54163-55403.gi%7C284089020%7Cgb%7CEFC42680%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.for.54166-55394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55394.gi%7C284094435%7Cgb%7CEFC48069%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.for.54166-55403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55403.gi%7C284084285%7Cgb%7CEFC37979%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.54166-55391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55391.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.for.54184-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54184-55418.gi%7C284090223%7Cgb%7CEFC43876%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.54166-55400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54166-55400.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.for.54334-55418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54334-55418.gi%7C284096426%7Cgb%7CEFC50054%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.for.55055-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55055-59474.gi%7C284089788%7Cgb%7CEFC43443%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.54815-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54815-59459.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.55181-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-59459.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55133-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55133-59459.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.54833-59474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.54833-59474.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.55181-56826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.55181-56826.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284085871%7Cgb%7CEFC39552%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284084771%7Cgb%7CEFC38460%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284088755%7Cgb%7CEFC42417%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.for.68157-69939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.68157-69939.gi%7C284089891%7Cgb%7CEFC43546%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.for.69373-70748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70748.gi%7C284096470%7Cgb%7CEFC50098%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.for.69373-70766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C8.69373-70766.gi%7C284092674%7Cgb%7CEFC46315%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:17 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:17 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:10 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:10 now processing 0
total clusters:10 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:10 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:13 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
...processing 0 of 2
...processing 1 of 2
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:13 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:13 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.3614-7246.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9990-12460.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13126-13878.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.16310-17234.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18964-20518.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24383-25709.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29178-30310.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.32867-33701.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34864-36473.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39925-40893.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44894-46715.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.61156-62009.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.68225-70601.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.774-2302.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.7589-8726.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.12129-13008.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.20160-21584.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.27162-28383.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.37000-38041.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.44504-45279.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.46320-48784.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49033-50262.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51327-54245.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.54308-59274.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.65959-67517.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C9
Length: 143137
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:54 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:66 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:41 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:64 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:58 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:64 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:49 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:63 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:57 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:57 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:6 current j:0
j_size:6 current j:1
j_size:6 current j:2
j_size:6 current j:3
j_size:6 current j:4
j_size:6 current j:5
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C9.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:10 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:10 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:4 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2247%7Cm7g%285.for.2328-3644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.2328-3644.Ar_EST_120301b_c2247%7Cm7g%285.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1181%7Cglutaminase.for.3456-5008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3456-5008.Ar_EST_120301b_c1181%7Cglutaminase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17708%7Ccalcium-dependent.for.4667-5932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.4667-5932.Ar_EST_120301b_c17708%7Ccalcium-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18654%7Chistone.for.7274-8455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7274-8455.Ar_EST_120301b_rep_c18654%7Chistone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20047%7Chistone.for.7291-8488.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7291-8488.Ar_EST_120301b_rep_c20047%7Chistone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.8269-9793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.8269-9793.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11519%7Ccarboxylesterase.for.15701-17156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.15701-17156.Ar_EST_120301b_c11519%7Ccarboxylesterase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.for.20388-21618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.20388-21618.Ar_EST_120301b_c12514%7Cic0aaa79dd02rm1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c122%7Cprotein.for.23727-25878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23727-25878.Ar_EST_120301b_c122%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig707%7Cstructure.for.23281-25022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23281-25022.120301b_Contig707%7Cstructure.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig744%7Cvesicle.for.27994-29515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.27994-29515.120301b_Contig744%7Cvesicle.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1993%7Ccof-like.for.30494-31813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.30494-31813.Ar_EST_120301b_c1993%7Ccof-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11129%7Csl_.for.34342-35297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.34342-35297.Ar_EST_120301b_rep_c11129%7Csl_.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17985%7Cheat.for.35244-36515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35244-36515.Ar_EST_120301b_c17985%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18115%7C---NA---.for.38253-39152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.38253-39152.Ar_EST_120301b_c18115%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.for.43281-44143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.43281-44143.Ar_EST_120301b_c10295%7Cgh_hypt_01-01-10r_h06_.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5908%7Cest154.for.44564-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44564-45707.Ar_EST_120301b_rep_c5908%7Cest154.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17536%7Cace00011780.for.44608-45707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44608-45707.Ar_EST_120301b_rep_c17536%7Cace00011780.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19922%7Csbay-f90.for.45128-46080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45128-46080.Ar_EST_120301b_rep_c19922%7Csbay-f90.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.for.44704-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44704-45722.Ar_EST_120301b_rep_c18817%7Ccdn38p0008e01.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13131%7Clucilia.for.44577-45900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44577-45900.Ar_EST_120301b_rep_c13131%7Clucilia.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7193%7Csoybean.for.44565-45685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44565-45685.Ar_EST_120301b_rep_c7193%7Csoybean.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig645%7Ccytochrome.for.44685-46267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44685-46267.120301b_Contig645%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7085%7Cfq079731.for.44762-45838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44762-45838.Ar_EST_120301b_rep_c7085%7Cfq079731.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig637%7Cest154.for.44568-45722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44568-45722.120301b_Contig637%7Cest154.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7059%7Cfp515931.for.44757-46264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44757-46264.Ar_EST_120301b_rep_c7059%7Cfp515931.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig630%7Chypothetical.for.44687-45807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.44687-45807.120301b_Contig630%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.for.45973-46909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.45973-46909.Ar_EST_120301b_c17959%7Cms1-0010t-d100-c05-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13118%7C---NA---.for.46737-48076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.46737-48076.Ar_EST_120301b_c13118%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19997%7Cendonuclease.for.49277-50751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49277-50751.Ar_EST_120301b_c19997%7Cendonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7711%7Cendonuclease.for.49011-50427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49011-50427.Ar_EST_120301b_c7711%7Cendonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1977%7Cendonuclease.for.49186-50532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49186-50532.Ar_EST_120301b_c1977%7Cendonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18660%7Cendonuclease.for.49180-50761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.49180-50761.Ar_EST_120301b_c18660%7Cendonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14465%7Cpredicted.for.61002-62245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.61002-62245.Ar_EST_120301b_c14465%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20376%7Cprotein.for.67849-70497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.67849-70497.Ar_EST_120301b_c20376%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15791%7Cmoobi53tf.for.71085-72566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.71085-72566.Ar_EST_120301b_c15791%7Cmoobi53tf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12677%7Cmulti-sensor.for.76311-78090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.76311-78090.Ar_EST_120301b_c12677%7Cmulti-sensor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3335%7Caerobic.for.77895-79314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.77895-79314.Ar_EST_120301b_c3335%7Caerobic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9381%7Chistidine.for.78583-79990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.78583-79990.Ar_EST_120301b_c9381%7Chistidine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8780%7Cccgo.for.83976-85494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.83976-85494.Ar_EST_120301b_c8780%7Cccgo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.87695-88589.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.87695-88589.Ar_EST_120301b_c10994%7Cct751907.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18336%7C---NA---.for.95445-96809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.95445-96809.Ar_EST_120301b_c18336%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4188%7Chistone.for.101375-103374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101375-103374.Ar_EST_120301b_rep_c4188%7Chistone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5666%7Cc-terminal.for.101564-103377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101564-103377.Ar_EST_120301b_rep_c5666%7Cc-terminal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19411%7C60s.for.101822-102850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.101822-102850.Ar_EST_120301b_rep_c19411%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.for.104055-105009.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104055-105009.Ar_EST_120301b_rep_c15541%7Ctyrosyl-trna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2608%7Ccarboxypeptidase.for.102704-105003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102704-105003.Ar_EST_120301b_c2608%7Ccarboxypeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19821%7Cprotein.for.104883-106741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.104883-106741.Ar_EST_120301b_c19821%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8714%7Cfs351607.for.107515-109235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.107515-109235.Ar_EST_120301b_c8714%7Cfs351607.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.109075-110229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.109075-110229.Ar_EST_120301b_c1151%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8321%7Chypothetical.for.113081-114435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.113081-114435.Ar_EST_120301b_c8321%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18042%7Cmembrane-associated.for.114907-116209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.114907-116209.Ar_EST_120301b_c18042%7Cmembrane-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9130%7Chypothetical.for.122599-123971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122599-123971.Ar_EST_120301b_rep_c9130%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3158%7Catp-dependent.for.130435-132491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130435-132491.Ar_EST_120301b_c3158%7Catp-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16159%7Cpentapeptide.for.127438-128733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127438-128733.Ar_EST_120301b_c16159%7Cpentapeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17324%7Cdeah-box.for.129804-131312.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129804-131312.Ar_EST_120301b_c17324%7Cdeah-box.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13668%7Cpentapeptide.for.126833-134289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.126833-134289.Ar_EST_120301b_c13668%7Cpentapeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.134008-135254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134008-135254.Ar_EST_120301b_c18239%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.134325-135441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.134325-135441.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1054%7Creverse.for.137097-139562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137097-139562.120301b_Contig1054%7Creverse.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig87%7Creverse.for.137443-141840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.137443-141840.120301b_Contig87%7Creverse.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1127%7Csite-specific.for.138478-140457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.138478-140457.Ar_EST_120301b_c1127%7Csite-specific.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11365%7C---NA---.for.140516-141818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.140516-141818.Ar_EST_120301b_c11365%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1151%7Cprotein.for.139510-140849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.139510-140849.Ar_EST_120301b_c1151%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15418%7C0173437.for.141397-142458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141397-142458.Ar_EST_120301b_c15418%7C0173437.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1468%7Cfy881664.for.141888-143137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141888-143137.Ar_EST_120301b_c1468%7Cfy881664.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17518%7C1098310.for.141666-143078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.141666-143078.Ar_EST_120301b_c17518%7C1098310.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:35 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:35 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
total clusters:35 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:34 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:29 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:40 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:54 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:53 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:55 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:34 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/88/B6/AR_HYBRID_130113_TINTIN_EF2ON_C9//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C9/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:30 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.for.3766-5632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.3766-5632.gi%7C284096617%7Cgb%7CEFC50245%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.for.7281-8482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8482.gi%7C284085117%7Cgb%7CEFC38803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.for.7281-8437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8437.gi%7C284094028%7Cgb%7CEFC47663%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.for.7281-8476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7281-8476.gi%7C284096335%7Cgb%7CEFC49963%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284083146%7Cgb%7CEFC36852%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284096073%7Cgb%7CEFC49702%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.for.7275-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7275-8479.gi%7C284083449%7Cgb%7CEFC37152%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.for.7518-8467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7518-8467.gi%7C284090015%7Cgb%7CEFC43669%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.for.7272-8479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.7272-8479.gi%7C284088656%7Cgb%7CEFC42318%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.for.16753-17813.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.16753-17813.gi%7C284082495%7Cgb%7CEFC36212%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.for.23366-25512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.23366-25512.gi%7C284085727%7Cgb%7CEFC39409%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.31933-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33185.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.31891-33125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31891-33125.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.31933-33155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33155.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.31933-33176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33176.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.31933-33137.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31933-33137.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.31885-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31885-33191.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.31897-33185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33185.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.31888-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31888-33191.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.31879-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31879-33191.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.31897-33191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.31897-33191.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.for.35179-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35179-36215.gi%7C284087655%7Cgb%7CEFC41323%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.for.35182-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35182-36185.gi%7C284094750%7Cgb%7CEFC48383%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.for.35185-36215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35185-36215.gi%7C284093665%7Cgb%7CEFC47302%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.for.35167-36194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35167-36194.gi%7C284083002%7Cgb%7CEFC36710%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.for.35200-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35200-36185.gi%7C284096189%7Cgb%7CEFC49818%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.for.35194-36119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36119.gi%7C284097268%7Cgb%7CEFC50895%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.for.35194-36185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.35194-36185.gi%7C284087657%7Cgb%7CEFC41325%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.53623-54797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53623-54797.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.53641-54773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.53641-54773.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.for.97321-99173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.97321-99173.gi%7C284088718%7Cgb%7CEFC42380%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.for.102638-105144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.102638-105144.gi%7C284088128%7Cgb%7CEFC41793%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.for.122538-123964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.122538-123964.gi%7C284087793%7Cgb%7CEFC41460%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.127758-128797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.127758-128797.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.for.129955-132404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.129955-132404.gi%7C284092450%7Cgb%7CEFC46092%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.for.130477-132494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130477-132494.gi%7C284092967%7Cgb%7CEFC46607%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.for.130348-132413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C9.130348-132413.gi%7C284095326%7Cgb%7CEFC48957%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:10 now processing 0
total clusters:10 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:10 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:10 now processing 0
total clusters:10 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:10 now processing 0
total clusters:10 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 12
...processing 1 of 12
...processing 2 of 12
...processing 3 of 12
...processing 4 of 12
...processing 5 of 12
...processing 6 of 12
...processing 7 of 12
...processing 8 of 12
...processing 9 of 12
...processing 10 of 12
...processing 11 of 12
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:9 now processing 0
total clusters:9 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:20 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:20 now processing 0
total clusters:20 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2527-3444.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20587-21452.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23565-25687.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.32078-32991.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35393-36315.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.44759-45610.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49353-50561.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.76510-79797.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.84168-85294.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.95633-96616.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.101574-103179.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.115045-116020.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.122667-123801.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.129957-132294.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.137252-141129.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.141596-142878.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.3655-5732.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.7392-8353.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8468-9593.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15900-16956.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.30678-31613.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.44776-46068.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.46936-47876.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.61201-62045.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.68048-70359.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.71228-72366.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.97520-98973.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.102837-104944.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.105082-106541.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.127632-128597.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.134207-135054.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.140715-141618.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C10
Length: 41445
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C10.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:0 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7990%7C%3Ap.for.1-1325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-1325.Ar_EST_120301b_c7990%7C%3Ap.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20004%7Crr3c854jq.for.1-895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.1-895.Ar_EST_120301b_c20004%7Crr3c854jq.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15326%7Cccts.for.3101-4431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.3101-4431.Ar_EST_120301b_c15326%7Cccts.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10775%7Csjs.for.4244-5630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4244-5630.Ar_EST_120301b_c10775%7Csjs.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18609%7Ctim-barrel.for.4880-6450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.4880-6450.Ar_EST_120301b_c18609%7Ctim-barrel.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14489%7Cround.for.8011-9359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.8011-9359.Ar_EST_120301b_c14489%7Cround.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5030%7Cthaumatin-like.for.13925-15433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15433.Ar_EST_120301b_rep_c5030%7Cthaumatin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11177%7C---NA---.for.14867-16020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14867-16020.Ar_EST_120301b_c11177%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3649%7Cthaumatin-like.for.14119-16160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.14119-16160.Ar_EST_120301b_c3649%7Cthaumatin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5431%7Cthaumatin-like.for.13925-15654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.13925-15654.Ar_EST_120301b_rep_c5431%7Cthaumatin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17044%7Cdiphthamide.for.16149-17668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.16149-17668.Ar_EST_120301b_c17044%7Cdiphthamide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c438%7Cpredicted.for.18557-20020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18557-20020.Ar_EST_120301b_c438%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig292%7Cpredicted.for.20140-22013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20140-22013.120301b_Contig292%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15990%7Cpredicted.for.20407-21603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.20407-21603.Ar_EST_120301b_c15990%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig108%7Cprotein.for.23629-25513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23629-25513.120301b_Contig108%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1336%7Cprotein.for.23583-25036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23583-25036.Ar_EST_120301b_c1336%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12861%7Couter.for.26766-28223.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.26766-28223.Ar_EST_120301b_c12861%7Couter.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8318%7Corigin.for.33442-35248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.33442-35248.Ar_EST_120301b_c8318%7Corigin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15788%7Cprotein.for.35397-36741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35397-36741.Ar_EST_120301b_c15788%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15057%7Chypothetical.for.37196-38399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.37196-38399.Ar_EST_120301b_c15057%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13382%7Cankyrin.for.38547-39913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.38547-39913.Ar_EST_120301b_c13382%7Cankyrin.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:1 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:4 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:1 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:1 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:0 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9B/64/AR_HYBRID_130113_TINTIN_EF2ON_C10//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C10/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:5 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.for.11234-13175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.11234-13175.gi%7C284090147%7Cgb%7CEFC43800%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.for.18566-20543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.18566-20543.gi%7C284090178%7Cgb%7CEFC43831%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.23716-25578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.23716-25578.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.for.31780-34157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34157.gi%7C284093311%7Cgb%7CEFC46949%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.for.31780-34052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.31780-34052.gi%7C284095584%7Cgb%7CEFC49214%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.35715-36694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35715-36694.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.for.35605-36721.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C10.35605-36721.gi%7C284088638%7Cgb%7CEFC42300%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:2 now processing 0
total clusters:2 now processing 0
...processing 0 of 2
...processing 1 of 2
cleaning clusters....
total clusters:2 now processing 0
total clusters:2 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:5 now processing 0
total clusters:5 now processing 0
total clusters:5 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:5 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:5 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1125.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3300-4231.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.4443-5430.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14124-15960.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.16348-17526.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18756-21813.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.23782-25313.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.26965-28023.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33641-35048.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.35596-36541.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.5079-6250.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.8210-9159.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.15066-15820.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.31979-33957.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C11
Length: 25661
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C11.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:0 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12658%7Csurface.for.11183-12467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.11183-12467.Ar_EST_120301b_c12658%7Csurface.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17333%7C---NA---.for.12804-13730.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.12804-13730.Ar_EST_120301b_c17333%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1625%7Cpredicted.for.13250-14650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13250-14650.Ar_EST_120301b_c1625%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10919%7Chistone.for.13946-15700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.13946-15700.Ar_EST_120301b_c10919%7Chistone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9390%7Cniemann-pick.for.23587-25127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23587-25127.Ar_EST_120301b_c9390%7Cniemann-pick.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c579%7Cpatched.for.24367-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.24367-25661.Ar_EST_120301b_c579%7Cpatched.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2814%7Cniemann-pick.for.23796-25595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23796-25595.Ar_EST_120301b_c2814%7Cniemann-pick.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:4 now processing 0
total clusters:4 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:4 now processing 0
total clusters:4 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:14 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:14 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:22 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:37 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:19 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:19 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:19 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:25 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:18 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/03/CC/AR_HYBRID_130113_TINTIN_EF2ON_C11//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C11/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:10 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.335-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.335-2502.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.539-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2493.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.512-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2502.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.551-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2454.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.521-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.521-2502.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.161-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.161-2502.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.557-2670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.557-2670.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.671-2022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.671-2022.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.554-2562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.554-2562.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.548-2502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2502.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.524-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.524-2553.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.539-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.539-2508.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.551-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2505.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.512-2505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.512-2505.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.for.551-2406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2406.gi%7C284085285%7Cgb%7CEFC38970%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.551-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2493.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.for.551-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2475.gi%7C284088717%7Cgb%7CEFC42379%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.548-2499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2499.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.for.551-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2472.gi%7C284081579%7Cgb%7CEFC35529%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.545-2508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.545-2508.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.548-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2472.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.506-2481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.506-2481.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.551-2484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.551-2484.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.494-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.494-2511.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.452-2454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.452-2454.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.548-2493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2493.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.668-2457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.668-2457.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.479-2472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.479-2472.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.536-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.536-2511.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.488-2541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.488-2541.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.for.542-2475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.542-2475.gi%7C284095044%7Cgb%7CEFC48676%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.530-2553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.530-2553.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.548-2511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.548-2511.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.584-2448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.584-2448.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.for.17759-19557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.17759-19557.gi%7C284084868%7Cgb%7CEFC38556%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.for.19699-21620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.19699-21620.gi%7C284096986%7Cgb%7CEFC50613%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.for.23527-25661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C11.23527-25661.gi%7C284085045%7Cgb%7CEFC38732%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
total clusters:3 now processing 0
total clusters:3 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
total clusters:3 now processing 0
total clusters:3 now processing 0
...processing 0 of 32
...processing 1 of 32
...processing 2 of 32
...processing 3 of 32
...processing 4 of 32
...processing 5 of 32
...processing 6 of 32
...processing 7 of 32
...processing 8 of 32
...processing 9 of 32
...processing 10 of 32
...processing 11 of 32
...processing 12 of 32
...processing 13 of 32
...processing 14 of 32
...processing 15 of 32
...processing 16 of 32
...processing 17 of 32
...processing 18 of 32
...processing 19 of 32
...processing 20 of 32
...trimming the rest
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
total clusters:3 now processing 0
total clusters:3 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
...processing 0 of 20
...processing 1 of 20
...processing 2 of 20
...processing 3 of 20
...processing 4 of 20
...processing 5 of 20
...processing 6 of 20
...processing 7 of 20
...processing 8 of 20
...processing 9 of 20
...processing 10 of 20
...processing 11 of 20
...processing 12 of 20
...processing 13 of 20
...processing 14 of 20
...processing 15 of 20
...processing 16 of 20
...processing 17 of 20
...processing 18 of 20
...processing 19 of 20
...trimming the rest
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:3 now processing 0
total clusters:3 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.11382-12267.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.19898-21420.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23726-25661.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.651-2335.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.13449-15575.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C12
Length: 151965
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:5 current j:0
j_size:5 current j:1
j_size:5 current j:2
j_size:5 current j:3
j_size:5 current j:4
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C12.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:10 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:4 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c728%7C600592206f1.for.1-1027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1-1027.Ar_EST_120301b_c728%7C600592206f1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20258%7Cfq662406.for.1273-3642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.1273-3642.Ar_EST_120301b_c20258%7Cfq662406.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11238%7Cwith.for.3899-5314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3899-5314.Ar_EST_120301b_c11238%7Cwith.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig287%7Cwith.for.4446-6729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4446-6729.120301b_Contig287%7Cwith.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4923%7Cconserved.for.5017-6047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.5017-6047.Ar_EST_120301b_rep_c4923%7Cconserved.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c378%7Ccbnf.for.6989-8771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.6989-8771.Ar_EST_120301b_c378%7Ccbnf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3189%7Cdiaphanous-related.for.7781-9843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.7781-9843.Ar_EST_120301b_c3189%7Cdiaphanous-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1550%7Cdiaphanous-related.for.9665-11058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.9665-11058.Ar_EST_120301b_c1550%7Cdiaphanous-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11195%7Cmagnesium.for.24231-25451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24231-25451.Ar_EST_120301b_c11195%7Cmagnesium.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18198%7Creplication.for.26279-27668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26279-27668.Ar_EST_120301b_c18198%7Creplication.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18234%7Cham.for.26021-27411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26021-27411.Ar_EST_120301b_c18234%7Cham.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13712%7Creplication.for.27060-28313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.27060-28313.Ar_EST_120301b_c13712%7Creplication.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9222%7Creplication.for.28102-29380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28102-29380.Ar_EST_120301b_c9222%7Creplication.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c527%7CPREDICTED%3A.for.28874-30302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.28874-30302.Ar_EST_120301b_c527%7CPREDICTED%3A.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1382%7Cprotein.for.30821-32102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.30821-32102.Ar_EST_120301b_c1382%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c651%7C40s.for.32109-34724.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32109-34724.Ar_EST_120301b_c651%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15484%7C---NA---.for.32165-33345.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.32165-33345.Ar_EST_120301b_c15484%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4119%7Cmhck.for.36707-38256.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36707-38256.Ar_EST_120301b_rep_c4119%7Cmhck.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10138%7Cmhck.for.37169-38246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37169-38246.Ar_EST_120301b_rep_c10138%7Cmhck.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15620%7Cmhck.for.37202-38226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.37202-38226.Ar_EST_120301b_rep_c15620%7Cmhck.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5645%7Cmhck.for.36710-38207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.36710-38207.Ar_EST_120301b_rep_c5645%7Cmhck.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1100%7Chypothetical.for.38822-40252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.38822-40252.Ar_EST_120301b_c1100%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.40496-42494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.40496-42494.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.41083-42501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.41083-42501.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11844%7Csymbiotic.for.45845-47323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.45845-47323.Ar_EST_120301b_c11844%7Csymbiotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18328%7Chypothetical.for.47200-48548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.47200-48548.Ar_EST_120301b_c18328%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15267%7C---NA---.for.48658-49505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.48658-49505.Ar_EST_120301b_c15267%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9869%7Ccell.for.51245-52959.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.51245-52959.Ar_EST_120301b_c9869%7Ccell.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17405%7Ccell.for.52390-53708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.52390-53708.Ar_EST_120301b_c17405%7Ccell.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2712%7Cprotein.for.53486-55207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53486-55207.Ar_EST_120301b_c2712%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2244%7Cphosphomannomutase.for.54527-56081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54527-56081.Ar_EST_120301b_c2244%7Cphosphomannomutase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12102%7C---NA---.for.55329-56645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55329-56645.Ar_EST_120301b_c12102%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig305%7C78.for.59657-62478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59657-62478.120301b_Contig305%7C78.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20111%7Cgtp-binding.for.60232-61394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60232-61394.Ar_EST_120301b_rep_c20111%7Cgtp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12799%7Cheat.for.59885-61210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59885-61210.Ar_EST_120301b_rep_c12799%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5590%7Cglucose.for.59659-61634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59659-61634.Ar_EST_120301b_rep_c5590%7Cglucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5697%7Cluminal.for.60638-62264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.60638-62264.Ar_EST_120301b_rep_c5697%7Cluminal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c730%7Cpeptidyl-prolyl.for.62422-63765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62422-63765.Ar_EST_120301b_c730%7Cpeptidyl-prolyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16254%7Cbx752014.for.68805-70068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.68805-70068.Ar_EST_120301b_c16254%7Cbx752014.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2267%7C3-hydroxyacyl-.for.74154-75649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74154-75649.Ar_EST_120301b_c2267%7C3-hydroxyacyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10600%7Cshort-chain.for.74398-75478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74398-75478.Ar_EST_120301b_c10600%7Cshort-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11679%7C---NA---.for.76004-77182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.76004-77182.Ar_EST_120301b_c11679%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4144%7Czinc.for.77468-79097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77468-79097.Ar_EST_120301b_rep_c4144%7Czinc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5140%7Cnotch.for.77764-79199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.77764-79199.Ar_EST_120301b_rep_c5140%7Cnotch.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11995%7Csensitivity.for.78617-80004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.78617-80004.Ar_EST_120301b_c11995%7Csensitivity.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18400%7Cprotein.for.83478-84841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.83478-84841.Ar_EST_120301b_c18400%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14469%7Cprotein.for.84247-85627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.84247-85627.Ar_EST_120301b_c14469%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3303%7Cmolybdenum.for.91771-93085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.91771-93085.Ar_EST_120301b_c3303%7Cmolybdenum.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig225%7Cmolybdenum.for.90117-92666.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90117-92666.120301b_Contig225%7Cmolybdenum.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10477%7Cpa-phosphatase.for.93514-95251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93514-95251.Ar_EST_120301b_c10477%7Cpa-phosphatase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9955%7Cmeloidogyne.for.93697-94715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.93697-94715.Ar_EST_120301b_c9955%7Cmeloidogyne.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11581%7Cprotein.for.94100-95577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94100-95577.Ar_EST_120301b_c11581%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19576%7Cfusca.for.94823-96350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94823-96350.Ar_EST_120301b_rep_c19576%7Cfusca.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig170%7Cprotein.for.94827-96951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94827-96951.120301b_Contig170%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7131%7Cferrichrome.for.96302-97853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97853.Ar_EST_120301b_rep_c7131%7Cferrichrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13182%7C---NA---.for.96455-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96455-97783.Ar_EST_120301b_rep_c13182%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c6331%7Ccu619418.for.96329-97526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96329-97526.Ar_EST_120301b_c6331%7Ccu619418.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig502%7Cferrichrome.for.96303-97897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96303-97897.120301b_Contig502%7Cferrichrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9400%7Cmus06-.for.96344-97727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96344-97727.Ar_EST_120301b_rep_c9400%7Cmus06-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12703%7Cdisulfide.for.96546-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96546-97781.Ar_EST_120301b_rep_c12703%7Cdisulfide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5321%7C-.for.96317-97706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96317-97706.Ar_EST_120301b_rep_c5321%7C-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11637%7Ccczb.for.96273-97722.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96273-97722.Ar_EST_120301b_rep_c11637%7Ccczb.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15753%7Coligopeptide.for.96409-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96409-97810.Ar_EST_120301b_rep_c15753%7Coligopeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5757%7Cdisulfide.for.96700-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96700-97781.Ar_EST_120301b_rep_c5757%7Cdisulfide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13003%7Ce3.for.96709-97781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96709-97781.Ar_EST_120301b_rep_c13003%7Ce3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6679%7C9787.for.96302-97783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97783.Ar_EST_120301b_rep_c6679%7C9787.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.for.96641-97769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96641-97769.Ar_EST_120301b_rep_c12673%7Cubiquitin-protein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4609%7Cprotein.for.96302-97810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96302-97810.Ar_EST_120301b_rep_c4609%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15179%7C---NA---.for.96524-97715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.96524-97715.Ar_EST_120301b_rep_c15179%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14025%7C---NA---.for.98770-99965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.98770-99965.Ar_EST_120301b_c14025%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig23%7Cprotein.for.100923-102492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.100923-102492.120301b_Contig23%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15597%7Cgpgc_est01533.for.102951-104268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.102951-104268.Ar_EST_120301b_c15597%7Cgpgc_est01533.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14029%7Ccbwo.for.103484-104861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.103484-104861.Ar_EST_120301b_c14029%7Ccbwo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1391%7Cmonothiol.for.105135-106412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105135-106412.Ar_EST_120301b_c1391%7Cmonothiol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11256%7Cbipolar.for.107074-109113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.107074-109113.Ar_EST_120301b_c11256%7Cbipolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10687%7C---NA---.for.108374-109747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.108374-109747.Ar_EST_120301b_c10687%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.for.110002-111393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110002-111393.Ar_EST_120301b_c11166%7Cphosphatidylethanolamine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.for.110586-111697.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.110586-111697.Ar_EST_120301b_c15500%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.for.111061-112546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.111061-112546.120301b_Contig910%7Cphosphatidylethanolaminen-methyltransferase-lik.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig127%7Csh3.for.113661-115293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113661-115293.120301b_Contig127%7Csh3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig422%7Csh3.for.114866-116880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.114866-116880.120301b_Contig422%7Csh3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7745%7Cdedicator.for.116151-118278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.116151-118278.Ar_EST_120301b_c7745%7Cdedicator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.118339-119509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.118339-119509.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1228%7Cdedicator.for.117330-119916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.117330-119916.120301b_Contig1228%7Cdedicator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18015%7Cinosine-uridine.for.119625-120965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.119625-120965.Ar_EST_120301b_c18015%7Cinosine-uridine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2577%7Cprotein.for.124415-126298.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.124415-126298.Ar_EST_120301b_c2577%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9484%7C1533272.for.125735-126997.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.125735-126997.Ar_EST_120301b_c9484%7C1533272.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8218%7Cprotein.for.126743-128790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.126743-128790.Ar_EST_120301b_c8218%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13412%7C---NA---.for.128342-129516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.128342-129516.Ar_EST_120301b_c13412%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19599%7Chec.for.129431-130776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129431-130776.Ar_EST_120301b_c19599%7Chec.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8962%7Cchromosome.for.129082-130441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.129082-130441.Ar_EST_120301b_c8962%7Cchromosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2192%7Cphosphatidic.for.135132-136930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.135132-136930.Ar_EST_120301b_c2192%7Cphosphatidic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.for.136433-137418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136433-137418.Ar_EST_120301b_c15138%7Clib4217-068-r1-k1-b1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15263%7C---NA---.for.136631-137561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.136631-137561.Ar_EST_120301b_rep_c15263%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2905%7C---NA---.for.137181-139024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.137181-139024.Ar_EST_120301b_c2905%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig48%7C---NA---.for.138537-140647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.138537-140647.120301b_Contig48%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16578%7Csigmae.for.149378-151076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.149378-151076.Ar_EST_120301b_c16578%7Csigmae.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17410%7Ctetratricopeptide.for.150544-151872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150544-151872.Ar_EST_120301b_c17410%7Ctetratricopeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18065%7Ctetratricopeptide.for.150570-151821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.150570-151821.Ar_EST_120301b_c18065%7Ctetratricopeptide.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:46 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:46 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:26 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:40 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:48 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/EB/AR_HYBRID_130113_TINTIN_EF2ON_C12//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C12/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:36 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.for.3581-5384.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.3581-5384.gi%7C284093495%7Cgb%7CEFC47133%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.for.4015-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4015-5161.gi%7C284090291%7Cgb%7CEFC43943%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.4027-5218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5218.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.for.4027-5155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.4027-5155.gi%7C284097132%7Cgb%7CEFC50759%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.for.24248-26025.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.24248-26025.gi%7C284091842%7Cgb%7CEFC45487%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.for.26817-29382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.26817-29382.gi%7C284092123%7Cgb%7CEFC45766%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.for.29087-30486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.29087-30486.gi%7C284083554%7Cgb%7CEFC37256%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C284084643%7Cgb%7CEFC38333%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C1705642%7Csp%7CP53441%2E1%7CCATR_NAEGR.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C972963%7Cgb%7CAAA75032%2E1%7C.for.49616-50949.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49616-50949.gi%7C972963%7Cgb%7CAAA75032%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.for.49598-50883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.49598-50883.gi%7C284091881%7Cgb%7CEFC45525%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.for.53762-55182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.53762-55182.gi%7C284086029%7Cgb%7CEFC39708%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.for.54553-56087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.54553-56087.gi%7C284094206%7Cgb%7CEFC47841%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.55858-60224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55858-60224.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.56017-60167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56017-60167.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.55819-60119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55819-60119.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.55768-60191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.55768-60191.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.56092-57512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.56092-57512.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.59738-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59738-62358.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.59918-62361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59918-62361.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.59996-62367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59996-62367.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.59813-62445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59813-62445.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.59685-62454.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59685-62454.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.59762-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59762-62358.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.59726-62358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.59726-62358.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.62542-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62542-63800.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.62548-63833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62548-63833.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.62728-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62728-63800.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.62734-63803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63803.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.62734-63800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.62734-63800.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.for.74105-75710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.74105-75710.gi%7C284089438%7Cgb%7CEFC43095%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.82024-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82024-83787.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.82054-84055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82054-84055.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.for.82090-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82090-83787.gi%7C284092256%7Cgb%7CEFC45899%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.82117-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82117-83787.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.82021-83802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82021-83802.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.for.82018-83766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83766.gi%7C284087115%7Cgb%7CEFC40787%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.82018-83781.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82018-83781.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.for.82087-84040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82087-84040.gi%7C284093068%7Cgb%7CEFC46707%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.82030-83805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82030-83805.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.82084-83787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82084-83787.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.for.80395-84052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.80395-84052.gi%7C284090654%7Cgb%7CEFC44305%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.82108-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82108-83763.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.82003-83778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.82003-83778.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.85626-86563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.85626-86563.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.for.90734-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.90734-91704.gi%7C284084726%7Cgb%7CEFC38415%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.for.92844-94195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.92844-94195.gi%7C284088468%7Cgb%7CEFC42131%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.for.94814-96942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.94814-96942.gi%7C284086633%7Cgb%7CEFC40308%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.for.105234-106381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105234-106381.gi%7C284096908%7Cgb%7CEFC50535%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.for.105883-107777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105883-107777.gi%7C284089747%7Cgb%7CEFC43403%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.106003-107663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.106003-107663.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.for.105853-107771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105853-107771.gi%7C284094373%7Cgb%7CEFC48007%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.for.105874-108389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-108389.gi%7C284093549%7Cgb%7CEFC47186%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.105874-107756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105874-107756.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.105868-107768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105868-107768.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.105982-107687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.105982-107687.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.for.109953-112547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.109953-112547.gi%7C284084300%7Cgb%7CEFC37994%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.for.113649-119929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.113649-119929.gi%7C284093284%7Cgb%7CEFC46922%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.for.147396-149152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C12.147396-149152.gi%7C284092928%7Cgb%7CEFC46568%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:18 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:18 now processing 0
...processing 0 of 11
...processing 1 of 11
...processing 2 of 11
...processing 3 of 11
...processing 4 of 11
...processing 5 of 11
...processing 6 of 11
...processing 7 of 11
...processing 8 of 11
...processing 9 of 11
...processing 10 of 11
total clusters:18 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:18 now processing 0
total clusters:18 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:16 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:16 now processing 0
...processing 0 of 11
...processing 1 of 11
...processing 2 of 11
...processing 3 of 11
...processing 4 of 11
...processing 5 of 11
...processing 6 of 11
...processing 7 of 11
...processing 8 of 11
...processing 9 of 11
...processing 10 of 11
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
total clusters:16 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:25 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:25 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1472-3444.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3780-6529.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7980-10858.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.24430-25871.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.26082-29425.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40695-42306.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.46044-47123.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53685-55887.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.76160-76982.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.77639-79020.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.83677-85427.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.90316-92885.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93043-95377.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103150-104661.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.105334-109562.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.113848-119729.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.119765-120770.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.124614-126828.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.126942-129316.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.135331-136730.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.147595-150876.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.0-827.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.29073-30289.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.31020-31920.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.32362-33211.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.36906-38056.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.47399-48348.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.49797-50749.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.51444-53529.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55528-62278.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.62621-63668.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.69004-69868.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.74304-75510.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.78816-79874.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.80594-83855.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.95013-97791.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.101122-102292.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.110152-112347.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.129281-130576.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.136620-137227.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.137380-140447.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.150743-151676.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C13
Length: 94253
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:3 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C13.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:1 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3661%7Cddb1-.for.1745-3537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1745-3537.Ar_EST_120301b_c3661%7Cddb1-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig808%7Carv1-like.for.2831-4363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.2831-4363.120301b_Contig808%7Carv1-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18040%7Chydra.for.8499-9557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.8499-9557.Ar_EST_120301b_c18040%7Chydra.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9342%7Cheat.for.12830-13893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.12830-13893.Ar_EST_120301b_c9342%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12165%7Capoptosis.for.13946-15307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.13946-15307.Ar_EST_120301b_c12165%7Capoptosis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1412%7Cprotein.for.15657-17513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.15657-17513.Ar_EST_120301b_c1412%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17790%7Ceimeria.for.16740-18028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.16740-18028.Ar_EST_120301b_c17790%7Ceimeria.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15312%7Cpredicted.for.17459-19020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.17459-19020.Ar_EST_120301b_c15312%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1936%7Cbeta-catenin-like.for.20721-22008.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.20721-22008.Ar_EST_120301b_c1936%7Cbeta-catenin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16537%7C---NA---.for.21351-22641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.21351-22641.Ar_EST_120301b_c16537%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15992%7C---NA---.for.22668-23828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.22668-23828.Ar_EST_120301b_c15992%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14531%7Chfmidgut6l20.for.23049-24066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23049-24066.Ar_EST_120301b_c14531%7Chfmidgut6l20.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20424%7Cserine.for.24027-26914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24027-26914.Ar_EST_120301b_c20424%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15621%7C---NA---.for.26261-27545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26261-27545.Ar_EST_120301b_c15621%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1943%7Cunnamed.for.26952-28306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.26952-28306.Ar_EST_120301b_c1943%7Cunnamed.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3269%7Cvacuolar.for.30273-32149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30273-32149.Ar_EST_120301b_c3269%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig152%7Cpredicted.for.31784-33714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.31784-33714.120301b_Contig152%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2300%7Cpolysaccharide.for.32622-34650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.32622-34650.Ar_EST_120301b_c2300%7Cpolysaccharide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig777%7Cpredicted.for.34309-36092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.34309-36092.120301b_Contig777%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig734%7Cnucleolar.for.37670-39974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37670-39974.120301b_Contig734%7Cnucleolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14475%7Cnucleolar.for.38061-39162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.38061-39162.Ar_EST_120301b_c14475%7Cnucleolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10418%7Cdna.for.40207-41624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40207-41624.Ar_EST_120301b_c10418%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3221%7Cdna.for.41131-43095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.41131-43095.Ar_EST_120301b_c3221%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6645%7Csmall.for.42492-44013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42492-44013.Ar_EST_120301b_rep_c6645%7Csmall.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6374%7Csmall.for.42392-44097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42392-44097.Ar_EST_120301b_rep_c6374%7Csmall.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5931%7Cg.for.44474-45483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.44474-45483.Ar_EST_120301b_rep_c5931%7Cg.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4250%7Cg.for.43755-45604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43755-45604.Ar_EST_120301b_rep_c4250%7Cg.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1287%7Cbeta.for.45114-47502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45114-47502.120301b_Contig1287%7Cbeta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14505%7C---NA---.for.46909-47898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.46909-47898.Ar_EST_120301b_c14505%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8556%7Cglucose.for.49309-50844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49309-50844.Ar_EST_120301b_c8556%7Cglucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18986%7Ctrna.for.49922-51161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.49922-51161.Ar_EST_120301b_c18986%7Ctrna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15011%7Cc-myc-binding.for.50825-51971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50825-51971.Ar_EST_120301b_c15011%7Cc-myc-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16329%7Cp-type.for.54519-56067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54519-56067.Ar_EST_120301b_c16329%7Cp-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig987%7Cdomain.for.55418-56940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.55418-56940.120301b_Contig987%7Cdomain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c399%7Cp-type.for.57171-58500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57171-58500.Ar_EST_120301b_c399%7Cp-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8892%7Ctransmembrane.for.57005-58272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57005-58272.Ar_EST_120301b_c8892%7Ctransmembrane.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14963%7Cras.for.57852-59231.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.57852-59231.Ar_EST_120301b_c14963%7Cras.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11353%7Cphosphatidylserine.for.62457-63750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62457-63750.Ar_EST_120301b_c11353%7Cphosphatidylserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9953%7Cphosphatidylserine.for.62954-64357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62954-64357.Ar_EST_120301b_c9953%7Cphosphatidylserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15385%7Cconserved.for.64079-65170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.64079-65170.Ar_EST_120301b_c15385%7Cconserved.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8704%7Cpeptidyl-trna.for.65595-67100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.65595-67100.Ar_EST_120301b_c8704%7Cpeptidyl-trna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.for.66461-67517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66461-67517.Ar_EST_120301b_rep_c19991%7Ccalcium-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2912%7Ctransmembrane.for.66454-67702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66454-67702.Ar_EST_120301b_c2912%7Ctransmembrane.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14174%7Cfq834760.for.67005-68053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.67005-68053.Ar_EST_120301b_rep_c14174%7Cfq834760.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19420%7Cactin.for.72710-73909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.72710-73909.Ar_EST_120301b_c19420%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12691%7Calpha.for.73546-74865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.73546-74865.Ar_EST_120301b_c12691%7Calpha.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12365%7Cfp681517.for.74084-75586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.74084-75586.Ar_EST_120301b_c12365%7Cfp681517.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2440%7Cphosphatase.for.78688-80647.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78688-80647.Ar_EST_120301b_c2440%7Cphosphatase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9114%7Cvesicle.for.79865-81214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.79865-81214.Ar_EST_120301b_c9114%7Cvesicle.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig581%7Crcc1.for.82337-85302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.82337-85302.120301b_Contig581%7Crcc1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c339%7Cequilibrative.for.87822-89970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87822-89970.Ar_EST_120301b_c339%7Cequilibrative.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.for.87888-88867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.87888-88867.Ar_EST_120301b_rep_c14139%7Cftfucp0006h12_f_phred13_vc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c457%7Cprotein.for.89276-90684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.89276-90684.Ar_EST_120301b_c457%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18026%7Ccalponin.for.90716-92075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90716-92075.Ar_EST_120301b_c18026%7Ccalponin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1402%7Ccalponin.for.90627-92043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90627-92043.Ar_EST_120301b_c1402%7Ccalponin.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:47 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:48 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:46 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:55 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:57 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:44 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:59 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:48 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C7/46/AR_HYBRID_130113_TINTIN_EF2ON_C13//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C13/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:32 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.for.1746-3262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3262.gi%7C284081691%7Cgb%7CEFC35595%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.for.1746-3073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.1746-3073.gi%7C284081706%7Cgb%7CEFC35605%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.6248-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6248-8048.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.6401-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6401-8048.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.for.6314-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6314-8048.gi%7C284085654%7Cgb%7CEFC39336%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.for.6284-8048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6284-8048.gi%7C284091439%7Cgb%7CEFC45086%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.6371-8036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6371-8036.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.for.6302-7785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6302-7785.gi%7C284086972%7Cgb%7CEFC40645%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.for.6392-7782.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.6392-7782.gi%7C284093767%7Cgb%7CEFC47404%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.for.18491-20354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18491-20354.gi%7C284090520%7Cgb%7CEFC44171%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.18503-19993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18503-19993.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.for.18542-20120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18542-20120.gi%7C284089795%7Cgb%7CEFC43450%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.18494-20360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18494-20360.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.for.18488-19705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.18488-19705.gi%7C284084776%7Cgb%7CEFC38465%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.for.24189-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25692.gi%7C284087916%7Cgb%7CEFC41583%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.for.24189-25710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25710.gi%7C284088036%7Cgb%7CEFC41702%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.for.24192-25698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25698.gi%7C284093143%7Cgb%7CEFC46782%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.for.24338-25701.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24338-25701.gi%7C284085578%7Cgb%7CEFC39261%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.for.24398-25704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24398-25704.gi%7C284084873%7Cgb%7CEFC38561%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.for.24192-25683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25683.gi%7C284083993%7Cgb%7CEFC37690%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.for.24189-25560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25560.gi%7C284096422%7Cgb%7CEFC50050%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.24192-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24192-25692.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.for.24189-25689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25689.gi%7C284091020%7Cgb%7CEFC44669%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.for.23972-25725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.23972-25725.gi%7C284096438%7Cgb%7CEFC50066%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.for.24189-25344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25344.gi%7C284093840%7Cgb%7CEFC47476%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.for.24180-25692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24180-25692.gi%7C284088894%7Cgb%7CEFC42555%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284091589%7Cgb%7CEFC45235%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.24467-25479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24467-25479.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.for.24189-25677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.24189-25677.gi%7C284090020%7Cgb%7CEFC43674%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.for.28936-30463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.28936-30463.gi%7C284089972%7Cgb%7CEFC43626%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.for.30291-32151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.30291-32151.gi%7C284086548%7Cgb%7CEFC40224%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.for.37878-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37878-39943.gi%7C284087802%7Cgb%7CEFC41469%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.for.37914-39934.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.37914-39934.gi%7C284085561%7Cgb%7CEFC39244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.for.40044-43012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.40044-43012.gi%7C284087851%7Cgb%7CEFC41518%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.for.42455-43652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.42455-43652.gi%7C284097222%7Cgb%7CEFC50849%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.for.43749-45472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45472.gi%7C284086625%7Cgb%7CEFC40300%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284083255%7Cgb%7CEFC36960%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.for.43749-45616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45616.gi%7C284086635%7Cgb%7CEFC40310%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.for.43749-45412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.43749-45412.gi%7C284084290%7Cgb%7CEFC37984%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.for.45082-47466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.45082-47466.gi%7C284089955%7Cgb%7CEFC43609%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.for.48907-51063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.48907-51063.gi%7C284089829%7Cgb%7CEFC43484%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.for.50900-51968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.50900-51968.gi%7C284089812%7Cgb%7CEFC43467%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.for.54523-58496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54523-58496.gi%7C284088559%7Cgb%7CEFC42222%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.for.54475-58466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.54475-58466.gi%7C284083620%7Cgb%7CEFC37321%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.for.58139-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59411.gi%7C284095187%7Cgb%7CEFC48819%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.58145-59459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58145-59459.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.for.58079-59411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58079-59411.gi%7C284088877%7Cgb%7CEFC42538%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.for.58136-59432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59432.gi%7C284097251%7Cgb%7CEFC50878%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.for.58139-59423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58139-59423.gi%7C284096640%7Cgb%7CEFC50267%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.58136-59444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.58136-59444.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.for.62510-64790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.62510-64790.gi%7C284083114%7Cgb%7CEFC36821%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.for.66491-67593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.66491-67593.gi%7C284091204%7Cgb%7CEFC44852%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.for.70944-72178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.70944-72178.gi%7C284089467%7Cgb%7CEFC43124%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284091753%7Cgb%7CEFC45398%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.for.78710-80052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78710-80052.gi%7C284094302%7Cgb%7CEFC47936%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.for.78704-80046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.78704-80046.gi%7C284089980%7Cgb%7CEFC43634%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284083305%7Cgb%7CEFC37010%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284086189%7Cgb%7CEFC39867%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.for.90489-92214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C13.90489-92214.gi%7C284082382%7Cgb%7CEFC36106%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:18 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1925-4163.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8698-9606.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14145-15107.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.15856-20160.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20920-22441.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24226-26714.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.29135-30263.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.40243-43899.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.54674-59244.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.65794-66900.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.78887-80447.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88021-89770.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90909-91875.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.6570-7836.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.13029-13693.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.22867-23866.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.26460-28106.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.30472-31951.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.31983-35892.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.37681-39774.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43948-47698.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49106-50961.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.51024-51988.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62656-64590.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.71143-71978.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.73745-75386.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.80064-81014.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.82536-85102.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89475-90484.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.90688-92014.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C15
Length: 88282
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:5 current j:0
j_size:5 current j:1
j_size:5 current j:2
j_size:5 current j:3
j_size:5 current j:4
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C15.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:6 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.1-1127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.1-1127.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.for.3186-4275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.3186-4275.Ar_EST_120301b_c10644%7Cclaudia-husseneder_plate25-d09.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7062%7Cprotein.for.9348-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10762.Ar_EST_120301b_rep_c7062%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20489%7Cprotein.for.9348-10472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9348-10472.Ar_EST_120301b_rep_c20489%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19779%7Cprotein.for.9460-10762.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9460-10762.Ar_EST_120301b_rep_c19779%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6989%7Cprotein.for.9353-10747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9353-10747.Ar_EST_120301b_rep_c6989%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7201%7Cprotein.for.9452-10750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9452-10750.Ar_EST_120301b_rep_c7201%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20535%7C40s.for.9635-10758.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9635-10758.Ar_EST_120301b_rep_c20535%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c847%7Csphingomyelin.for.16096-17482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.16096-17482.Ar_EST_120301b_c847%7Csphingomyelin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15302%7Camp-dependent.for.17102-18099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18099.Ar_EST_120301b_c15302%7Camp-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8900%7Cpropionate--.for.17355-18785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17355-18785.Ar_EST_120301b_c8900%7Cpropionate--.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12453%7Cras-related.for.18577-19838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.18577-19838.Ar_EST_120301b_c12453%7Cras-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c101%7Chormone.for.20132-22409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.20132-22409.Ar_EST_120301b_c101%7Chormone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3533%7Clipase.for.21106-23324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.21106-23324.Ar_EST_120301b_c3533%7Clipase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10006%7Cau284314.for.23945-25162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.23945-25162.Ar_EST_120301b_rep_c10006%7Cau284314.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3682%7Cnegative.for.24459-26498.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.24459-26498.Ar_EST_120301b_c3682%7Cnegative.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig488%7Cv-type.for.25755-27402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25755-27402.120301b_Contig488%7Cv-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19184%7Cat3g58730-like.for.25880-27038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25880-27038.Ar_EST_120301b_c19184%7Cat3g58730-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12067%7Cfn735362.for.27398-28751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.27398-28751.Ar_EST_120301b_c12067%7Cfn735362.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4543%7Cv-type.for.28132-30143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28132-30143.Ar_EST_120301b_rep_c4543%7Cv-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6117%7Cv-type.for.28143-30220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28143-30220.Ar_EST_120301b_rep_c6117%7Cv-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6452%7Cv-atpase.for.28152-29423.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28152-29423.Ar_EST_120301b_rep_c6452%7Cv-atpase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16840%7Cstructural.for.29632-31068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29632-31068.Ar_EST_120301b_c16840%7Cstructural.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10412%7Cmyosin.for.30668-32164.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.30668-32164.Ar_EST_120301b_c10412%7Cmyosin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9051%7Cpoly.for.36033-37417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36033-37417.Ar_EST_120301b_c9051%7Cpoly.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19738%7Cpoly.for.35801-37206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.35801-37206.Ar_EST_120301b_c19738%7Cpoly.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17368%7C5348_b09_d18z_077.for.36714-37988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.36714-37988.Ar_EST_120301b_c17368%7C5348_b09_d18z_077.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17502%7Csperm.for.44875-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.44875-46147.Ar_EST_120301b_c17502%7Csperm.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.for.46523-47950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.46523-47950.Ar_EST_120301b_c10104%7Cnbero1ch_t3_003_f01_28apr2006_005.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15477%7C010511olea005840ht.for.47761-48883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.47761-48883.Ar_EST_120301b_c15477%7C010511olea005840ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12496%7Cmitotic.for.48559-49821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.48559-49821.Ar_EST_120301b_c12496%7Cmitotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig631%7Cabc.for.49870-51710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49870-51710.120301b_Contig631%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig362%7Cabc.for.50804-52767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50804-52767.120301b_Contig362%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig591%7Cactin.for.52012-54049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52012-54049.120301b_Contig591%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19773%7Cactin.for.52309-53610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52309-53610.Ar_EST_120301b_c19773%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14966%7Cras-related.for.58383-59584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58383-59584.Ar_EST_120301b_rep_c14966%7Cras-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14539%7Chydra.for.65120-66122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.65120-66122.Ar_EST_120301b_c14539%7Chydra.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13213%7Cintron-binding.for.68211-69663.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68211-69663.Ar_EST_120301b_c13213%7Cintron-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2756%7Csen1p.for.68632-69999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.68632-69999.Ar_EST_120301b_c2756%7Csen1p.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10437%7Cintron-binding.for.69298-70670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.69298-70670.Ar_EST_120301b_c10437%7Cintron-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15450%7Cintron-binding.for.70035-71377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.70035-71377.Ar_EST_120301b_c15450%7Cintron-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1912%7Cpatatin.for.71801-73209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.71801-73209.Ar_EST_120301b_c1912%7Cpatatin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10248%7Cfp871808.for.72440-73995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.72440-73995.Ar_EST_120301b_c10248%7Cfp871808.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11840%7Cmembrane.for.73620-75243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.73620-75243.Ar_EST_120301b_c11840%7Cmembrane.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14999%7Cpredicted.for.81251-82657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81251-82657.Ar_EST_120301b_c14999%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8376%7Cperoxisomal.for.82450-83986.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82450-83986.Ar_EST_120301b_c8376%7Cperoxisomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19284%7Cagencourt_61881600.for.82251-83486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82251-83486.Ar_EST_120301b_c19284%7Cagencourt_61881600.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15193%7Cabc.for.84208-85171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84208-85171.Ar_EST_120301b_c15193%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14003%7Cabc.for.85483-86603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.85483-86603.Ar_EST_120301b_c14003%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16443%7Caplysia.for.87251-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.87251-88282.Ar_EST_120301b_c16443%7Caplysia.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:44 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:40 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:44 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:53 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:60 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:58 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/BF/60/AR_HYBRID_130113_TINTIN_EF2ON_C15//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C15/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:36 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.for.9415-10717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.9415-10717.gi%7C284093316%7Cgb%7CEFC46954%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.for.10193-12362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.10193-12362.gi%7C284091441%7Cgb%7CEFC45088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.11672-13489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.11672-13489.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.for.17102-18870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.17102-18870.gi%7C284088481%7Cgb%7CEFC42144%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.for.25758-27251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25758-27251.gi%7C284084487%7Cgb%7CEFC38179%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.for.25761-27182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27182.gi%7C284090397%7Cgb%7CEFC44049%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.for.25761-27230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.25761-27230.gi%7C284083009%7Cgb%7CEFC36717%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.for.28469-30195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.28469-30195.gi%7C284092236%7Cgb%7CEFC45879%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.for.29853-30916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.29853-30916.gi%7C284096677%7Cgb%7CEFC50304%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.for.34890-37451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.34890-37451.gi%7C284091339%7Cgb%7CEFC44986%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.for.49909-52718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.49909-52718.gi%7C284089040%7Cgb%7CEFC42700%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.for.50258-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50258-52748.gi%7C284082540%7Cgb%7CEFC36256%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.for.50602-52748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.50602-52748.gi%7C284089317%7Cgb%7CEFC42975%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.52748-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52748-54057.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.52271-54060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52271-54060.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.52328-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52328-54057.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.52325-53676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52325-53676.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.52331-53442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53442.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.52334-54063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54063.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.52331-53367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-53367.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.52556-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52556-54066.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.52334-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52334-54057.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.52331-54066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52331-54066.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.52721-54057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.52721-54057.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.58454-59577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.58454-59577.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.61526-64275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64275.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.61526-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64254.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.for.61514-64407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64407.gi%7C284089082%7Cgb%7CEFC42742%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.61526-64446.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64446.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082474%7Cgb%7CEFC36192%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.for.61481-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61481-64428.gi%7C284082092%7Cgb%7CEFC35872%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.for.61526-64410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64410.gi%7C284085337%7Cgb%7CEFC39022%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.for.61487-64431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61487-64431.gi%7C284083266%7Cgb%7CEFC36971%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.61526-64284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64284.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.61514-64422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61514-64422.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.for.61592-64470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61592-64470.gi%7C284082440%7Cgb%7CEFC36159%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284081028%7Cgb%7CEFC35268%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284093921%7Cgb%7CEFC47557%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.for.61526-64428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64428.gi%7C284082136%7Cgb%7CEFC35906%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.61526-64467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61526-64467.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.61640-64254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.61640-64254.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.for.81597-82880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.81597-82880.gi%7C284096409%7Cgb%7CEFC50037%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.for.82936-84050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.82936-84050.gi%7C284082808%7Cgb%7CEFC36519%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.for.83354-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83354-88282.gi%7C284089213%7Cgb%7CEFC42872%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.84602-86190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84602-86190.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.84545-86139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84545-86139.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.for.83441-88282.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.83441-88282.gi%7C284088030%7Cgb%7CEFC41696%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.84614-86178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86178.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.for.84695-86136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84695-86136.gi%7C284094672%7Cgb%7CEFC48305%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.84614-86181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C15.84614-86181.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 27
...processing 1 of 27
...processing 2 of 27
...processing 3 of 27
...processing 4 of 27
...processing 5 of 27
...processing 6 of 27
...processing 7 of 27
...processing 8 of 27
...processing 9 of 27
...processing 10 of 27
...processing 11 of 27
...processing 12 of 27
...processing 13 of 27
...processing 14 of 27
...processing 15 of 27
...processing 16 of 27
...processing 17 of 27
...processing 18 of 27
...processing 19 of 27
...processing 20 of 27
...processing 21 of 27
...processing 22 of 27
...processing 23 of 27
...processing 24 of 27
...processing 25 of 27
...processing 26 of 27
total clusters:12 now processing 0
...processing 0 of 11
...processing 1 of 11
...processing 2 of 11
...processing 3 of 11
...processing 4 of 11
...processing 5 of 11
...processing 6 of 11
...processing 7 of 11
...processing 8 of 11
...processing 9 of 11
...processing 10 of 11
total clusters:12 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 26
...processing 1 of 26
...processing 2 of 26
...processing 3 of 26
...processing 4 of 26
...processing 5 of 26
...processing 6 of 26
...processing 7 of 26
...processing 8 of 26
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...processing 10 of 26
...processing 11 of 26
...processing 12 of 26
...processing 13 of 26
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...processing 15 of 26
...processing 16 of 26
...processing 17 of 26
...processing 18 of 26
...processing 19 of 26
...processing 20 of 26
...processing 21 of 26
...processing 22 of 26
...processing 23 of 26
...processing 24 of 26
...processing 25 of 26
total clusters:12 now processing 0
...processing 0 of 20
...processing 1 of 20
...processing 2 of 20
...processing 3 of 20
...processing 4 of 20
...processing 5 of 20
...processing 6 of 20
...processing 7 of 20
...processing 8 of 20
...processing 9 of 20
...processing 10 of 20
...processing 11 of 20
...processing 12 of 20
...processing 13 of 20
...processing 14 of 20
...processing 15 of 20
...processing 16 of 20
...processing 17 of 20
...processing 18 of 20
...processing 19 of 20
...trimming the rest
total clusters:12 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:19 now processing 0
total clusters:19 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:19 now processing 0
total clusters:19 now processing 0
total clusters:19 now processing 0
total clusters:19 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:19 now processing 0
total clusters:19 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:19 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:19 now processing 0
total clusters:19 now processing 0
total clusters:19 now processing 0
total clusters:19 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:19 now processing 0
total clusters:19 now processing 0
total clusters:19 now processing 0
total clusters:19 now processing 0
total clusters:19 now processing 0
total clusters:19 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
...processing 0 of 2
...processing 1 of 2
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:17 now processing 0
...processing 0 of 20
...processing 1 of 20
...processing 2 of 20
...processing 3 of 20
...processing 4 of 20
...processing 5 of 20
...processing 6 of 20
...processing 7 of 20
...processing 8 of 20
...processing 9 of 20
...processing 10 of 20
...processing 11 of 20
...processing 12 of 20
...processing 13 of 20
...processing 14 of 20
...processing 15 of 20
...processing 16 of 20
...processing 17 of 20
...processing 18 of 20
...processing 19 of 20
...trimming the rest
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.65-927.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10392-12162.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.16295-17282.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.18776-19638.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24658-27202.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.27597-30020.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.35089-37251.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45074-45947.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46722-47750.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48758-49621.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.50069-52569.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.58572-59384.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.72000-75043.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.81796-83836.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.9547-10562.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.11871-13289.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.17554-18622.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.20331-23124.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29831-31964.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.36913-37788.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.47960-48712.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52211-53875.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.61680-64294.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.68410-71177.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.81450-82457.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.83553-88154.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C16
Length: 52806
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C16.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:2 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig74%7Cras.for.4626-7621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.4626-7621.120301b_Contig74%7Cras.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16859%7Cras.for.2491-3652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2491-3652.Ar_EST_120301b_c16859%7Cras.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1186%7Csecreted.for.2145-4070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2145-4070.120301b_Contig1186%7Csecreted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20200%7Cg.for.5582-6832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.5582-6832.Ar_EST_120301b_rep_c20200%7Cg.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7704%7C40s.for.2996-5442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.2996-5442.Ar_EST_120301b_c7704%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14467%7Ccu605174.for.8339-9523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8339-9523.Ar_EST_120301b_rep_c14467%7Ccu605174.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.for.8342-9199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.8342-9199.Ar_EST_120301b_rep_c7171%7Cly_yit_dp1235.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16260%7Cmethyltransferase.for.11915-13043.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.11915-13043.Ar_EST_120301b_c16260%7Cmethyltransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c612%7C3.for.13756-15898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.13756-15898.Ar_EST_120301b_c612%7C3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14163%7Cheterotrimeric.for.14536-15940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14536-15940.Ar_EST_120301b_c14163%7Cheterotrimeric.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1012%7Cras-related.for.16093-17594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16093-17594.120301b_Contig1012%7Cras-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9994%7CFP067752.for.20020-21546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.20020-21546.Ar_EST_120301b_c9994%7CFP067752.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19755%7C---NA---.for.19886-21213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.19886-21213.Ar_EST_120301b_c19755%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1652%7Cpredicted.for.22962-24406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.22962-24406.Ar_EST_120301b_c1652%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12976%7Cdym_chick.for.24127-25530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.24127-25530.Ar_EST_120301b_c12976%7Cdym_chick.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4302%7Cnad-dependent.for.27610-29630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27610-29630.Ar_EST_120301b_rep_c4302%7Cnad-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4959%7Cnad-dependent.for.27638-29648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27638-29648.Ar_EST_120301b_rep_c4959%7Cnad-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13941%7Cnucleotide.for.28457-29556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.28457-29556.Ar_EST_120301b_rep_c13941%7Cnucleotide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14530%7Chypothetical.for.29417-30831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.29417-30831.Ar_EST_120301b_c14530%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1221%7Cgateway.for.31131-32485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31131-32485.Ar_EST_120301b_c1221%7Cgateway.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2400%7Ctransmembrane.for.31863-33502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.31863-33502.Ar_EST_120301b_c2400%7Ctransmembrane.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16743%7Catp.for.36527-37979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.36527-37979.Ar_EST_120301b_c16743%7Catp.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3646%7Cisoform.for.35541-37378.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.35541-37378.Ar_EST_120301b_c3646%7Cisoform.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16709%7C---NA---.for.38655-40235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38655-40235.Ar_EST_120301b_c16709%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10548%7Cpopulus.for.38111-39685.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.38111-39685.Ar_EST_120301b_c10548%7Cpopulus.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12154%7Ctransposase.for.41740-43156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.41740-43156.Ar_EST_120301b_c12154%7Ctransposase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.for.44089-45039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.44089-45039.Ar_EST_120301b_c13040%7Ccnsn01-f-004961-501.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13845%7C---NA---.for.49598-50912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.49598-50912.Ar_EST_120301b_c13845%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13073%7Cccashart06b08r.for.50532-51611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.50532-51611.Ar_EST_120301b_c13073%7Cccashart06b08r.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13711%7C1108770679036.for.51968-52806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.51968-52806.Ar_EST_120301b_c13711%7C1108770679036.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:6 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:12 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:5 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:7 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:6 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:6 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:9 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:6 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:11 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/28/97/AR_HYBRID_130113_TINTIN_EF2ON_C16//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C16/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:6 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.for.6355-7489.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.6355-7489.gi%7C284081967%7Cgb%7CEFC35778%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.for.14639-16114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14639-16114.gi%7C284084915%7Cgb%7CEFC38603%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.14705-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16123.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.14678-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14678-16123.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.14693-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16123.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.14738-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14738-16123.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.14705-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-15853.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.14732-16123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14732-16123.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.14798-15723.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14798-15723.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.14705-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14705-16105.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.14693-16105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.14693-16105.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.for.16083-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16083-17862.gi%7C284084832%7Cgb%7CEFC38521%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.for.16077-17862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.16077-17862.gi%7C284096643%7Cgb%7CEFC50270%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.for.17195-19077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.17195-19077.gi%7C284097000%7Cgb%7CEFC50627%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.for.25157-28242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.25157-28242.gi%7C284095112%7Cgb%7CEFC48744%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.for.27629-29588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C16.27629-29588.gi%7C284091376%7Cgb%7CEFC45023%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:5 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:5 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:5 now processing 0
total clusters:5 now processing 0
total clusters:5 now processing 0
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:4 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:4 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:4 now processing 0
total clusters:4 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:10 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:10 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:10 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.8491-9323.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.20085-21013.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23073-25330.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.29616-32285.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.35740-37784.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.38304-40035.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.52167-52806.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.2344-7421.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.14735-15923.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16276-18877.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.25356-29430.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.32062-33302.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.41939-42958.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.44288-44861.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.49797-50712.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C17
Length: 92022
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:6 current j:0
j_size:6 current j:1
j_size:6 current j:2
j_size:6 current j:3
j_size:6 current j:4
j_size:6 current j:5
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C17.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:0 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14841%7C---NA---.for.1416-2440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1416-2440.Ar_EST_120301b_c14841%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.for.2068-3358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2068-3358.Ar_EST_120301b_c12481%7Cpt11-c2-300-003-e01-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c152%7Cdisulfide.for.1875-3275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.1875-3275.Ar_EST_120301b_c152%7Cdisulfide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12224%7Cproteasome-associated.for.2749-4281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.2749-4281.Ar_EST_120301b_c12224%7Cproteasome-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3338%7Cproteasome-associated.for.3465-5694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.3465-5694.Ar_EST_120301b_c3338%7Cproteasome-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16010%7Cproteasome-associated.for.5217-6552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5217-6552.Ar_EST_120301b_c16010%7Cproteasome-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14875.for.5785-6871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.5785-6871.Ar_EST_120301b_c14875.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18129%7Cheat.for.7223-8542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.7223-8542.Ar_EST_120301b_c18129%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15944%7C603773189f1.for.10823-11971.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.10823-11971.Ar_EST_120301b_c15944%7C603773189f1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11028%7Cauxin.for.11347-13098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.11347-13098.Ar_EST_120301b_c11028%7Cauxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3067%7Crna-binding.for.12713-14508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.12713-14508.Ar_EST_120301b_c3067%7Crna-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15013%7Cnacnu32to.for.16800-18175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16800-18175.Ar_EST_120301b_c15013%7Cnacnu32to.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3173%7Cconserved.for.16013-17915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.16013-17915.Ar_EST_120301b_c3173%7Cconserved.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8941%7Cmrna-decapping.for.21273-22620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21273-22620.Ar_EST_120301b_c8941%7Cmrna-decapping.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8091%7Cgram.for.25540-27155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.25540-27155.Ar_EST_120301b_c8091%7Cgram.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9708%7Cprotein.for.26626-28000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26626-28000.Ar_EST_120301b_c9708%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2949%7Cprotein.for.27412-29105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27412-29105.Ar_EST_120301b_c2949%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17989%7Cgolgin.for.31210-32198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31210-32198.Ar_EST_120301b_c17989%7Cgolgin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16259%7Cpolyadenylate-binding.for.30808-32056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.30808-32056.Ar_EST_120301b_c16259%7Cpolyadenylate-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2387%7Cacyl-.for.31890-33234.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.31890-33234.Ar_EST_120301b_c2387%7Cacyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13344%7Ctranscription.for.33215-34470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33215-34470.Ar_EST_120301b_rep_c13344%7Ctranscription.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4140%7Ctranscription.for.33145-34529.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33145-34529.Ar_EST_120301b_rep_c4140%7Ctranscription.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18913%7Ctranscription.for.33177-34321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33177-34321.Ar_EST_120301b_rep_c18913%7Ctranscription.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8510%7Ctranscription.for.33317-34420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33317-34420.Ar_EST_120301b_rep_c8510%7Ctranscription.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15808%7Cnascent.for.33280-34495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.33280-34495.Ar_EST_120301b_rep_c15808%7Cnascent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9214%7Ccoiled-coil.for.39058-40408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39058-40408.Ar_EST_120301b_c9214%7Ccoiled-coil.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19600%7Ccoiled-coil.for.38864-40377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.38864-40377.Ar_EST_120301b_c19600%7Ccoiled-coil.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18901%7Cdna.for.39766-41076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.39766-41076.Ar_EST_120301b_c18901%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3719%7Cddb1-.for.40713-42856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40713-42856.Ar_EST_120301b_c3719%7Cddb1-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18822%7Cauf_.for.43214-44648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43214-44648.Ar_EST_120301b_c18822%7Cauf_.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8190%7Ctilapia.for.43181-44516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.43181-44516.Ar_EST_120301b_c8190%7Ctilapia.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13048%7Ccbs.for.45243-46586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45243-46586.Ar_EST_120301b_c13048%7Ccbs.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3085%7Cprotein.for.44775-46572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44775-46572.Ar_EST_120301b_c3085%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19474%7Ccbs.for.45854-47315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.45854-47315.Ar_EST_120301b_c19474%7Ccbs.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3208%7Cdihydrolipoamide.for.46625-48544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46625-48544.Ar_EST_120301b_c3208%7Cdihydrolipoamide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1995%7Cperoxidase-like.for.52915-54181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.52915-54181.Ar_EST_120301b_c1995%7Cperoxidase-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16093%7Csmall.for.53639-54991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.53639-54991.Ar_EST_120301b_c16093%7Csmall.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10212%7Ccv03-normalized.for.57094-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.57094-58040.Ar_EST_120301b_c10212%7Ccv03-normalized.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11832%7Ctranscriptional.for.59175-60514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.59175-60514.Ar_EST_120301b_c11832%7Ctranscriptional.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9386%7Caldehyde.for.60398-61477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60398-61477.Ar_EST_120301b_rep_c9386%7Caldehyde.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.for.60397-61481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.60397-61481.Ar_EST_120301b_rep_c5837%7Cubiquitin-ribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10610%7Carsenical.for.67383-68847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67383-68847.Ar_EST_120301b_c10610%7Carsenical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14571%7Cgrowth.for.81450-82610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.81450-82610.Ar_EST_120301b_c14571%7Cgrowth.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8106%7Cglycosyl.for.87454-89144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.87454-89144.Ar_EST_120301b_c8106%7Cglycosyl.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:25 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:22 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:19 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:22 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:34 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:23 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:29 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:28 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:30 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/2E/92/AR_HYBRID_130113_TINTIN_EF2ON_C17//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C17/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:26 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.for.21443-22914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21443-22914.gi%7C284096446%7Cgb%7CEFC50074%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.for.21428-22911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.21428-22911.gi%7C284088239%7Cgb%7CEFC41904%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.for.26581-27899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.26581-27899.gi%7C284088728%7Cgb%7CEFC42390%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.for.27297-29125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.27297-29125.gi%7C284093986%7Cgb%7CEFC47622%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.for.40629-42867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.40629-42867.gi%7C284083389%7Cgb%7CEFC37093%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.for.42233-43607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.42233-43607.gi%7C284088661%7Cgb%7CEFC42323%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284084450%7Cgb%7CEFC38143%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.for.44718-47219.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.44718-47219.gi%7C284087263%7Cgb%7CEFC40934%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.for.46566-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46566-48732.gi%7C284094712%7Cgb%7CEFC48345%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C260677510%7Cgb%7CACX47992%2E1%7C.for.46575-48732.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.46575-48732.gi%7C260677510%7Cgb%7CACX47992%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.for.49226-51258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.49226-51258.gi%7C42795417%7Cgb%7CAAS46035%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.for.48980-51279.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.48980-51279.gi%7C284092604%7Cgb%7CEFC46245%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.for.54320-55659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.54320-55659.gi%7C284091110%7Cgb%7CEFC44758%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.for.61695-63855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-63855.gi%7C284087591%7Cgb%7CEFC41260%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.for.61689-64185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64185.gi%7C284090807%7Cgb%7CEFC44457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.for.61695-64170.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61695-64170.gi%7C284087960%7Cgb%7CEFC41626%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.for.61689-64167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.61689-64167.gi%7C284091709%7Cgb%7CEFC45354%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.for.67184-69094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C17.67184-69094.gi%7C284086829%7Cgb%7CEFC40503%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:10 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
total clusters:10 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:10 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
total clusters:22 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:22 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2074-3158.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.27496-28925.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.31007-31856.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33344-34338.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.39257-40208.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40828-43407.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.44917-48532.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.53095-53981.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.67383-68894.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81649-82410.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.1608-2246.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.2940-8342.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.11022-12898.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.12912-14308.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.16198-17982.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.21437-22714.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.25739-27800.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32089-33069.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.39063-40876.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.43380-44448.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.49179-51079.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.53834-54791.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57293-57840.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.59374-60314.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.61888-63967.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.87653-88944.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C18
Length: 97524
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C18.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:0 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig956%7Cist1.for.1393-3113.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.1393-3113.120301b_Contig956%7Cist1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c207%7Ccyclophilin.for.2372-3908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2372-3908.Ar_EST_120301b_c207%7Ccyclophilin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9680%7Csialate.for.2871-4336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.2871-4336.Ar_EST_120301b_c9680%7Csialate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11909%7Cpredicted.for.10205-11801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.10205-11801.Ar_EST_120301b_c11909%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17317%7Chypothetical.for.12208-13469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12208-13469.Ar_EST_120301b_c17317%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1848%7Cserine.for.13277-15049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13277-15049.Ar_EST_120301b_c1848%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12449%7Cpeptidase.for.13848-14943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13848-14943.Ar_EST_120301b_c12449%7Cpeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14570%7Cserine.for.13254-14383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.13254-14383.Ar_EST_120301b_c14570%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13149%7Csodium%3Asolute.for.14314-15606.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.14314-15606.Ar_EST_120301b_c13149%7Csodium%3Asolute.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13340%7Cjle00002651.for.17297-18594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.17297-18594.Ar_EST_120301b_c13340%7Cjle00002651.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3112%7Cprotein.for.21072-23154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21072-23154.Ar_EST_120301b_c3112%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.for.23099-25361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23099-25361.Ar_EST_120301b_rep_c4384%7Casparaginyl-trna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.for.23655-25076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23655-25076.Ar_EST_120301b_rep_c6569%7Casparaginyl-trna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19437%7Cphosphatidylserine.for.25508-26638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25508-26638.Ar_EST_120301b_c19437%7Cphosphatidylserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7907%7Cphosphatidylserine.for.25067-26654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25067-26654.Ar_EST_120301b_c7907%7Cphosphatidylserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19136%7Cphosphatidylserine.for.25501-26838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.25501-26838.Ar_EST_120301b_c19136%7Cphosphatidylserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12567%7Cbp914876.for.26854-28102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26854-28102.Ar_EST_120301b_c12567%7Cbp914876.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c474%7Crasgef.for.26750-28162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.26750-28162.Ar_EST_120301b_c474%7Crasgef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10283%7Crasgef.for.27456-29229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.27456-29229.Ar_EST_120301b_c10283%7Crasgef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1820%7Crasgef.for.28529-29887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28529-29887.Ar_EST_120301b_c1820%7Crasgef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1034%7C6-phosphogluconate.for.31048-33315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31048-33315.120301b_Contig1034%7C6-phosphogluconate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14395%7Cacrasis.for.31744-32774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31744-32774.Ar_EST_120301b_c14395%7Cacrasis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.for.31784-32819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31784-32819.Ar_EST_120301b_rep_c14855%7C6-phosphogluconate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig595%7Cprefoldin.for.32824-34284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.32824-34284.120301b_Contig595%7Cprefoldin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9174%7Cig.for.38880-40636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.38880-40636.Ar_EST_120301b_c9174%7Cig.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.for.42321-43789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.42321-43789.Ar_EST_120301b_c15067%7C6-phosphogluconolactonase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1603%7Coxidoreductase.for.43514-45581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43514-45581.Ar_EST_120301b_c1603%7Coxidoreductase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5690%7Czinc-binding.for.43646-45239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.43646-45239.Ar_EST_120301b_rep_c5690%7Czinc-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10070%7Cprotein.for.44178-45537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.44178-45537.Ar_EST_120301b_rep_c10070%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17326%7Cforkhead.for.47118-48572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.47118-48572.Ar_EST_120301b_c17326%7Cforkhead.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18313%7Csh3-domain.for.48128-49291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48128-49291.Ar_EST_120301b_c18313%7Csh3-domain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15882%7Cprotein.for.48571-49859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.48571-49859.Ar_EST_120301b_c15882%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9855%7Cunq88-.for.49262-51251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49262-51251.Ar_EST_120301b_rep_c9855%7Cunq88-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5404%7Cunq88-.for.49663-51470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.49663-51470.Ar_EST_120301b_rep_c5404%7Cunq88-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.for.51685-52680.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.51685-52680.Ar_EST_120301b_c14063%7Cvir_sct982_g01_jp7_4g1_002.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15610%7Cautophagy.for.52013-53304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.52013-53304.Ar_EST_120301b_c15610%7Cautophagy.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.for.55320-56583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.55320-56583.Ar_EST_120301b_c9411%7C%28%2B%29-neomenthol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11031%7Cdinucleoside.for.56198-57706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56198-57706.Ar_EST_120301b_c11031%7Cdinucleoside.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15310%7Cprotein.for.57832-59418.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.57832-59418.Ar_EST_120301b_c15310%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15%7Chypothetical.for.59021-60766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59021-60766.Ar_EST_120301b_c15%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11961%7Cabc.for.59276-60425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.59276-60425.Ar_EST_120301b_rep_c11961%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c342%7Ceukaryotic.for.60117-62820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60117-62820.Ar_EST_120301b_c342%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6325%7Ceukaryotic.for.60122-62377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60122-62377.Ar_EST_120301b_rep_c6325%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14038%7Ceukaryotic.for.60334-61979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.60334-61979.Ar_EST_120301b_rep_c14038%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10838%7Cpredicted.for.63235-64205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63235-64205.Ar_EST_120301b_c10838%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15959%7Cnon-transporter.for.63573-64952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.63573-64952.Ar_EST_120301b_c15959%7Cnon-transporter.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1121%7Cnitrate.for.65272-66840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65272-66840.Ar_EST_120301b_c1121%7Cnitrate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10306%7Cnitrate.for.64797-66084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.64797-66084.Ar_EST_120301b_c10306%7Cnitrate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7785%7Cnitrate.for.66081-68119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.66081-68119.Ar_EST_120301b_c7785%7Cnitrate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16968%7Cguanylate.for.70042-71135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70042-71135.Ar_EST_120301b_c16968%7Cguanylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3296%7Ctranscription.for.72211-73510.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72211-73510.Ar_EST_120301b_c3296%7Ctranscription.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12094%7Cpredicted.for.72879-74208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.72879-74208.Ar_EST_120301b_c12094%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16226%7Cprotein.for.73862-75151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73862-75151.Ar_EST_120301b_c16226%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3632%7Creceptor-interacting.for.74428-76656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.74428-76656.Ar_EST_120301b_c3632%7Creceptor-interacting.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4371%7Ctata-binding.for.79865-81399.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79865-81399.Ar_EST_120301b_rep_c4371%7Ctata-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1339%7Cupf0577.for.81265-84505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.81265-84505.120301b_Contig1339%7Cupf0577.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13539%7C---NA---.for.89697-91031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.89697-91031.Ar_EST_120301b_c13539%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18466%7Cchaetosphaeridium.for.90173-91792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.90173-91792.Ar_EST_120301b_c18466%7Cchaetosphaeridium.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17951%7Cclp.for.91022-92635.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.91022-92635.Ar_EST_120301b_c17951%7Cclp.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19464%7Cbf-sam-tir-like.for.96236-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96236-97524.Ar_EST_120301b_c19464%7Cbf-sam-tir-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1663%7Csterile.for.96052-97524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.96052-97524.Ar_EST_120301b_c1663%7Csterile.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:16 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:10 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:22 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:12 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:17 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:17 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:22 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:20 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:14 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/19/8F/AR_HYBRID_130113_TINTIN_EF2ON_C18//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C18/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:14 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.for.8997-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8997-10627.gi%7C284095252%7Cgb%7CEFC48883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.8937-10627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8937-10627.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.8949-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8949-10624.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.for.9150-10633.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.9150-10633.gi%7C284086622%7Cgb%7CEFC40297%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.for.8919-10624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.8919-10624.gi%7C284090173%7Cgb%7CEFC43826%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.for.12954-15104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.12954-15104.gi%7C284094933%7Cgb%7CEFC48565%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.for.21395-23692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21395-23692.gi%7C284090440%7Cgb%7CEFC44092%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095286%7Cgb%7CEFC48917%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.for.21485-23695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.21485-23695.gi%7C284095446%7Cgb%7CEFC49077%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.for.23192-25461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.23192-25461.gi%7C284092248%7Cgb%7CEFC45891%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.for.28190-30464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28190-30464.gi%7C284092767%7Cgb%7CEFC46408%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089590%7Cgb%7CEFC43247%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.for.28208-30458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.28208-30458.gi%7C284089589%7Cgb%7CEFC43246%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.for.31080-33301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31080-33301.gi%7C284095088%7Cgb%7CEFC48720%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.for.31116-33244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.31116-33244.gi%7C18644664%7Cgb%7CAAL76318%2E1%7CAF394508_1.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.for.33923-35247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.33923-35247.gi%7C284092926%7Cgb%7CEFC46566%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.for.45120-46202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.45120-46202.gi%7C284084413%7Cgb%7CEFC38106%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.for.56356-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.56356-57467.gi%7C284093891%7Cgb%7CEFC47527%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.for.62297-65300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.62297-65300.gi%7C284090358%7Cgb%7CEFC44010%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.65494-66551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.65494-66551.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.for.70054-71453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.70054-71453.gi%7C284095485%7Cgb%7CEFC49116%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.for.73767-75085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.73767-75085.gi%7C284084029%7Cgb%7CEFC37726%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.for.75286-76406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.75286-76406.gi%7C284090329%7Cgb%7CEFC43981%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.79969-81246.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.79969-81246.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.for.93315-94324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C18.93315-94324.gi%7C284091548%7Cgb%7CEFC45194%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1592-2913.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.9118-10433.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.12407-14904.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.17496-18394.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.21271-25261.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25266-26638.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26949-29687.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.31279-34084.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.34122-35047.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.39079-40436.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.42520-43589.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.45319-46002.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.47317-51270.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.58005-59218.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.59220-60582.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73060-74951.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.81464-84305.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.3070-4136.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.10404-11601.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.14508-15406.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.43713-45381.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.52212-53104.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.55519-56383.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.56397-57506.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.60316-67919.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.70101-71253.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.74627-76479.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.80064-81199.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89896-91592.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93514-94124.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96251-97449.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C19
Length: 217569
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:2 current j:0
j_size:2 current j:1
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C19.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:13 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:17 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:8 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:20 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:10 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:19 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:15 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:11 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:15 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:19 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18086%7Cpredicted.for.1806-3007.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.1806-3007.Ar_EST_120301b_c18086%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.for.4726-5785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.4726-5785.Ar_EST_120301b_c17569%7Cme1-0071p-a159-f12-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14143%7Cpredicted.for.5350-6841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.5350-6841.Ar_EST_120301b_c14143%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8188%7Chuntingtin.for.6217-7987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.6217-7987.Ar_EST_120301b_c8188%7Chuntingtin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.for.7708-8784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.7708-8784.Ar_EST_120301b_rep_c7996%7Cglyceraldehyde-3-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5073%7Cpra1.for.8169-9759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8169-9759.Ar_EST_120301b_rep_c5073%7Cpra1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5868%7Cpra1.for.8338-9754.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.8338-9754.Ar_EST_120301b_rep_c5868%7Cpra1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c971%7Cprotein.for.10089-11433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.10089-11433.Ar_EST_120301b_c971%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17756%7Cdna.for.14180-15515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.14180-15515.Ar_EST_120301b_c17756%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6314%7Cbi146m05.for.20010-21370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20010-21370.Ar_EST_120301b_rep_c6314%7Cbi146m05.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18921%7C---NA---.for.20166-21202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20166-21202.Ar_EST_120301b_rep_c18921%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19041%7C---NA---.for.20072-21110.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20072-21110.Ar_EST_120301b_rep_c19041%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1735%7Cdna.for.19510-21674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19510-21674.Ar_EST_120301b_c1735%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13965%7Ctryptophan.for.20308-21500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.20308-21500.Ar_EST_120301b_rep_c13965%7Ctryptophan.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4463%7C---NA---.for.21337-22786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.21337-22786.Ar_EST_120301b_rep_c4463%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11964%7Chistone.for.26141-27552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26141-27552.Ar_EST_120301b_c11964%7Chistone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14853%7Cpredicted.for.25824-26912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25824-26912.Ar_EST_120301b_c14853%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c725%7Cprotein.for.25790-27759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25790-27759.Ar_EST_120301b_c725%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14261%7C---NA---.for.27658-28561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.27658-28561.Ar_EST_120301b_c14261%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11200%7Cperoxisome.for.28574-30060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28574-30060.Ar_EST_120301b_c11200%7Cperoxisome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16384%7C---NA---.for.28150-29386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.28150-29386.Ar_EST_120301b_c16384%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16810%7Cperoxisomal.for.29540-30925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29540-30925.Ar_EST_120301b_c16810%7Cperoxisomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.for.30724-31913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30724-31913.Ar_EST_120301b_c1284%7Cshwachman-bodian-diamond.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2405%7Crna-associated.for.30286-31904.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30286-31904.Ar_EST_120301b_c2405%7Crna-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.for.30411-31683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30411-31683.Ar_EST_120301b_rep_c7523%7Cshwachman-bodian-diamond.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c858%7Csuccinate-.for.35387-37427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35387-37427.Ar_EST_120301b_c858%7Csuccinate-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14975%7Cgc-rich.for.36799-38057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.36799-38057.Ar_EST_120301b_c14975%7Cgc-rich.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17619%7Cgc-rich.for.37259-38400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37259-38400.Ar_EST_120301b_c17619%7Cgc-rich.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11908%7Cwd40.for.37236-38338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.37236-38338.Ar_EST_120301b_c11908%7Cwd40.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9665%7Ctyrosyl-trna.for.40531-41818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.40531-41818.Ar_EST_120301b_c9665%7Ctyrosyl-trna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15790%7Cadenylyltransferase.for.41871-43101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41871-43101.Ar_EST_120301b_c15790%7Cadenylyltransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18381%7C2-methylisocitrate.for.43546-44773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43546-44773.Ar_EST_120301b_c18381%7C2-methylisocitrate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1141%7Cmethylisocitrate.for.43547-45200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43547-45200.Ar_EST_120301b_c1141%7Cmethylisocitrate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5326%7Ccazn.for.46335-47659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.46335-47659.Ar_EST_120301b_rep_c5326%7Ccazn.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.for.48455-49896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.48455-49896.Ar_EST_120301b_c16278%7Chh_ystg_54f02_t3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3313%7Cdc896819.for.47270-49327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.47270-49327.Ar_EST_120301b_c3313%7Cdc896819.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15481%7Cnadh-dependent.for.55949-56970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55949-56970.Ar_EST_120301b_c15481%7Cnadh-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6369%7Ccathepsin.for.56950-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.56950-58951.Ar_EST_120301b_rep_c6369%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6703%7Ccathepsin.for.57416-58951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57416-58951.Ar_EST_120301b_rep_c6703%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5635%7Ccathepsin.for.57081-58956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57081-58956.Ar_EST_120301b_rep_c5635%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15567%7Ccathepsin.for.57591-58542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57591-58542.Ar_EST_120301b_rep_c15567%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18626%7Cschistosoma.for.57553-58871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57553-58871.Ar_EST_120301b_rep_c18626%7Cschistosoma.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4114%7Ccathepsin.for.57073-58967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57073-58967.Ar_EST_120301b_rep_c4114%7Ccathepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12361%7Cdna.for.58245-59385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58245-59385.Ar_EST_120301b_c12361%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11199%7Centh.for.58624-60297.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.58624-60297.Ar_EST_120301b_c11199%7Centh.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2376%7Cregulator.for.60776-62236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60776-62236.Ar_EST_120301b_c2376%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c291%7Cregulator.for.60402-63026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.60402-63026.Ar_EST_120301b_c291%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.for.68959-70300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.68959-70300.Ar_EST_120301b_c14264%7Cdpo07-eadult-whole-untreated-unnorm.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1316%7Cpeptide.for.70993-72991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70993-72991.Ar_EST_120301b_c1316%7Cpeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8577%7Cpeptide.for.70981-72404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.70981-72404.Ar_EST_120301b_c8577%7Cpeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.for.74276-75452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.74276-75452.Ar_EST_120301b_rep_c14052%7Cadenosylhomocysteinase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.for.73633-75728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73633-75728.Ar_EST_120301b_rep_c4278%7Cdihydrolipoamide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12796%7Csestrin-like.for.75023-76366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75023-76366.Ar_EST_120301b_c12796%7Csestrin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14013%7Cenvelope.for.75631-76655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75631-76655.Ar_EST_120301b_c14013%7Cenvelope.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c294%7Csestrin-like.for.75776-77286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75776-77286.Ar_EST_120301b_c294%7Csestrin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10956%7C---NA---.for.77886-79247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.77886-79247.Ar_EST_120301b_c10956%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11463%7Chypothetical.for.80337-81687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.80337-81687.Ar_EST_120301b_c11463%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9893%7Cpq-loop.for.81376-82839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81376-82839.Ar_EST_120301b_c9893%7Cpq-loop.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16844%7Chypothetical.for.93623-95050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.93623-95050.Ar_EST_120301b_c16844%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6574%7Cprotein.for.94548-96085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94548-96085.Ar_EST_120301b_rep_c6574%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12988%7Cmembrane.for.96666-97923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96666-97923.Ar_EST_120301b_c12988%7Cmembrane.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1227%7Clysophospholipid.for.96104-98415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96104-98415.Ar_EST_120301b_c1227%7Clysophospholipid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15198%7Ct-complex.for.96435-97629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.96435-97629.Ar_EST_120301b_rep_c15198%7Ct-complex.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c821%7Csco.for.98203-99525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.98203-99525.Ar_EST_120301b_c821%7Csco.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16830%7C---NA---.for.101216-102554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.101216-102554.Ar_EST_120301b_c16830%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c765%7Cstart.for.100984-102358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.100984-102358.Ar_EST_120301b_c765%7Cstart.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1011%7Cactin.for.102913-104263.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102913-104263.120301b_Contig1011%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7459%7Cubiquitin.for.102549-103922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102549-103922.Ar_EST_120301b_rep_c7459%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7281%7Cactin.for.102559-103719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102559-103719.Ar_EST_120301b_rep_c7281%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19974%7Cbeta.for.102516-103491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-103491.Ar_EST_120301b_rep_c19974%7Cbeta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16282%7Cfq664523.for.102847-103750.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102847-103750.Ar_EST_120301b_c16282%7Cfq664523.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig782%7Cactin.for.102545-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104472.120301b_Contig782%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4045%7Cactin.for.102541-103983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-103983.Ar_EST_120301b_rep_c4045%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10438%7Cactin.for.103088-104291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103088-104291.Ar_EST_120301b_c10438%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7317%7Cbeta.for.102533-103683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102533-103683.Ar_EST_120301b_rep_c7317%7Cbeta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6795%7Cbeta.for.102544-103668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103668.Ar_EST_120301b_rep_c6795%7Cbeta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig573%7Cactin.for.102881-104288.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102881-104288.120301b_Contig573%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5842%7Cactin.for.102638-104158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102638-104158.Ar_EST_120301b_rep_c5842%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1143%7Cactin.for.102554-103861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-103861.120301b_Contig1143%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7283%7Cbeta-actin.for.102622-103856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102622-103856.Ar_EST_120301b_rep_c7283%7Cbeta-actin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20286%7Cactin.for.103194-104293.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103194-104293.Ar_EST_120301b_rep_c20286%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6785%7Cactin.for.103351-104481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103351-104481.Ar_EST_120301b_rep_c6785%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8932%7Cactin.for.102900-104033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102900-104033.Ar_EST_120301b_c8932%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6177%7Cactin.for.102541-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102541-104472.Ar_EST_120301b_rep_c6177%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1364%7Cactin.for.103165-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103165-104442.120301b_Contig1364%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10740%7Cactin.for.102897-104034.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102897-104034.Ar_EST_120301b_rep_c10740%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7052%7Cactin.for.102980-104144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102980-104144.Ar_EST_120301b_rep_c7052%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16711%7Cactin-like.for.103455-104490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103455-104490.Ar_EST_120301b_rep_c16711%7Cactin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5397%7Cbeta.for.102544-103526.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-103526.Ar_EST_120301b_rep_c5397%7Cbeta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4024%7Cactin.for.102516-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102516-104514.Ar_EST_120301b_rep_c4024%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6690%7Cactin.for.103188-104366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103188-104366.Ar_EST_120301b_rep_c6690%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7250%7Cbeta-actin.for.102623-103775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102623-103775.Ar_EST_120301b_rep_c7250%7Cbeta-actin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7417%7Cactin.for.102573-103644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102573-103644.Ar_EST_120301b_rep_c7417%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4576%7Cactin.for.102713-104514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102713-104514.Ar_EST_120301b_rep_c4576%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6565%7Cactin.for.103281-104486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103281-104486.Ar_EST_120301b_rep_c6565%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11279%7Cactin.for.103111-104199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103111-104199.Ar_EST_120301b_c11279%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1814%7Cactin.for.102544-104002.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102544-104002.Ar_EST_120301b_c1814%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7237%7Cubiquitin.for.102545-103765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103765.Ar_EST_120301b_rep_c7237%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6092%7Cbeta.for.102545-103710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103710.Ar_EST_120301b_rep_c6092%7Cbeta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20475%7Cbeta.for.102545-103679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103679.Ar_EST_120301b_rep_c20475%7Cbeta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6612%7Cbeta-actin.for.102769-103850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102769-103850.Ar_EST_120301b_rep_c6612%7Cbeta-actin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4013%7Cactin.for.102545-104438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104438.Ar_EST_120301b_rep_c4013%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7649%7Cactin.for.102933-104177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102933-104177.Ar_EST_120301b_rep_c7649%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5328%7Cactin.for.102896-103925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102896-103925.Ar_EST_120301b_rep_c5328%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig519%7Cactin.for.102671-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102671-104472.120301b_Contig519%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7261%7Cactin.for.102569-103763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102569-103763.Ar_EST_120301b_rep_c7261%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7574%7Cactin.for.102927-104188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102927-104188.Ar_EST_120301b_rep_c7574%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14154%7Cactin.for.103272-104375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103272-104375.Ar_EST_120301b_rep_c14154%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16255%7Cactin.for.103218-104391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103218-104391.Ar_EST_120301b_rep_c16255%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20026%7Cactin.for.103107-104141.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103107-104141.Ar_EST_120301b_c20026%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5899%7Cactin.for.102883-103950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102883-103950.Ar_EST_120301b_rep_c5899%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5955%7Cbeta-actin.for.103505-104472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103505-104472.Ar_EST_120301b_rep_c5955%7Cbeta-actin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7229%7CActin.for.102557-103487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-103487.Ar_EST_120301b_rep_c7229%7CActin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6804%7Cprotein.for.105841-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105841-107575.Ar_EST_120301b_rep_c6804%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15007%7Czinc.for.108314-109528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.108314-109528.Ar_EST_120301b_c15007%7Czinc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.for.109246-110294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.109246-110294.Ar_EST_120301b_c13370%7Cau_cv_est_008a_b02.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8594%7C---NA---.for.111592-113431.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.111592-113431.Ar_EST_120301b_c8594%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16528%7C---NA---.for.113739-114926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.113739-114926.Ar_EST_120301b_c16528%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8764%7Cpseudouridine.for.127906-129892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.127906-129892.Ar_EST_120301b_c8764%7Cpseudouridine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11591%7Chistone.for.129444-130461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129444-130461.Ar_EST_120301b_rep_c11591%7Chistone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2442%7Chistone.for.129143-130465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129143-130465.Ar_EST_120301b_c2442%7Chistone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11107%7Ckynureninase.for.132897-134505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132897-134505.Ar_EST_120301b_c11107%7Ckynureninase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1312%7Ckynureninase.for.133454-134779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.133454-134779.Ar_EST_120301b_c1312%7Ckynureninase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18501%7Cepoxide.for.138372-139795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.138372-139795.Ar_EST_120301b_c18501%7Cepoxide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6221%7Cvon.for.139858-141383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139858-141383.Ar_EST_120301b_rep_c6221%7Cvon.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6322%7Cvon.for.139293-140703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139293-140703.Ar_EST_120301b_rep_c6322%7Cvon.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.for.139281-141395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139281-141395.Ar_EST_120301b_rep_c5569%7Cinter-alpha-trypsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.for.140881-142708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140881-142708.Ar_EST_120301b_rep_c6355%7Cgdp-l-fucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.for.141007-142074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141007-142074.Ar_EST_120301b_rep_c19416%7Cgdp-l-fucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.for.141132-142705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141132-142705.Ar_EST_120301b_rep_c4330%7Cgdp-l-fucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.for.141386-142656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141386-142656.Ar_EST_120301b_rep_c15292%7Cgdp-l-fucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8424%7Ctissue.for.140951-142356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140951-142356.Ar_EST_120301b_rep_c8424%7Ctissue.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.for.141224-142130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.141224-142130.Ar_EST_120301b_rep_c12996%7Cgdp-l-fucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14212%7Caminoglycoside.for.142125-143497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.142125-143497.Ar_EST_120301b_c14212%7Caminoglycoside.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17261%7Cthermophilic.for.143186-144667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.143186-144667.Ar_EST_120301b_c17261%7Cthermophilic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16136%7Cprobable.for.144243-145472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144243-145472.Ar_EST_120301b_c16136%7Cprobable.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9764%7Cregulator.for.151181-152872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151181-152872.Ar_EST_120301b_rep_c9764%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7187%7Cregulator.for.151327-153118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.151327-153118.Ar_EST_120301b_rep_c7187%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c999%7Creplication.for.161477-162850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161477-162850.Ar_EST_120301b_c999%7Creplication.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1128%7Csoluble.for.164149-165867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164149-165867.120301b_Contig1128%7Csoluble.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8629%7Cgq028.for.166297-167880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.166297-167880.Ar_EST_120301b_c8629%7Cgq028.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6086%7C60s.for.167832-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167832-169064.Ar_EST_120301b_rep_c6086%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig123%7C60s.for.167786-169266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167786-169266.120301b_Contig123%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18572%7Cribosomal.for.168035-169064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168035-169064.Ar_EST_120301b_rep_c18572%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6911%7Credoxin.for.167155-168586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167155-168586.Ar_EST_120301b_rep_c6911%7Credoxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20338%7C60s.for.167804-168909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167804-168909.Ar_EST_120301b_rep_c20338%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20172%7C60s.for.167803-169031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167803-169031.Ar_EST_120301b_rep_c20172%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11878%7C---NA---.for.168799-169695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168799-169695.Ar_EST_120301b_c11878%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c592%7Cglutathione-dependent.for.172691-174063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.172691-174063.Ar_EST_120301b_c592%7Cglutathione-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15602%7Cwd-40.for.174212-175463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.174212-175463.Ar_EST_120301b_c15602%7Cwd-40.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5247%7Ccawy.for.175255-177616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175255-177616.Ar_EST_120301b_rep_c5247%7Ccawy.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19643%7Cmetc577tf.for.175646-176943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175646-176943.Ar_EST_120301b_rep_c19643%7Cmetc577tf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5668%7Cbeta-propeller.for.175225-177450.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175225-177450.Ar_EST_120301b_rep_c5668%7Cbeta-propeller.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10167%7Chypothetical.for.175909-177339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.175909-177339.Ar_EST_120301b_rep_c10167%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18312%7Cpuncp79tv.for.177167-178457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.177167-178457.Ar_EST_120301b_c18312%7Cpuncp79tv.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3490%7Ccytochrome.for.178105-180411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.178105-180411.Ar_EST_120301b_c3490%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig438%7Csilent.for.180034-181671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180034-181671.120301b_Contig438%7Csilent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13291%7Cmagnesium.for.181514-182950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.181514-182950.Ar_EST_120301b_c13291%7Cmagnesium.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14685%7Ccfbx.for.182149-183291.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.182149-183291.Ar_EST_120301b_c14685%7Ccfbx.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6756%7Ccharged.for.184404-186003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184404-186003.Ar_EST_120301b_rep_c6756%7Ccharged.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19315%7Csperm.for.184412-185594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184412-185594.Ar_EST_120301b_rep_c19315%7Csperm.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8432%7Cprotein.for.186019-187330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.186019-187330.Ar_EST_120301b_c8432%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9026%7Cadenylate.for.191652-193243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.191652-193243.Ar_EST_120301b_c9026%7Cadenylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig232%7Cprotein.for.195299-197003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.195299-197003.120301b_Contig232%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12355%7Cachain.for.198160-199841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.198160-199841.Ar_EST_120301b_c12355%7Cachain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11421%7Ccbpn%3A.for.199372-200960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.199372-200960.Ar_EST_120301b_c11421%7Ccbpn%3A.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12326%7Cplasmid.for.201299-202617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.201299-202617.Ar_EST_120301b_c12326%7Cplasmid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9661%7Cd-lactate.for.202113-203560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202113-203560.Ar_EST_120301b_c9661%7Cd-lactate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.for.202849-204171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202849-204171.Ar_EST_120301b_c12252%7Cd-2-hydroxyglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig82%7Cprofilin.for.205645-207160.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205645-207160.120301b_Contig82%7Cprofilin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19204%7Ctachyzoite.for.206003-207254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.206003-207254.Ar_EST_120301b_c19204%7Ctachyzoite.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18472%7C0298140.for.214230-215255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.214230-215255.Ar_EST_120301b_c18472%7C0298140.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 20
...processing 1 of 20
...processing 2 of 20
...processing 3 of 20
...processing 4 of 20
...processing 5 of 20
...processing 6 of 20
...processing 7 of 20
...processing 8 of 20
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...processing 12 of 20
...processing 13 of 20
...processing 14 of 20
...processing 15 of 20
...processing 16 of 20
...processing 17 of 20
...processing 18 of 20
...processing 19 of 20
...trimming the rest
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:78 now processing 0
total clusters:78 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
total clusters:78 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:108 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:95 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:92 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:111 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:103 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:97 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:95 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:105 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:98 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/41/33/AR_HYBRID_130113_TINTIN_EF2ON_C19//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C19/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:90 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.12704-14707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.12704-14707.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.for.11917-15472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.11917-15472.gi%7C284091570%7Cgb%7CEFC45216%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.15448-16409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.15448-16409.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.for.17077-18694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.17077-18694.gi%7C284094467%7Cgb%7CEFC48101%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.for.19098-20221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.19098-20221.gi%7C284084713%7Cgb%7CEFC38403%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.for.18813-20302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.18813-20302.gi%7C284083098%7Cgb%7CEFC36805%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.for.25893-27843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.25893-27843.gi%7C284089888%7Cgb%7CEFC43543%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.for.26241-27855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.26241-27855.gi%7C284089773%7Cgb%7CEFC43428%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.for.29329-30989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29329-30989.gi%7C284097150%7Cgb%7CEFC50777%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.for.29371-30977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29371-30977.gi%7C284092355%7Cgb%7CEFC45997%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.for.29368-30926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.29368-30926.gi%7C284096259%7Cgb%7CEFC49887%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.for.30300-31853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.30300-31853.gi%7C284089294%7Cgb%7CEFC42952%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.for.31243-32294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.31243-32294.gi%7C284096906%7Cgb%7CEFC50533%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.32408-33930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32408-33930.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.32417-33987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33987.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.32417-33759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33759.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.32417-33741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33741.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.32417-33459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.32417-33459.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.for.35392-37509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35392-37509.gi%7C284092998%7Cgb%7CEFC46638%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.for.35398-37130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35398-37130.gi%7C284082062%7Cgb%7CEFC35848%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.for.35461-37506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.35461-37506.gi%7C284087626%7Cgb%7CEFC41294%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.for.41200-43226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.41200-43226.gi%7C284089694%7Cgb%7CEFC43350%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.for.43509-45184.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.43509-45184.gi%7C284089398%7Cgb%7CEFC43056%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.for.49328-51487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.49328-51487.gi%7C284094642%7Cgb%7CEFC48275%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.for.50946-52528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.50946-52528.gi%7C284083741%7Cgb%7CEFC37441%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.for.53473-54613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.53473-54613.gi%7C284089583%7Cgb%7CEFC43240%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.for.54305-55518.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.54305-55518.gi%7C284095256%7Cgb%7CEFC48887%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.55682-57063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.55682-57063.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.57083-58569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57083-58569.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.57107-58131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57107-58131.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.57110-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57110-58599.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.57122-58599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58599.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.57119-58602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57119-58602.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.for.57122-58626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.57122-58626.gi%7C284086017%7Cgb%7CEFC39696%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.for.66552-68221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.66552-68221.gi%7C284092312%7Cgb%7CEFC45955%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.for.73646-75543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.73646-75543.gi%7C284095663%7Cgb%7CEFC49293%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.for.75047-77273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.75047-77273.gi%7C284089244%7Cgb%7CEFC42903%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.for.81456-82906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.81456-82906.gi%7C284088914%7Cgb%7CEFC42574%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.87474-88462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87474-88462.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.for.87465-88486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87465-88486.gi%7C284088639%7Cgb%7CEFC42301%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.87405-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87405-88381.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.87462-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87462-88381.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.for.87438-88381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.87438-88381.gi%7C284087769%7Cgb%7CEFC41436%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.for.94523-95901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.94523-95901.gi%7C284095431%7Cgb%7CEFC49062%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.for.97862-99309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.97862-99309.gi%7C284087201%7Cgb%7CEFC40872%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.for.102590-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102590-104469.gi%7C284088832%7Cgb%7CEFC42493%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284089566%7Cgb%7CEFC43223%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.for.102545-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104466.gi%7C284091175%7Cgb%7CEFC44823%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284086467%7Cgb%7CEFC40143%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284091949%7Cgb%7CEFC45593%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284093022%7Cgb%7CEFC46662%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084913%7Cgb%7CEFC38601%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284091907%7Cgb%7CEFC45551%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.for.102545-103866.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-103866.gi%7C284081216%7Cgb%7CEFC35341%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284094255%7Cgb%7CEFC47890%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284085698%7Cgb%7CEFC39380%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284085910%7Cgb%7CEFC39590%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.for.102560-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104466.gi%7C284085859%7Cgb%7CEFC39540%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.for.102539-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102539-104469.gi%7C284082408%7Cgb%7CEFC36130%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284084215%7Cgb%7CEFC37910%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284082818%7Cgb%7CEFC36529%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092206%7Cgb%7CEFC45849%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284084133%7Cgb%7CEFC37829%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284093050%7Cgb%7CEFC46689%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284081499%7Cgb%7CEFC35479%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284083870%7Cgb%7CEFC37569%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.for.102563-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104469.gi%7C284090106%7Cgb%7CEFC43759%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.for.102563-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104442.gi%7C284092467%7Cgb%7CEFC46109%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.for.103178-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103178-104463.gi%7C284081169%7Cgb%7CEFC35319%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.for.102899-104112.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104112.gi%7C284081941%7Cgb%7CEFC35759%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C7140539%7Cgb%7CAAF37002%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C41016928%7Csp%7CQ9NJV4%2E1%7CACT1_NAEGR.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.for.102551-104346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104346.gi%7C284091080%7Cgb%7CEFC44728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081758%7Cgb%7CEFC35638%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.for.102530-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102530-104469.gi%7C284090316%7Cgb%7CEFC43968%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.for.102566-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104469.gi%7C284087026%7Cgb%7CEFC40698%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.for.102557-104451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104451.gi%7C284085061%7Cgb%7CEFC38748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.for.102560-104460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104460.gi%7C284084193%7Cgb%7CEFC37888%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091169%7Cgb%7CEFC44817%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284089912%7Cgb%7CEFC43567%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284096128%7Cgb%7CEFC49757%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284089027%7Cgb%7CEFC42687%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.for.102557-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102557-104463.gi%7C284095858%7Cgb%7CEFC49487%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.for.102566-104382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102566-104382.gi%7C284094965%7Cgb%7CEFC48597%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.for.102938-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102938-104469.gi%7C284089319%7Cgb%7CEFC42977%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.for.103238-104466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.103238-104466.gi%7C284094182%7Cgb%7CEFC47817%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284092093%7Cgb%7CEFC45736%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.for.102899-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102899-104469.gi%7C284081879%7Cgb%7CEFC35716%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284096899%7Cgb%7CEFC50526%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284089740%7Cgb%7CEFC43396%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.for.102560-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104442.gi%7C284089378%7Cgb%7CEFC43036%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.for.102545-104442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104442.gi%7C284092856%7Cgb%7CEFC46496%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.for.102563-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102563-104463.gi%7C284094994%7Cgb%7CEFC48626%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284087839%7Cgb%7CEFC41506%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284083654%7Cgb%7CEFC37355%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284096006%7Cgb%7CEFC49635%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284085784%7Cgb%7CEFC39465%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.for.102545-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104463.gi%7C284094441%7Cgb%7CEFC48075%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284093507%7Cgb%7CEFC47145%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.for.102542-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-104469.gi%7C284091207%7Cgb%7CEFC44855%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.for.102554-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102554-104469.gi%7C284090413%7Cgb%7CEFC44065%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.for.102545-104073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104073.gi%7C284093025%7Cgb%7CEFC46665%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.for.102560-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102560-104469.gi%7C284090925%7Cgb%7CEFC44574%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.for.102674-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102674-104469.gi%7C284096977%7Cgb%7CEFC50604%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.for.102551-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104469.gi%7C284086629%7Cgb%7CEFC40304%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.for.102545-104469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102545-104469.gi%7C284095925%7Cgb%7CEFC49554%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.for.102542-103899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102542-103899.gi%7C284084108%7Cgb%7CEFC37804%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.for.102551-104463.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.102551-104463.gi%7C284097217%7Cgb%7CEFC50844%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.for.105921-107575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105921-107575.gi%7C284087564%7Cgb%7CEFC41233%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.for.105939-107563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105939-107563.gi%7C284083763%7Cgb%7CEFC37463%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.for.105870-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105870-107503.gi%7C284087027%7Cgb%7CEFC40699%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.for.105897-107503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105897-107503.gi%7C284093481%7Cgb%7CEFC47119%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.for.105918-107479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105918-107479.gi%7C284087852%7Cgb%7CEFC41519%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.for.105891-107584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107584.gi%7C284083950%7Cgb%7CEFC37648%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.for.105891-107422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105891-107422.gi%7C284084476%7Cgb%7CEFC38168%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.for.105876-107506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.105876-107506.gi%7C284088746%7Cgb%7CEFC42408%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.for.124756-128537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.124756-128537.gi%7C284095404%7Cgb%7CEFC49035%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.for.129157-130455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.129157-130455.gi%7C284090058%7Cgb%7CEFC43712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.for.132784-134747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.132784-134747.gi%7C284095332%7Cgb%7CEFC48963%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.for.139882-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139882-141374.gi%7C284093977%7Cgb%7CEFC47613%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.for.139876-141374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.139876-141374.gi%7C284088986%7Cgb%7CEFC42646%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084480%7Cgb%7CEFC38172%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.for.140935-142691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.140935-142691.gi%7C284084385%7Cgb%7CEFC38078%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.for.144298-145361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.144298-145361.gi%7C284093250%7Cgb%7CEFC46889%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.154523-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154523-157683.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.154520-157728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154520-157728.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.154493-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154493-157671.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.154550-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157671.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.154784-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154784-157671.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.154781-157494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154781-157494.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.154544-158337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154544-158337.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.154526-157821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157821.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.154514-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154514-157683.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.154550-157683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157683.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.for.154526-157671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157671.gi%7C284087408%7Cgb%7CEFC41078%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.for.154550-157707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154550-157707.gi%7C284084506%7Cgb%7CEFC38198%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.154526-157677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154526-157677.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.154940-157443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154940-157443.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.for.154628-157437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154628-157437.gi%7C284091599%7Cgb%7CEFC45245%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.154991-157653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.154991-157653.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.for.161178-163191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.161178-163191.gi%7C284097262%7Cgb%7CEFC50889%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.for.164142-165611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164142-165611.gi%7C284096748%7Cgb%7CEFC50375%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.for.164151-165614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.164151-165614.gi%7C284095896%7Cgb%7CEFC49525%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.for.167331-168490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.167331-168490.gi%7C284094517%7Cgb%7CEFC48151%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.for.168021-169063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.168021-169063.gi%7C284090204%7Cgb%7CEFC43857%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.for.180033-181667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.180033-181667.gi%7C284085110%7Cgb%7CEFC38796%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.for.184670-185961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185961.gi%7C284089126%7Cgb%7CEFC42785%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.for.184670-185745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.184670-185745.gi%7C284085008%7Cgb%7CEFC38695%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.for.187068-188147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.187068-188147.gi%7C284084707%7Cgb%7CEFC38397%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.for.188067-192365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.188067-192365.gi%7C284089061%7Cgb%7CEFC42721%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.for.197096-200432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.197096-200432.gi%7C284089121%7Cgb%7CEFC42780%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.for.202027-204158.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.202027-204158.gi%7C284089246%7Cgb%7CEFC42905%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.for.205605-208688.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.205605-208688.gi%7C284094815%7Cgb%7CEFC48448%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.for.209039-216557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C19.209039-216557.gi%7C284086419%7Cgb%7CEFC40096%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:43 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:43 now processing 0
total clusters:43 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:43 now processing 0
total clusters:43 now processing 0
...processing 0 of 64
...processing 1 of 64
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...processing 63 of 64
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:43 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:43 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
...processing 0 of 4
...processing 1 of 4
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...processing 3 of 4
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
total clusters:43 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 62
...processing 1 of 62
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...processing 4 of 62
...processing 5 of 62
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...processing 61 of 62
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
...processing 0 of 21
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...processing 15 of 21
...processing 16 of 21
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...processing 18 of 21
...processing 19 of 21
...processing 20 of 21
...trimming the rest
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 4
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...processing 3 of 4
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 18
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...processing 19 of 20
...trimming the rest
...processing 0 of 13
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...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
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...processing 12 of 13
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
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...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
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...processing 18 of 20
...processing 19 of 20
...trimming the rest
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
...processing 0 of 2
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total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
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...processing 2 of 3
...processing 0 of 4
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...processing 3 of 4
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
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...processing 0 of 6
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...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 4
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...processing 2 of 4
...processing 3 of 4
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
total clusters:42 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:42 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2005-2807.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5530-7787.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10288-11233.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12116-15315.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.19006-20102.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21536-22595.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.25950-27655.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.27857-31715.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.35586-37309.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.40730-41618.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43708-45000.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.49527-52473.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.53672-54413.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.54492-55318.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.55881-56863.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.57280-60097.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.66697-68021.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.69158-70100.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.78085-79067.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.80532-81487.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.93822-94850.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.101415-102357.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.102627-104449.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.108513-109328.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.111791-113231.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.113930-114726.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.124943-129695.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.132983-134579.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.138571-139595.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.141080-142508.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.143385-144467.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.154722-157471.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.164341-165667.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.167354-168389.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.168992-169495.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.174395-175263.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.178304-180211.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.180232-181471.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.184599-185803.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.188266-192165.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.209238-216357.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.8368-9559.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.15647-16209.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.19709-21488.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.31442-32094.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.32607-33730.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.36998-38200.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.41399-43026.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.46534-49127.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.60601-62837.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.71180-72791.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.73817-77145.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.81575-82706.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.94722-95805.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.96303-98215.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.98398-99325.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.102756-103291.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.103462-104351.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.106037-107477.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.109445-110094.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.129342-130265.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.139478-141218.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.142324-143297.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.144390-145272.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.151376-152918.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.161368-163003.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.166496-167680.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.168050-168863.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.172890-173863.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.175424-178257.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.181713-183091.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/71_0.186218-187151.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/72_0.187267-187947.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/73_0.191838-193043.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/74_0.195498-196803.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/75_0.197295-200760.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/76_0.201498-203971.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/77_0.205804-208491.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C20
Length: 38198
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:45 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:39 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:32 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:47 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:32 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:53 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:33 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:46 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:43 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:43 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:6 current j:0
j_size:6 current j:1
j_size:6 current j:2
j_size:6 current j:3
j_size:6 current j:4
j_size:6 current j:5
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C20.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:2 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18583%7Cnpad-.for.1604-3053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1604-3053.Ar_EST_120301b_rep_c18583%7Cnpad-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7720%7Ccfw16-.for.1383-2872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1383-2872.Ar_EST_120301b_rep_c7720%7Ccfw16-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19891%7Cxotch.for.707-2213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.707-2213.Ar_EST_120301b_c19891%7Cxotch.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11264%7Cfr663913.for.1286-2855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1286-2855.Ar_EST_120301b_rep_c11264%7Cfr663913.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18557%7Chypothetical.for.708-2095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.708-2095.Ar_EST_120301b_c18557%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19899%7Cccfh.for.1605-3040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1605-3040.Ar_EST_120301b_rep_c19899%7Cccfh.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19932%7Cccfh.for.1559-2870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1559-2870.Ar_EST_120301b_rep_c19932%7Cccfh.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10247%7Cccza.for.1600-2933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.1600-2933.Ar_EST_120301b_rep_c10247%7Cccza.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20330%7Chypothetical.for.837-1940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.837-1940.Ar_EST_120301b_rep_c20330%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12661%7C---NA---.for.5097-6432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.5097-6432.Ar_EST_120301b_c12661%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17581%7Cdnaj.for.12404-13615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.12404-13615.Ar_EST_120301b_c17581%7Cdnaj.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2840%7C---NA---.for.13023-14330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.13023-14330.Ar_EST_120301b_c2840%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9108%7Caj495322.for.14219-15252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.14219-15252.Ar_EST_120301b_c9108%7Caj495322.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12145%7Cfq013894.for.21499-22670.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.21499-22670.Ar_EST_120301b_c12145%7Cfq013894.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.22605-23506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.22605-23506.Ar_EST_120301b_c10994%7Cct751907.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17786%7Ckr3b.for.29517-30923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.29517-30923.Ar_EST_120301b_c17786%7Ckr3b.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10857%7C---NA---.for.30343-31585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.30343-31585.Ar_EST_120301b_c10857%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15255%7Cresponse.for.37377-38198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37377-38198.Ar_EST_120301b_c15255%7Cresponse.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13487%7Cseed.for.37227-38178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.37227-38178.Ar_EST_120301b_c13487%7Cseed.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:9 now processing 0
total clusters:9 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:6 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:7 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:3 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:7 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:7 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:4 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:4 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:7 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:6 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/1F/51/AR_HYBRID_130113_TINTIN_EF2ON_C20//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C20/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:8 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.for.8240-10218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.8240-10218.gi%7C284091150%7Cgb%7CEFC44798%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.for.9487-12538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C20.9487-12538.gi%7C284088477%7Cgb%7CEFC42140%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
cleaning clusters....
total clusters:2 now processing 0
total clusters:2 now processing 0
cleaning clusters....
total clusters:1 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:6 now processing 0
total clusters:6 now processing 0
total clusters:6 now processing 0
total clusters:6 now processing 0
total clusters:6 now processing 0
total clusters:6 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:5 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:5 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:5 now processing 0
total clusters:5 now processing 0
total clusters:5 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1494-2766.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8439-10018.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13222-14130.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21660-22549.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.29658-30723.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.867-2865.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.5296-6232.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.9686-12338.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.37550-38198.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C21
Length: 24727
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C21.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:1 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5800%7Cprotein.for.2340-4098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2340-4098.Ar_EST_120301b_rep_c5800%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4503%7Cpredicted.for.6316-7743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6316-7743.Ar_EST_120301b_rep_c4503%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17043%7Ccpad-.for.6339-7461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.6339-7461.Ar_EST_120301b_rep_c17043%7Ccpad-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17466%7C---NA---.for.7916-8809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7916-8809.Ar_EST_120301b_c17466%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14567%7Cvacuolar.for.9221-10207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9221-10207.Ar_EST_120301b_c14567%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3574%7Cankyrin.for.9580-11322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.9580-11322.Ar_EST_120301b_c3574%7Cankyrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10050%7Cunnamed.for.11732-13128.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11732-13128.Ar_EST_120301b_c10050%7Cunnamed.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16424%7Canolis.for.11685-13057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11685-13057.Ar_EST_120301b_c16424%7Canolis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20139%7Cproteasome.for.13952-15118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13952-15118.Ar_EST_120301b_rep_c20139%7Cproteasome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13540%7Cproteasome.for.14127-15285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14127-15285.Ar_EST_120301b_rep_c13540%7Cproteasome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17751%7Cproteasome.for.14041-15068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.14041-15068.Ar_EST_120301b_rep_c17751%7Cproteasome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4249%7Cprotein.for.13843-15445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13843-15445.Ar_EST_120301b_rep_c4249%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5673%7Cprotein.for.13889-15485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13889-15485.Ar_EST_120301b_rep_c5673%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18370%7Cgadus.for.17163-18491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.17163-18491.Ar_EST_120301b_c18370%7Cgadus.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19634%7Cvirulent.for.19726-21273.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19726-21273.Ar_EST_120301b_c19634%7Cvirulent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8853%7Ccopper.for.19140-21075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.19140-21075.Ar_EST_120301b_c8853%7Ccopper.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1070%7Cdiguanylate.for.21034-22812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.21034-22812.120301b_Contig1070%7Cdiguanylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1904%7Cprotein.for.22134-23516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.22134-23516.Ar_EST_120301b_c1904%7Cprotein.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:4 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:3 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:4 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:2 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:7 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/E2/0B/AR_HYBRID_130113_TINTIN_EF2ON_C21//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C21/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:1 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.for.2381-4068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.2381-4068.gi%7C284095582%7Cgb%7CEFC49212%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.for.7742-9864.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.7742-9864.gi%7C284094662%7Cgb%7CEFC48295%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.for.11338-12284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.11338-12284.gi%7C284084498%7Cgb%7CEFC38190%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.for.13885-15347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C21.13885-15347.gi%7C284092281%7Cgb%7CEFC45924%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
total clusters:3 now processing 0
total clusters:3 now processing 0
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
total clusters:3 now processing 0
total clusters:3 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:5 now processing 0
total clusters:5 now processing 0
total clusters:5 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:5 now processing 0
total clusters:5 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2539-3898.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7941-11126.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19260-20889.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21233-23332.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.6512-7543.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.11878-12928.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.14042-15285.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.17362-18291.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C22
Length: 180468
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C22.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:1 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.1-833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.1-833.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8111%7Ccbwo.for.3047-4827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.3047-4827.Ar_EST_120301b_c8111%7Ccbwo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15281%7Cche.for.4950-6277.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.4950-6277.Ar_EST_120301b_c15281%7Cche.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13217%7C020709ofm1010015ht.for.10660-11968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.10660-11968.Ar_EST_120301b_c13217%7C020709ofm1010015ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17472%7Cfgp.for.14234-15465.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14234-15465.Ar_EST_120301b_c17472%7Cfgp.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2415%7Cdomain-containing.for.14389-16400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.14389-16400.Ar_EST_120301b_c2415%7Cdomain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2973%7Crho.for.15426-17284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15426-17284.Ar_EST_120301b_c2973%7Crho.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3263%7Cnuphar.for.15935-17294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.15935-17294.Ar_EST_120301b_c3263%7Cnuphar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1203%7Cthioredoxin.for.19166-20557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.19166-20557.Ar_EST_120301b_c1203%7Cthioredoxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11684%7Ccopper.for.20132-21528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.20132-21528.Ar_EST_120301b_c11684%7Ccopper.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16190%7C---NA---.for.23672-24979.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.23672-24979.Ar_EST_120301b_c16190%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17194%7Cpredicted.for.26296-27953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.26296-27953.Ar_EST_120301b_c17194%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1297%7Csolute.for.29407-30960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29407-30960.Ar_EST_120301b_c1297%7Csolute.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10700%7Csolute.for.30213-31391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30213-31391.Ar_EST_120301b_c10700%7Csolute.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12857%7Cprotein.for.30758-31969.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30758-31969.Ar_EST_120301b_c12857%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18582%7Cprotein.for.30757-32943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30757-32943.Ar_EST_120301b_c18582%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4666%7Crho.for.32331-34513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32331-34513.Ar_EST_120301b_rep_c4666%7Crho.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6449%7Cdomain-containing.for.32564-34314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.32564-34314.Ar_EST_120301b_rep_c6449%7Cdomain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.for.33988-35641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.33988-35641.Ar_EST_120301b_rep_c4579%7C1-acyl-sn-glycerol-3-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3473%7Cprotein.for.35861-38720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.35861-38720.Ar_EST_120301b_c3473%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11453%7Couter.for.38483-39907.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.38483-39907.Ar_EST_120301b_c11453%7Couter.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12870%7Couter.for.39201-40965.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.39201-40965.Ar_EST_120301b_c12870%7Couter.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10342%7C---NA---.for.40424-42250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.40424-42250.Ar_EST_120301b_c10342%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14468%7Cprotein.for.43627-44751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.43627-44751.Ar_EST_120301b_c14468%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12413%7Crp.for.49689-51198.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.49689-51198.Ar_EST_120301b_c12413%7Crp.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16757%7Cby805517.for.51678-52789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.51678-52789.Ar_EST_120301b_c16757%7Cby805517.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13658%7Cats1.for.56100-57631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56100-57631.Ar_EST_120301b_c13658%7Cats1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15371%7Cprobable.for.55732-57167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.55732-57167.Ar_EST_120301b_c15371%7Cprobable.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19612%7Cats1.for.56807-57882.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.56807-57882.Ar_EST_120301b_c19612%7Cats1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18250%7Calpha.for.57860-59681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57860-59681.Ar_EST_120301b_c18250%7Calpha.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17288%7Cusda-fp_187010.for.59310-60593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.59310-60593.Ar_EST_120301b_c17288%7Cusda-fp_187010.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4677%7Celongation.for.62390-64153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.62390-64153.Ar_EST_120301b_rep_c4677%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2115%7Cacyl.for.64729-66060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64729-66060.Ar_EST_120301b_c2115%7Cacyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12587%7Cdolichyl-phosphate.for.65716-66849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65716-66849.Ar_EST_120301b_c12587%7Cdolichyl-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2089%7Cdolichyl-phosphate.for.65880-67602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65880-67602.Ar_EST_120301b_c2089%7Cdolichyl-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12186%7Crwp-rk.for.67114-68491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67114-68491.Ar_EST_120301b_c12186%7Crwp-rk.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.for.67816-69083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.67816-69083.Ar_EST_120301b_c15048%7Cnih_xgc_tropbrn3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig91%7Cglutamine-fructose-6-phosphate.for.68451-71176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68451-71176.120301b_Contig91%7Cglutamine-fructose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.69005-71325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69005-71325.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.for.69487-70699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.69487-70699.Ar_EST_120301b_rep_c10225%7Cglutamine-fructose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13849%7C---NA---.for.70740-72086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.70740-72086.Ar_EST_120301b_c13849%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig561%7Cpredicted.for.72048-73967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72048-73967.120301b_Contig561%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10241%7Cbtb.for.74150-75505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.74150-75505.Ar_EST_120301b_c10241%7Cbtb.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18380%7Cprotein.for.78688-79987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78688-79987.Ar_EST_120301b_c18380%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.for.82440-83981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.82440-83981.Ar_EST_120301b_c11068%7Ccaof_daphnia_pulex_log50_library_12.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig150%7Cpas.for.85931-87952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.85931-87952.120301b_Contig150%7Cpas.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15760%7C---NA---.for.87182-88494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.87182-88494.Ar_EST_120301b_c15760%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9718%7Cprotein.for.89190-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.89190-90455.Ar_EST_120301b_c9718%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11290%7Cgtpase.for.102845-104156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102845-104156.Ar_EST_120301b_c11290%7Cgtpase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13678%7Cendonuclease.for.105562-106984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.105562-106984.Ar_EST_120301b_c13678%7Cendonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2395%7Cprotein.for.108892-110254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.108892-110254.Ar_EST_120301b_c2395%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16257%7Cyeats.for.110089-111457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110089-111457.Ar_EST_120301b_c16257%7Cyeats.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16468%7Cest.for.110078-111244.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.110078-111244.Ar_EST_120301b_c16468%7Cest.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14583%7Chypothetical.for.111800-113156.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.111800-113156.Ar_EST_120301b_c14583%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19785%7Cglucan.for.114526-115915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114526-115915.Ar_EST_120301b_c19785%7Cglucan.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20171%7Cglucan.for.114230-115683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114230-115683.Ar_EST_120301b_c20171%7Cglucan.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10824%7Cglucan.for.114190-115490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.114190-115490.Ar_EST_120301b_c10824%7Cglucan.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11969%7CPREDICTED%3A.for.115347-116810.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.115347-116810.Ar_EST_120301b_c11969%7CPREDICTED%3A.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14936%7Cring.for.116229-117480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.116229-117480.Ar_EST_120301b_c14936%7Cring.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1269%7Caplysia.for.118022-119337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.118022-119337.Ar_EST_120301b_c1269%7Caplysia.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12415%7Cpredicted.for.122628-123880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122628-123880.Ar_EST_120301b_c12415%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17487%7Calpha.for.123103-124405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123103-124405.Ar_EST_120301b_c17487%7Calpha.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17006%7Cchromosome.for.123729-124995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.123729-124995.Ar_EST_120301b_c17006%7Cchromosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12054%7C020304kaka008397ht.for.124400-125756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.124400-125756.Ar_EST_120301b_c12054%7C020304kaka008397ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9314%7Csi%3Ach211-.for.125989-127607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.125989-127607.Ar_EST_120301b_c9314%7Csi%3Ach211-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11616%7Cprotein.for.127524-129056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127524-129056.Ar_EST_120301b_c11616%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15708%7Cphosphoserine.for.130824-132017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130824-132017.Ar_EST_120301b_c15708%7Cphosphoserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c261%7Cphosphoserine.for.131284-132651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131284-132651.Ar_EST_120301b_c261%7Cphosphoserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17653%7Cphosphoserine.for.131806-133058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131806-133058.Ar_EST_120301b_rep_c17653%7Cphosphoserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14091%7Cphosphoserine.for.131966-133271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.131966-133271.Ar_EST_120301b_c14091%7Cphosphoserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7121%7Cprotein.for.134097-135719.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.134097-135719.Ar_EST_120301b_rep_c7121%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig326%7Cprotein.for.132489-135331.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132489-135331.120301b_Contig326%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16289%7Csec23.for.132743-134105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132743-134105.Ar_EST_120301b_rep_c16289%7Csec23.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6736%7Caristolochia.for.139828-141206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139828-141206.Ar_EST_120301b_rep_c6736%7Caristolochia.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6315%7Cest940366.for.139857-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139857-141104.Ar_EST_120301b_rep_c6315%7Cest940366.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13068%7Cpooled.for.139871-141029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139871-141029.Ar_EST_120301b_rep_c13068%7Cpooled.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13929%7Csq2de42675.for.140270-141202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140270-141202.Ar_EST_120301b_rep_c13929%7Csq2de42675.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.for.139980-141203.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139980-141203.Ar_EST_120301b_rep_c11029%7Cimmunoglobulin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14946%7Cfy831988.for.140104-141032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140104-141032.Ar_EST_120301b_rep_c14946%7Cfy831988.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5615%7Cprotein.for.139845-141209.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139845-141209.Ar_EST_120301b_rep_c5615%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20304%7Cufl_343_70.for.139878-141104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.139878-141104.Ar_EST_120301b_rep_c20304%7Cufl_343_70.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10688%7Ccj376499.for.140485-141416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.140485-141416.Ar_EST_120301b_c10688%7Ccj376499.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3843%7Cvam6.for.141243-143315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141243-143315.Ar_EST_120301b_c3843%7Cvam6.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3148%7Cvam6.for.142318-143604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142318-143604.Ar_EST_120301b_c3148%7Cvam6.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10706%7Cvam6.for.142929-144422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.142929-144422.Ar_EST_120301b_c10706%7Cvam6.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig120%7C24-hydroxycholesterol.for.145010-146443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.145010-146443.120301b_Contig120%7C24-hydroxycholesterol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10803%7Cm-phase.for.158962-160174.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158962-160174.Ar_EST_120301b_c10803%7Cm-phase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3179%7Cm-phase.for.158622-160179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158622-160179.Ar_EST_120301b_c3179%7Cm-phase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1473%7Cprotein.for.160432-161822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160432-161822.Ar_EST_120301b_c1473%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15862%7Cu1.for.161228-162785.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.161228-162785.Ar_EST_120301b_c15862%7Cu1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1039%7Cprotein.for.162586-165745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162586-165745.Ar_EST_120301b_c1039%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12113%7Cphospholipid-transporting.for.164845-166131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.164845-166131.Ar_EST_120301b_c12113%7Cphospholipid-transporting.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1202%7Cprotein.for.165461-167255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165461-167255.Ar_EST_120301b_c1202%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig428%7Celongation.for.167131-168358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.167131-168358.120301b_Contig428%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16475%7Cspindle.for.173063-174841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.173063-174841.Ar_EST_120301b_c16475%7Cspindle.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8917%7Cmicrotubule.for.174515-176826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.174515-176826.Ar_EST_120301b_c8917%7Cmicrotubule.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2889%7Cmicrotubule.for.176603-178213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.176603-178213.Ar_EST_120301b_c2889%7Cmicrotubule.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13984%7Cubiquinone.for.178435-179738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178435-179738.Ar_EST_120301b_c13984%7Cubiquinone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16223%7Cpredicted.for.179641-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179641-180468.Ar_EST_120301b_rep_c16223%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c356%7Csenescence.for.179460-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179460-180468.Ar_EST_120301b_c356%7Csenescence.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17910%7Cvon.for.179465-180468.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.179465-180468.Ar_EST_120301b_rep_c17910%7Cvon.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:67 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:67 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:67 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
total clusters:67 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:67 now processing 0
total clusters:67 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:37 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:48 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:53 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:44 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:55 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:53 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/73/63/AR_HYBRID_130113_TINTIN_EF2ON_C22//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C22/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:32 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.for.5934-7992.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5934-7992.gi%7C284090387%7Cgb%7CEFC44039%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.for.5946-8004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.5946-8004.gi%7C284086420%7Cgb%7CEFC40097%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.for.13485-14822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.13485-14822.gi%7C284095349%7Cgb%7CEFC48980%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.for.18996-20509.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.18996-20509.gi%7C284088756%7Cgb%7CEFC42418%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.for.21370-22523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21370-22523.gi%7C284085637%7Cgb%7CEFC39319%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.for.21217-22490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.21217-22490.gi%7C284093747%7Cgb%7CEFC47384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.for.29504-31352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.29504-31352.gi%7C284090698%7Cgb%7CEFC44348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.for.30814-32875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30814-32875.gi%7C284087383%7Cgb%7CEFC41053%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.for.30865-32893.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.30865-32893.gi%7C284090239%7Cgb%7CEFC43892%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.for.57873-59706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.57873-59706.gi%7C284096950%7Cgb%7CEFC50577%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.for.60507-63139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.60507-63139.gi%7C284084213%7Cgb%7CEFC37908%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.for.64841-65805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64841-65805.gi%7C284082995%7Cgb%7CEFC36703%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.for.64728-65820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.64728-65820.gi%7C284089602%7Cgb%7CEFC43258%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.for.65960-67598.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.65960-67598.gi%7C284090820%7Cgb%7CEFC44470%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.for.68893-71309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.68893-71309.gi%7C284086979%7Cgb%7CEFC40652%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.for.72193-73918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72193-73918.gi%7C284092246%7Cgb%7CEFC45889%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.for.72208-73689.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.72208-73689.gi%7C284092608%7Cgb%7CEFC46249%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.for.77792-79425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77792-79425.gi%7C284090371%7Cgb%7CEFC44023%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.for.77795-79434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.77795-79434.gi%7C284083121%7Cgb%7CEFC36828%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.for.78695-79815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.78695-79815.gi%7C284096642%7Cgb%7CEFC50269%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.for.81422-83085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.81422-83085.gi%7C284090576%7Cgb%7CEFC44227%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.for.96533-98537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.96533-98537.gi%7C284089802%7Cgb%7CEFC43457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.102814-104145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104145.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.102823-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102823-104157.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.for.102808-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104136.gi%7C284094810%7Cgb%7CEFC48443%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.102814-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104115.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.102805-104241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104241.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.for.102802-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104127.gi%7C284088157%7Cgb%7CEFC41822%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.102814-104220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104220.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.102808-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104265.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.for.102802-104154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104154.gi%7C284087986%7Cgb%7CEFC41652%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.102793-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104148.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.for.102790-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104265.gi%7C284095711%7Cgb%7CEFC49341%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.for.102802-104148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104148.gi%7C284092198%7Cgb%7CEFC45841%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.for.102811-104103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104103.gi%7C284093945%7Cgb%7CEFC47581%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.for.102805-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102805-104136.gi%7C284096673%7Cgb%7CEFC50300%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.102802-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104265.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.for.102814-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104127.gi%7C284083677%7Cgb%7CEFC37378%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.102802-104157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104157.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.for.102811-104127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102811-104127.gi%7C284096540%7Cgb%7CEFC50168%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.102796-104265.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102796-104265.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.for.102781-104211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104211.gi%7C284087105%7Cgb%7CEFC40777%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.for.102790-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102790-104136.gi%7C284087910%7Cgb%7CEFC41577%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.for.102814-104124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104124.gi%7C284087186%7Cgb%7CEFC40857%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.102799-104136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102799-104136.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.103025-104196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.103025-104196.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.for.102802-104205.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102802-104205.gi%7C284095585%7Cgb%7CEFC49215%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.102808-104133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102808-104133.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.102793-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102793-104115.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.for.102781-104115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102781-104115.gi%7C284096356%7Cgb%7CEFC49984%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.102814-104004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.102814-104004.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.for.117066-118771.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.117066-118771.gi%7C284089169%7Cgb%7CEFC42828%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.for.122519-125055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.122519-125055.gi%7C284090561%7Cgb%7CEFC44212%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.for.127726-128828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.127726-128828.gi%7C284096574%7Cgb%7CEFC50202%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.for.130514-133218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.130514-133218.gi%7C284088808%7Cgb%7CEFC42469%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.for.132499-135658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.132499-135658.gi%7C284084220%7Cgb%7CEFC37915%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.for.138504-139857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.138504-139857.gi%7C284095359%7Cgb%7CEFC48990%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.for.141348-145005.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.141348-145005.gi%7C284091769%7Cgb%7CEFC45414%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.for.158649-159862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.158649-159862.gi%7C284085225%7Cgb%7CEFC38911%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.for.160404-162051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.160404-162051.gi%7C284081490%7Cgb%7CEFC35474%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.for.162694-166950.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162694-166950.gi%7C284092821%7Cgb%7CEFC46461%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.for.162712-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-166962.gi%7C284083022%7Cgb%7CEFC36730%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.for.162712-167013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167013.gi%7C284093552%7Cgb%7CEFC47189%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085695%7Cgb%7CEFC39377%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.for.162712-167037.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.162712-167037.gi%7C284085694%7Cgb%7CEFC39376%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.for.165317-166962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.165317-166962.gi%7C284082133%7Cgb%7CEFC35904%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.for.169433-170394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.169433-170394.gi%7C284086144%7Cgb%7CEFC39822%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.for.178423-180014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C22.178423-180014.gi%7C284090570%7Cgb%7CEFC44221%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 26
...processing 1 of 26
...processing 2 of 26
...processing 3 of 26
...processing 4 of 26
...processing 5 of 26
...processing 6 of 26
...processing 7 of 26
...processing 8 of 26
...processing 9 of 26
...processing 10 of 26
...processing 11 of 26
...processing 12 of 26
...processing 13 of 26
...processing 14 of 26
...processing 15 of 26
...processing 16 of 26
...processing 17 of 26
...processing 18 of 26
...processing 19 of 26
...processing 20 of 26
...processing 21 of 26
...processing 22 of 26
...processing 23 of 26
...processing 24 of 26
...processing 25 of 26
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 22
...processing 1 of 22
...processing 2 of 22
...processing 3 of 22
...processing 4 of 22
...processing 5 of 22
...processing 6 of 22
...processing 7 of 22
...processing 8 of 22
...processing 9 of 22
...processing 10 of 22
...processing 11 of 22
...processing 12 of 22
...processing 13 of 22
...processing 14 of 22
...processing 15 of 22
...processing 16 of 22
...processing 17 of 22
...processing 18 of 22
...processing 19 of 22
...processing 20 of 22
...processing 21 of 22
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:37 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:34 now processing 0
total clusters:34 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-851.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.3246-4627.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6133-7804.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10859-11768.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20331-21328.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.21416-22323.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.26495-27753.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.30953-32743.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.49888-57927.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.58059-59506.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.60706-62939.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.65915-71109.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.74349-75305.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.77994-79234.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.81540-82885.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.86130-88294.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.102980-104020.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.109091-110054.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.117265-118571.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.126188-127407.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.130713-133076.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.138703-139657.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.140056-140933.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.141442-144805.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.159161-159974.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.160603-162588.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.162730-167055.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.173262-178013.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.179584-180468.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.5149-6077.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.13684-17094.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.19365-20357.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.23871-24779.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.29606-31191.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32530-35441.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36060-44551.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.59509-60393.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.64927-65860.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.70926-71886.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.72298-73718.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.78887-79787.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.82639-83781.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.89389-90356.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.96732-98337.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.105759-106784.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.110288-111257.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.111999-112956.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.114389-115483.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.115546-117280.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118211-119137.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122718-125556.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.127723-128856.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.132688-135521.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.145209-146243.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.178622-179841.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C23
Length: 251560
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:35 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:53 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:38 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:63 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:51 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:49 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:39 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:41 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:43 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:50 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:7 current j:0
j_size:7 current j:1
j_size:7 current j:2
j_size:7 current j:3
j_size:7 current j:4
j_size:7 current j:5
j_size:7 current j:6
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C23.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:10 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:14 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:9 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:10 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:11 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:12 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12272%7Chypothetical.for.6337-7736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.6337-7736.Ar_EST_120301b_c12272%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18243%7Cdk907995.for.9153-10368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.9153-10368.Ar_EST_120301b_c18243%7Cdk907995.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7871%7Cdc598359.for.10778-12259.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10778-12259.Ar_EST_120301b_c7871%7Cdc598359.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.for.10913-12823.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10913-12823.Ar_EST_120301b_c875%7Cglucosamine--fructose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c273%7Cpentatricopeptide.for.11344-13207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.11344-13207.Ar_EST_120301b_c273%7Cpentatricopeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19019%7C8807_100277_12.for.10785-12317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.10785-12317.Ar_EST_120301b_c19019%7C8807_100277_12.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3513%7Cprotein.for.12916-15044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.12916-15044.Ar_EST_120301b_c3513%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11592%7C294772423.for.14264-15572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.14264-15572.Ar_EST_120301b_c11592%7C294772423.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6938%7Cpredicted.for.19566-20958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.19566-20958.Ar_EST_120301b_rep_c6938%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10805%7Cagencourt_26185347.for.30415-32475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.30415-32475.Ar_EST_120301b_c10805%7Cagencourt_26185347.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4838%7Ckeratin.for.32416-34153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32416-34153.Ar_EST_120301b_rep_c4838%7Ckeratin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6302%7Ckeratin.for.32987-34348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32987-34348.Ar_EST_120301b_rep_c6302%7Ckeratin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5667%7Ckeratin.for.32077-34405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32077-34405.Ar_EST_120301b_rep_c5667%7Ckeratin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18263%7Cpredicted.for.32928-34003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32928-34003.Ar_EST_120301b_rep_c18263%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6913%7Csmc.for.32076-33516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.32076-33516.Ar_EST_120301b_rep_c6913%7Csmc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15759%7Csplicing.for.38497-39943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38497-39943.Ar_EST_120301b_c15759%7Csplicing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1630%7Cprotein.for.39271-41325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.39271-41325.Ar_EST_120301b_c1630%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c983%7Csplicing.for.40524-41827.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40524-41827.Ar_EST_120301b_c983%7Csplicing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15568%7Cspliceosome-associated.for.40292-41528.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.40292-41528.Ar_EST_120301b_c15568%7Cspliceosome-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11774%7Csplicing.for.41071-42349.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41071-42349.Ar_EST_120301b_c11774%7Csplicing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3650%7Crsc.for.46681-50017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.46681-50017.Ar_EST_120301b_c3650%7Crsc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9332%7Cswi.for.49559-51021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.49559-51021.Ar_EST_120301b_c9332%7Cswi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11295%7Cbeach.for.50529-52094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.50529-52094.Ar_EST_120301b_c11295%7Cbeach.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10349%7Cbeach.for.51738-53143.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51738-53143.Ar_EST_120301b_c10349%7Cbeach.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18164%7Cneurobeachin-like.for.52474-53990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.52474-53990.Ar_EST_120301b_c18164%7Cneurobeachin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1782%7Cneurobeachin-like.for.54265-55844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.54265-55844.Ar_EST_120301b_c1782%7Cneurobeachin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2203%7Cbeach.for.55572-57353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.55572-57353.Ar_EST_120301b_c2203%7Cbeach.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11079%7Cprotein.for.57324-58683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57324-58683.Ar_EST_120301b_c11079%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1313%7Cvacuolar.for.57990-59334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.57990-59334.Ar_EST_120301b_c1313%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c145%7C40s.for.58792-60295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.58792-60295.Ar_EST_120301b_c145%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c936%7Chypothetical.for.59809-61596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.59809-61596.Ar_EST_120301b_c936%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15515%7Cprotein.for.60545-61895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.60545-61895.Ar_EST_120301b_c15515%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14904%7Cmetal-dependent.for.62278-63609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62278-63609.Ar_EST_120301b_c14904%7Cmetal-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10329%7Cav385603.for.63143-64309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.63143-64309.Ar_EST_120301b_c10329%7Cav385603.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19262%7Csignal.for.62864-64138.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62864-64138.Ar_EST_120301b_c19262%7Csignal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1637%7Cdna.for.66879-69168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66879-69168.Ar_EST_120301b_c1637%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14997%7Cdna.for.68365-69679.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.68365-69679.Ar_EST_120301b_c14997%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13721%7CHypothetical.for.70080-71563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70080-71563.Ar_EST_120301b_c13721%7CHypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3375%7Crelated.for.70835-72195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.70835-72195.Ar_EST_120301b_c3375%7Crelated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6563%7Cmeloidogyne.for.71999-73500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.71999-73500.Ar_EST_120301b_rep_c6563%7Cmeloidogyne.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13629%7Cpredicted.for.72275-73348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73348.Ar_EST_120301b_rep_c13629%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20446%7C40s.for.72275-73499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72275-73499.Ar_EST_120301b_rep_c20446%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10109%7Ctrc_19-.for.72002-73566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72002-73566.Ar_EST_120301b_rep_c10109%7Ctrc_19-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig430%7Cssalnwh504101.for.72000-73472.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.72000-73472.120301b_Contig430%7Cssalnwh504101.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig229%7Cnucleotide.for.73892-76171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.73892-76171.120301b_Contig229%7Cnucleotide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2043%7Cnucleotide.for.75653-76987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.75653-76987.Ar_EST_120301b_c2043%7Cnucleotide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8983%7C---NA---.for.76553-78232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.76553-78232.Ar_EST_120301b_c8983%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12405%7Cwd40.for.77496-78867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.77496-78867.Ar_EST_120301b_c12405%7Cwd40.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4427%7Cglk1_triva.for.80928-83103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80928-83103.Ar_EST_120301b_rep_c4427%7Cglk1_triva.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17133%7C---NA---.for.85095-86344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.85095-86344.Ar_EST_120301b_c17133%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7928%7Cig.for.86040-87963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.86040-87963.Ar_EST_120301b_c7928%7Cig.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12649%7Cprotein.for.87787-89098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.87787-89098.Ar_EST_120301b_c12649%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2907%7Cubiquitin.for.90189-92656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90189-92656.Ar_EST_120301b_c2907%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2207%7Cubiquitin.for.92015-93326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.92015-93326.Ar_EST_120301b_c2207%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8690%7Chypothetical.for.93831-95434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93831-95434.Ar_EST_120301b_c8690%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1542%7Chypothetical.for.93572-95544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.93572-95544.Ar_EST_120301b_c1542%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c307%7Cpotassium.for.97783-99799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.97783-99799.Ar_EST_120301b_c307%7Cpotassium.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1137%7Cpotassium.for.99027-100692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.99027-100692.120301b_Contig1137%7Cpotassium.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1107%7Crubrerythrin.for.102806-104060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102806-104060.Ar_EST_120301b_c1107%7Crubrerythrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.for.103467-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.103467-105337.Ar_EST_120301b_c9961%7Clv_hc_ra061h09f.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3345%7Cmdfw.for.104538-106152.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.104538-106152.Ar_EST_120301b_c3345%7Cmdfw.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2319%7Cl-aspartate.for.105561-107091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105561-107091.Ar_EST_120301b_c2319%7Cl-aspartate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17231%7Cl-aspartate.for.105988-107295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105988-107295.Ar_EST_120301b_c17231%7Cl-aspartate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6462%7Cheat.for.108680-110085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108680-110085.Ar_EST_120301b_rep_c6462%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9388%7Cribosomal.for.108641-109814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108641-109814.Ar_EST_120301b_rep_c9388%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5623%7Cprotein.for.108638-110171.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108638-110171.Ar_EST_120301b_rep_c5623%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.for.108910-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.108910-110082.Ar_EST_120301b_rep_c13361%7Crasgtpase-activating.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14704%7Ccbht.for.110606-111814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110606-111814.Ar_EST_120301b_c14704%7Ccbht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9096%7Cshort-chain.for.113730-115106.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.113730-115106.Ar_EST_120301b_c9096%7Cshort-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c617%7Cshort-chain.for.114369-115855.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.114369-115855.Ar_EST_120301b_c617%7Cshort-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11555%7Ccondensin.for.115828-117655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.115828-117655.Ar_EST_120301b_c11555%7Ccondensin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.for.118383-120710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118383-120710.Ar_EST_120301b_rep_c4730%7C2-oxoglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.for.119310-120836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119310-120836.Ar_EST_120301b_rep_c9087%7C2-oxoglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c377%7Coxoglutarate.for.119770-121524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.119770-121524.Ar_EST_120301b_c377%7Coxoglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig86%7Coxoglutarate.for.120319-122186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.120319-122186.120301b_Contig86%7Coxoglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9136%7C---NA---.for.121984-123442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.121984-123442.Ar_EST_120301b_c9136%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15662%7C04bax.for.123453-124718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.123453-124718.Ar_EST_120301b_c15662%7C04bax.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10569%7C---NA---.for.124646-125909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.124646-125909.Ar_EST_120301b_c10569%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9106%7Cest1049462.for.126134-128669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.126134-128669.Ar_EST_120301b_c9106%7Cest1049462.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig958%7Cwd.for.128313-130118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.128313-130118.120301b_Contig958%7Cwd.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7976%7Cvacuolar.for.129482-131502.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.129482-131502.Ar_EST_120301b_c7976%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4653%7Cloc496093.for.132642-134563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134563.Ar_EST_120301b_rep_c4653%7Cloc496093.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14445%7Cguanine.for.132861-133899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132861-133899.Ar_EST_120301b_rep_c14445%7Cguanine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7186%7Cloc496093.for.132642-134374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132642-134374.Ar_EST_120301b_rep_c7186%7Cloc496093.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13603%7Cnuclear.for.133797-134929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.133797-134929.Ar_EST_120301b_c13603%7Cnuclear.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16532%7Coxax-.for.134229-135699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.134229-135699.Ar_EST_120301b_c16532%7Coxax-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5790%7Ca.for.137376-138875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.137376-138875.Ar_EST_120301b_rep_c5790%7Ca.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig310%7Cheat.for.135898-138850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135898-138850.120301b_Contig310%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12450%7C---NA---.for.138995-140087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.138995-140087.Ar_EST_120301b_c12450%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7908%7Cdomain-containing.for.141024-142430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.141024-142430.Ar_EST_120301b_c7908%7Cdomain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7834%7Cg-protein.for.142400-144309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142400-144309.Ar_EST_120301b_c7834%7Cg-protein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19743%7Cguanine.for.143080-144247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.143080-144247.Ar_EST_120301b_c19743%7Cguanine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13715%7Cglycoprotein.for.144427-145703.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144427-145703.Ar_EST_120301b_rep_c13715%7Cglycoprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10950%7Cdna.for.146053-147455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146053-147455.Ar_EST_120301b_c10950%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14111%7Cdna.for.146865-148324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146865-148324.Ar_EST_120301b_c14111%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig531%7Cprotein.for.147650-149098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147650-149098.120301b_Contig531%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig634%7Ccr529494.for.150372-151811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150372-151811.120301b_Contig634%7Ccr529494.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7634%7Ccr529494.for.150541-151631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150541-151631.Ar_EST_120301b_rep_c7634%7Ccr529494.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7240%7Ccr529494.for.150235-151891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.150235-151891.Ar_EST_120301b_rep_c7240%7Ccr529494.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9367%7C---NA---.for.152138-153239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152138-153239.Ar_EST_120301b_c9367%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.for.153226-154544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.153226-154544.Ar_EST_120301b_c16367%7C4-hydroxyphenylpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.for.152627-154115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152627-154115.Ar_EST_120301b_c854%7C4-hydroxyphenylpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6215%7Crna.for.159799-161632.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159799-161632.Ar_EST_120301b_rep_c6215%7Crna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5579%7Crna.for.159768-161642.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159768-161642.Ar_EST_120301b_rep_c5579%7Crna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14244%7Crna.for.160284-161614.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.160284-161614.Ar_EST_120301b_rep_c14244%7Crna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10333%7Cacyl-.for.159869-161044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.159869-161044.Ar_EST_120301b_c10333%7Cacyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1371%7Crac.for.167294-169987.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167294-169987.120301b_Contig1371%7Crac.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17331%7Cnedd8.for.167035-168118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.167035-168118.Ar_EST_120301b_c17331%7Cnedd8.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10519%7Cest.for.169349-170698.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.169349-170698.Ar_EST_120301b_c10519%7Cest.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4191%7Csuccinyl-.for.170904-172812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170904-172812.Ar_EST_120301b_rep_c4191%7Csuccinyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4684%7Cmeloidogyne.for.172079-173713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172079-173713.Ar_EST_120301b_rep_c4684%7Cmeloidogyne.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15717%7Culva.for.172475-173715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.172475-173715.Ar_EST_120301b_rep_c15717%7Culva.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9614%7Ccohesin.for.182031-184093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.182031-184093.Ar_EST_120301b_c9614%7Ccohesin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17764%7C---NA---.for.183901-185011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183901-185011.Ar_EST_120301b_c17764%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1778%7Chypothetical.for.183763-185094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.183763-185094.Ar_EST_120301b_c1778%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14507%7Chypothetical.for.184948-186185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.184948-186185.Ar_EST_120301b_c14507%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9088%7Cdiguanylate.for.185779-187336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.185779-187336.Ar_EST_120301b_c9088%7Cdiguanylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1730%7Cleucine-rich.for.188767-190142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188767-190142.Ar_EST_120301b_c1730%7Cleucine-rich.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3669%7Ccentrosome-.for.189857-191499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189857-191499.Ar_EST_120301b_c3669%7Ccentrosome-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14832%7C---NA---.for.190095-191135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.190095-191135.Ar_EST_120301b_rep_c14832%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15417%7Chypothetical.for.189764-191335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189764-191335.Ar_EST_120301b_c15417%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9815%7Cpre-mrna-splicing.for.191755-193413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.191755-193413.Ar_EST_120301b_c9815%7Cpre-mrna-splicing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2402%7Calpha-l-glutamate.for.192780-194621.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192780-194621.Ar_EST_120301b_c2402%7Calpha-l-glutamate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2515%7Cfq080129.for.200643-201890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.200643-201890.Ar_EST_120301b_c2515%7Cfq080129.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16244%7Cpredicted.for.203700-205068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.203700-205068.Ar_EST_120301b_c16244%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig564%7Calg-2.for.204341-206843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204341-206843.120301b_Contig564%7Calg-2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16467%7Cfr764264.for.204297-205408.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204297-205408.Ar_EST_120301b_rep_c16467%7Cfr764264.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19160%7Crho.for.204343-205515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204343-205515.Ar_EST_120301b_rep_c19160%7Crho.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig577%7Calg-2.for.204322-207530.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204322-207530.120301b_Contig577%7Calg-2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig646%7C3-hydroxyisobutyrate.for.210928-212168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212168.120301b_Contig646%7C3-hydroxyisobutyrate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.for.210928-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210928-212620.Ar_EST_120301b_c7959%7C3-hydroxyisobutyrate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1520%7Cring.for.212862-214368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.212862-214368.Ar_EST_120301b_c1520%7Cring.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17963%7Cribonuclease.for.213718-215087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.213718-215087.Ar_EST_120301b_c17963%7Cribonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15655%7Chydroxyacylglutathione.for.217920-219067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217920-219067.Ar_EST_120301b_c15655%7Chydroxyacylglutathione.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1032%7Cbar.for.217720-219194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.217720-219194.Ar_EST_120301b_c1032%7Cbar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3714%7Cpredicted.for.219865-221920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.219865-221920.Ar_EST_120301b_c3714%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9360%7Cpectin.for.222677-223963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.222677-223963.Ar_EST_120301b_c9360%7Cpectin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14957%7C---NA---.for.223737-224678.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.223737-224678.Ar_EST_120301b_c14957%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16305%7Ccu718678.for.227564-228814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.227564-228814.Ar_EST_120301b_c16305%7Ccu718678.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15895%7Cgm-c1079.for.231109-232430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.231109-232430.Ar_EST_120301b_c15895%7Cgm-c1079.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15734%7Celectron.for.237011-238483.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.237011-238483.Ar_EST_120301b_c15734%7Celectron.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig277%7Celectron-transferring-flavoprotein.for.235927-238334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235927-238334.120301b_Contig277%7Celectron-transferring-flavoprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14121%7Csme00002039.for.238974-239931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238974-239931.Ar_EST_120301b_rep_c14121%7Csme00002039.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4568%7Chypothetical.for.238239-240574.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238239-240574.Ar_EST_120301b_rep_c4568%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7127%7Chypothetical.for.238312-239951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.238312-239951.Ar_EST_120301b_rep_c7127%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13716%7Cpossible.for.239125-240151.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239125-240151.Ar_EST_120301b_rep_c13716%7Cpossible.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13710%7C---NA---.for.239844-240691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.239844-240691.Ar_EST_120301b_c13710%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig398%7Cphage.for.240269-242260.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.240269-242260.120301b_Contig398%7Cphage.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8397%7Cprotein.for.241758-243744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241758-243744.Ar_EST_120301b_c8397%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8110%7Clongevity.for.242976-244909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.242976-244909.Ar_EST_120301b_c8110%7Clongevity.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13752%7Ctranscriptional.for.248009-249354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248009-249354.Ar_EST_120301b_rep_c13752%7Ctranscriptional.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15531%7Ctranscriptional.for.247898-249032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247898-249032.Ar_EST_120301b_c15531%7Ctranscriptional.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1651%7Ctpr.for.248173-249572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248173-249572.Ar_EST_120301b_c1651%7Ctpr.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c720%7Ctpr.for.247246-248705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247246-248705.Ar_EST_120301b_c720%7Ctpr.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11668%7Ccce.for.248728-249756.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.248728-249756.Ar_EST_120301b_c11668%7Ccce.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17777%7Cfungal.for.249599-250715.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249599-250715.Ar_EST_120301b_c17777%7Cfungal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13808%7Ccls.for.249917-251189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.249917-251189.Ar_EST_120301b_c13808%7Ccls.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:97 now processing 0
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...processing 0 of 3
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...processing 0 of 2
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flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:89 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:71 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:60 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:85 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:79 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:74 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:70 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:82 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:72 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/00/01/AR_HYBRID_130113_TINTIN_EF2ON_C23//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C23/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:83 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.for.15123-17086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.15123-17086.gi%7C284089856%7Cgb%7CEFC43511%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.for.16848-18751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18751.gi%7C284094339%7Cgb%7CEFC47973%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.for.16848-18457.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.16848-18457.gi%7C284088678%7Cgb%7CEFC42340%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284094128%7Cgb%7CEFC47763%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284093755%7Cgb%7CEFC47392%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.for.18785-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18785-20125.gi%7C284084671%7Cgb%7CEFC38361%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284087410%7Cgb%7CEFC41080%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.for.18767-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18767-20125.gi%7C284095769%7Cgb%7CEFC49399%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.for.18821-20125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.18821-20125.gi%7C284088777%7Cgb%7CEFC42438%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.for.20271-31022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.20271-31022.gi%7C284096300%7Cgb%7CEFC49928%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.35827-36896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35827-36896.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.for.35878-38883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.35878-38883.gi%7C284093627%7Cgb%7CEFC47264%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.for.38660-42327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.38660-42327.gi%7C284093553%7Cgb%7CEFC47190%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.for.41842-43571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41842-43571.gi%7C284088699%7Cgb%7CEFC42361%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.for.41803-44573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41803-44573.gi%7C284093661%7Cgb%7CEFC47298%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.for.41782-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41782-43508.gi%7C284081561%7Cgb%7CEFC35518%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.for.41800-43481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41800-43481.gi%7C284082242%7Cgb%7CEFC35988%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.for.41833-43508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41833-43508.gi%7C284088654%7Cgb%7CEFC42316%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.for.41836-43487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.41836-43487.gi%7C284096156%7Cgb%7CEFC49785%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.47476-49712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47476-49712.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.for.47515-49742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47515-49742.gi%7C284095549%7Cgb%7CEFC49179%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.45949-50849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.45949-50849.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.47530-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47530-49751.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.47503-49751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.47503-49751.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.51477-53404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.51477-53404.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.61571-62913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.61571-62913.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.for.62265-63643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.62265-63643.gi%7C284095323%7Cgb%7CEFC48954%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.for.67536-70556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.67536-70556.gi%7C284083272%7Cgb%7CEFC36977%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.for.66036-69451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.66036-69451.gi%7C284082602%7Cgb%7CEFC36317%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.for.80675-81717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80675-81717.gi%7C284094585%7Cgb%7CEFC48219%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.for.80961-82908.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.80961-82908.gi%7C284086165%7Cgb%7CEFC39843%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.for.90632-92652.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.90632-92652.gi%7C284095450%7Cgb%7CEFC49081%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.for.102826-104105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.102826-104105.gi%7C284096532%7Cgb%7CEFC50160%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.for.105563-107235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.105563-107235.gi%7C284096604%7Cgb%7CEFC50232%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.for.111090-112204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111090-112204.gi%7C284081521%7Cgb%7CEFC35491%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.for.111030-113400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.111030-113400.gi%7C284084639%7Cgb%7CEFC38329%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.110985-113445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110985-113445.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.for.110076-113538.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.110076-113538.gi%7C284083208%7Cgb%7CEFC36914%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.118409-122010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.118409-122010.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.for.132648-134686.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.132648-134686.gi%7C284095109%7Cgb%7CEFC48741%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.135931-138842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138842.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.136030-138848.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136030-138848.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.135931-138797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.135931-138797.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.136051-138770.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.136051-138770.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.142341-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142341-144069.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.for.142602-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142602-143862.gi%7C284089938%7Cgb%7CEFC43592%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.142308-144015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142308-144015.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.142347-144039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142347-144039.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.142755-143961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142755-143961.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.142329-143964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-143964.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.142922-143862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142922-143862.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.142329-144069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.142329-144069.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.for.144795-148300.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.144795-148300.gi%7C284096149%7Cgb%7CEFC49778%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C167966176%7Cgb%7CACA13169%2E1%7C.for.146940-147964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.146940-147964.gi%7C167966176%7Cgb%7CACA13169%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.for.147667-149081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.147667-149081.gi%7C284092877%7Cgb%7CEFC46517%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.for.152591-154551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.152591-154551.gi%7C284092102%7Cgb%7CEFC45745%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.for.157271-160187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.157271-160187.gi%7C284096560%7Cgb%7CEFC50188%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.for.170945-172743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.170945-172743.gi%7C284097079%7Cgb%7CEFC50706%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.186873-188374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186873-188374.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.for.187245-188218.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187245-188218.gi%7C284081870%7Cgb%7CEFC35710%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.187029-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187029-188311.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.187056-188302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187056-188302.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.186795-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186795-188311.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.186999-188311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.186999-188311.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.187257-188377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.187257-188377.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.for.188731-189859.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188731-189859.gi%7C284084731%7Cgb%7CEFC38420%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.for.188758-189922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.188758-189922.gi%7C284091151%7Cgb%7CEFC44799%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.for.189761-191601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.189761-191601.gi%7C284092335%7Cgb%7CEFC45977%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.192664-194631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192664-194631.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.for.192772-194592.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.192772-194592.gi%7C284084844%7Cgb%7CEFC38533%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.for.195482-197340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.195482-197340.gi%7C284096999%7Cgb%7CEFC50626%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.for.204484-207515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.204484-207515.gi%7C284090525%7Cgb%7CEFC44176%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.for.206884-208643.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206884-208643.gi%7C284092835%7Cgb%7CEFC46475%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.for.206881-208613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.206881-208613.gi%7C284087254%7Cgb%7CEFC40925%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.for.210915-212620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.210915-212620.gi%7C284082482%7Cgb%7CEFC36199%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.for.226686-227677.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.226686-227677.gi%7C284080970%7Cgb%7CEFC35250%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.for.228372-230302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.228372-230302.gi%7C284092584%7Cgb%7CEFC46225%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.for.235910-238395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.235910-238395.gi%7C284092876%7Cgb%7CEFC46516%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.for.241641-243023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241641-243023.gi%7C284091153%7Cgb%7CEFC44801%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.for.241626-243062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241626-243062.gi%7C284090946%7Cgb%7CEFC44595%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.for.241596-243501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.241596-243501.gi%7C284092322%7Cgb%7CEFC45964%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.for.244560-245581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244560-245581.gi%7C284083025%7Cgb%7CEFC36733%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.for.244548-245870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244548-245870.gi%7C284093562%7Cgb%7CEFC47199%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.for.244509-245861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.244509-245861.gi%7C284091741%7Cgb%7CEFC45386%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.for.247335-249267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C23.247335-249267.gi%7C284092533%7Cgb%7CEFC46175%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:36 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:29 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:50 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
total clusters:50 now processing 0
total clusters:50 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:50 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:50 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:59 now processing 0
total clusters:59 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:59 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.9352-10168.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14463-15372.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.18981-32275.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38696-44373.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.46148-51894.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.61731-63443.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.70279-71363.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.80874-81517.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.86239-87767.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.90388-93132.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.99226-100492.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.103005-107100.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.108829-109885.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.116023-117455.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.142507-144109.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.146252-148124.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.150432-151691.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.152337-154351.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.167493-169791.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.183953-188177.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.189960-191401.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.195681-197140.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.203899-204868.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.213061-214168.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.217919-218994.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.222876-224478.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.228571-230102.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.231305-232448.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.238438-243544.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.247385-250515.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.6536-7536.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.10977-13017.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.13115-14844.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.17047-18257.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.32275-34205.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.36077-38683.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.51937-57153.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.57523-59134.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.60008-61695.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.63036-64109.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.66235-70356.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.71031-71995.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.72195-73370.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.74091-78667.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.81127-82903.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.85294-86152.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87986-88898.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.93752-95344.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.110275-115655.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.118582-121986.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.122183-131308.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.132669-135499.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.136097-138682.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.141223-142230.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.147866-148881.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.157470-159987.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.159998-161432.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/57_0.167005-167926.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/58_0.169548-170498.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/59_0.171144-172543.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/60_0.188930-189942.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/61_0.191954-194431.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/62_0.200842-201690.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/63_0.204518-208443.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/64_0.211114-212420.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/65_0.213914-214887.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/66_0.220064-221720.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/67_0.227763-228614.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/68_0.236109-238283.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/69_0.243175-245670.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/70_0.250116-250989.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C24
Length: 107845
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:2 current j:0
j_size:2 current j:1
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C24.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:6 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1193%7Clate.for.1-1367.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1367.120301b_Contig1193%7Clate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3787%7Clate.for.1-1517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.1-1517.Ar_EST_120301b_c3787%7Clate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14331%7Ccls.for.3201-4608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.3201-4608.Ar_EST_120301b_c14331%7Ccls.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14231%7Cprotein.for.4815-6119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.4815-6119.Ar_EST_120301b_c14231%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18348%7Ccll.for.14932-16445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.14932-16445.Ar_EST_120301b_c18348%7Ccll.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19847%7Cgpi.for.16578-18442.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16578-18442.Ar_EST_120301b_c19847%7Cgpi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11791%7Cgpi.for.17765-19120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.17765-19120.Ar_EST_120301b_c11791%7Cgpi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.for.23474-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23474-26040.Ar_EST_120301b_c15639%7Ceb3rody02gk4bl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1030%7Cprotein.for.23403-26040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.23403-26040.Ar_EST_120301b_c1030%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.for.26353-27684.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.26353-27684.Ar_EST_120301b_c17732%7Cest_ssal_evd_45206.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18177%7Chx195251.for.28612-29656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.28612-29656.Ar_EST_120301b_c18177%7Chx195251.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12724%7Cu4.for.34991-36090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.34991-36090.Ar_EST_120301b_c12724%7Cu4.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8833%7Cprotein.for.35163-36584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.35163-36584.Ar_EST_120301b_c8833%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13085%7C255376557.for.38544-39869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.38544-39869.Ar_EST_120301b_c13085%7C255376557.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3699%7Ctpr.for.41370-43105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.41370-43105.Ar_EST_120301b_c3699%7Ctpr.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c505%7Ccytochrome.for.42948-44200.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.42948-44200.Ar_EST_120301b_c505%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15493%7Chypothetical.for.49628-50870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.49628-50870.Ar_EST_120301b_c15493%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.for.50334-51728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50334-51728.Ar_EST_120301b_c2223%7C3-hydroxyisobutyryl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13348%7C---NA---.for.50969-52069.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.50969-52069.Ar_EST_120301b_c13348%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8134%7CPJ1444.for.51579-53657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.51579-53657.Ar_EST_120301b_c8134%7CPJ1444.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18835%7C---NA---.for.53933-55329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53933-55329.Ar_EST_120301b_c18835%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7681%7Ccell.for.53935-55251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55251.Ar_EST_120301b_rep_c7681%7Ccell.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20521%7C---NA---.for.53935-55086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.53935-55086.Ar_EST_120301b_rep_c20521%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13477%7C---NA---.for.56717-57809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.56717-57809.Ar_EST_120301b_c13477%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7315%7Coxysterol-binding.for.57696-59731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57696-59731.Ar_EST_120301b_rep_c7315%7Coxysterol-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7217%7Coxysterol-binding.for.57465-59619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57465-59619.Ar_EST_120301b_rep_c7217%7Coxysterol-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7183%7Coxysterol-binding.for.57606-59167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.57606-59167.Ar_EST_120301b_rep_c7183%7Coxysterol-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7334%7Coxysterol.for.58089-59443.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.58089-59443.Ar_EST_120301b_rep_c7334%7Coxysterol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12557%7Cfm132192.for.59433-60491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.59433-60491.Ar_EST_120301b_c12557%7Cfm132192.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18461%7Cbactericidal.for.63637-65201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.63637-65201.Ar_EST_120301b_c18461%7Cbactericidal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9729%7Cmucin-.for.66148-67658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.66148-67658.Ar_EST_120301b_c9729%7Cmucin-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9330%7Cuvb-resistance.for.68944-70534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.68944-70534.Ar_EST_120301b_c9330%7Cuvb-resistance.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10894%7Cdomain-containing.for.71789-72913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.71789-72913.Ar_EST_120301b_c10894%7Cdomain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3071%7Cdomain-containing.for.70951-72815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.70951-72815.Ar_EST_120301b_c3071%7Cdomain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8995%7Cdomain-containing.for.72568-74088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72568-74088.Ar_EST_120301b_c8995%7Cdomain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3896%7Csenescence-associated.for.72282-73682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.72282-73682.Ar_EST_120301b_c3896%7Csenescence-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1150%7Caara_dicdi.for.73122-74881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.73122-74881.Ar_EST_120301b_c1150%7Caara_dicdi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9186%7C40s.for.76695-77870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76695-77870.Ar_EST_120301b_rep_c9186%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1960%7Cmeloidogyne.for.78849-80178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.78849-80178.Ar_EST_120301b_c1960%7Cmeloidogyne.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10660%7Canolis.for.79275-80557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79275-80557.Ar_EST_120301b_c10660%7Canolis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16062%7Cmitochondrial.for.79842-81299.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79842-81299.Ar_EST_120301b_c16062%7Cmitochondrial.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18366%7C---NA---.for.81065-82374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.81065-82374.Ar_EST_120301b_c18366%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8209%7Cudp-glucose.for.82553-83976.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82553-83976.Ar_EST_120301b_c8209%7Cudp-glucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19592%7Cudp-glucose.for.82194-83523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.82194-83523.Ar_EST_120301b_c19592%7Cudp-glucose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c201%7Cperoxidase.for.89062-90517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.89062-90517.Ar_EST_120301b_c201%7Cperoxidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14840%7Cankyrin.for.90146-91704.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.90146-91704.Ar_EST_120301b_c14840%7Cankyrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.for.91385-92665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.91385-92665.Ar_EST_120301b_c17608%7Chydroxycinnamoyl-coenzyme.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1727%7Cprotein.for.93442-94838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.93442-94838.Ar_EST_120301b_c1727%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12096%7Cbj057728.for.94158-95401.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94158-95401.Ar_EST_120301b_c12096%7Cbj057728.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2186%7C03ju.for.94951-96270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.94951-96270.Ar_EST_120301b_c2186%7C03ju.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig59%7Cprotein.for.96335-98895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.96335-98895.120301b_Contig59%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1249%7Ctype.for.100365-101735.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.100365-101735.Ar_EST_120301b_c1249%7Ctype.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6838%7Cchaperone.for.99052-100777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.99052-100777.Ar_EST_120301b_rep_c6838%7Cchaperone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig246%7Cprotein.for.98366-101485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.98366-101485.120301b_Contig246%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10371%7Cviral.for.101874-103650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.101874-103650.Ar_EST_120301b_c10371%7Cviral.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1846%7Ccu580856.for.103580-104910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.103580-104910.Ar_EST_120301b_c1846%7Ccu580856.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10785%7C---NA---.for.105911-107157.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.105911-107157.Ar_EST_120301b_c10785%7C---NA---.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:34 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:27 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:49 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:39 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:32 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:42 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:38 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/F1/58/AR_HYBRID_130113_TINTIN_EF2ON_C24//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C24/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:19 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.for.16805-18843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.16805-18843.gi%7C284093049%7Cgb%7CEFC46688%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.for.18864-20806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.18864-20806.gi%7C284082549%7Cgb%7CEFC36265%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.30087-33385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33385.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.30105-33424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33424.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.for.30096-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33337.gi%7C284085983%7Cgb%7CEFC39663%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.30102-33373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33373.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.30099-32320.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-32320.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.30102-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33400.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.30093-33382.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33382.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.30087-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33394.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.30105-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-33337.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.30087-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33403.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.30090-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30090-33337.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.30093-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33346.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.30099-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33343.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.30096-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30096-33394.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.30099-33469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33469.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.30099-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33346.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.30099-33403.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33403.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.30072-33400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30072-33400.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.30048-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30048-33337.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.29985-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.29985-33346.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.30102-33343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33343.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.30105-31525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30105-31525.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.for.30099-33394.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33394.gi%7C284092204%7Cgb%7CEFC45847%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.30099-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33337.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.30099-33409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30099-33409.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.30042-33352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30042-33352.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.30102-33340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33340.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.30015-32359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30015-32359.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.for.30087-33346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30087-33346.gi%7C284085299%7Cgb%7CEFC38984%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.30093-33430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30093-33430.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.30102-33337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30102-33337.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.30132-32341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.30132-32341.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.for.39920-41115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39920-41115.gi%7C284091375%7Cgb%7CEFC45022%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.for.39695-41100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.39695-41100.gi%7C284087092%7Cgb%7CEFC40764%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.for.43545-45547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43545-45547.gi%7C284089341%7Cgb%7CEFC42999%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.for.43533-45508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.43533-45508.gi%7C284092455%7Cgb%7CEFC46097%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.for.44061-45661.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.44061-45661.gi%7C284087860%7Cgb%7CEFC41527%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.for.65301-66295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.65301-66295.gi%7C284092586%7Cgb%7CEFC46227%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.for.76723-77714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.76723-77714.gi%7C284091528%7Cgb%7CEFC45174%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.for.79834-81594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C24.79834-81594.gi%7C284087484%7Cgb%7CEFC41153%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:8 now processing 0
total clusters:8 now processing 0
total clusters:8 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:8 now processing 0
total clusters:8 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:8 now processing 0
total clusters:8 now processing 0
total clusters:8 now processing 0
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:5 now processing 0
total clusters:5 now processing 0
...processing 0 of 24
...processing 1 of 24
...processing 2 of 24
...processing 3 of 24
...processing 4 of 24
...processing 5 of 24
...processing 6 of 24
...processing 7 of 24
...processing 8 of 24
...processing 9 of 24
...processing 10 of 24
...processing 11 of 24
...processing 12 of 24
...processing 13 of 24
...processing 14 of 24
...processing 15 of 24
...processing 16 of 24
...processing 17 of 24
...processing 18 of 24
...processing 19 of 24
...processing 20 of 24
...processing 21 of 24
...processing 22 of 24
...processing 23 of 24
total clusters:5 now processing 0
total clusters:5 now processing 0
total clusters:5 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:17 now processing 0
total clusters:17 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 19
...processing 1 of 19
...processing 2 of 19
...processing 3 of 19
...processing 4 of 19
...processing 5 of 19
...processing 6 of 19
...processing 7 of 19
...processing 8 of 19
...processing 9 of 19
...processing 10 of 19
...processing 11 of 19
...processing 12 of 19
...processing 13 of 19
...processing 14 of 19
...processing 15 of 19
...processing 16 of 19
...processing 17 of 19
...processing 18 of 19
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.15131-16245.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.26552-27484.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.28610-29472.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.38743-39674.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.41556-42905.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.43142-44000.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.57628-59531.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.63821-65003.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.79048-80363.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.81264-82174.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82393-83776.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.89253-90332.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.93641-94643.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.95103-96070.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.98565-101535.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.102073-103452.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.106110-106962.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.0-1317.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.3400-5919.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.16775-18643.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.19063-20606.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.23602-24576.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30214-33224.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.35162-36384.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.40119-40915.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.43732-45461.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.49827-53513.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.54132-55129.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.56916-57609.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.59632-60457.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.65500-66095.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.66347-67458.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69135-70334.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.71150-74681.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.76922-77514.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.80033-81394.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.90345-91504.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.91584-92465.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.103777-104710.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C25
Length: 12557
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C25.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:0 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12213%7Cserum.for.4686-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4686-6013.Ar_EST_120301b_c12213%7Cserum.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13871%7Cserum.for.4474-5739.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-5739.Ar_EST_120301b_c13871%7Cserum.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16373%7Cserum.for.4474-6013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.4474-6013.Ar_EST_120301b_c16373%7Cserum.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17460%7Cpredicted.for.7767-9114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.7767-9114.Ar_EST_120301b_c17460%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12919%7Cca48en0002_i.for.8552-9892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.8552-9892.Ar_EST_120301b_c12919%7Cca48en0002_i.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2764%7Cnadh.for.11528-12557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.11528-12557.Ar_EST_120301b_c2764%7Cnadh.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:5 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:5 now processing 0
total clusters:5 now processing 0
total clusters:5 now processing 0
total clusters:5 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:7 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:10 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:5 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:9 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:6 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:14 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:12 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:10 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:5 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/86/92/AR_HYBRID_130113_TINTIN_EF2ON_C25//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C25/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:8 hits
collecting blastx reports
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.for.5442-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C25.5442-6683.gi%7C284091972%7Cgb%7CEFC45616%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:4 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:4 now processing 0
total clusters:4 now processing 0
total clusters:4 now processing 0
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:1 now processing 0
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.4673-5813.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7966-9692.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.11727-12557.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C26
Length: 30228
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:3 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C26.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:0 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1435%7Cshort-chain.for.1-966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1-966.Ar_EST_120301b_c1435%7Cshort-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.for.533-2079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.533-2079.Ar_EST_120301b_rep_c4547%7Cpeptidyl-prolyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13051%7Cdiphosphomevalonate.for.2604-3822.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2604-3822.Ar_EST_120301b_c13051%7Cdiphosphomevalonate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9753%7Cdiphosphomevalonate.for.3048-4517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.3048-4517.Ar_EST_120301b_c9753%7Cdiphosphomevalonate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17359%7Cpredicted.for.4191-5513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.4191-5513.Ar_EST_120301b_c17359%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16806%7Cheat.for.6535-7644.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7644.Ar_EST_120301b_rep_c16806%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6111%7Cunq118-.for.7137-8101.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7137-8101.Ar_EST_120301b_rep_c6111%7Cunq118-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20263%7Cm105c12r.for.6734-7787.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6734-7787.Ar_EST_120301b_rep_c20263%7Cm105c12r.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6339%7C---NA---.for.6541-7790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6541-7790.Ar_EST_120301b_rep_c6339%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4077%7Cprotein.for.6643-8283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6643-8283.Ar_EST_120301b_rep_c4077%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20244%7Clim.for.6558-7789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6558-7789.Ar_EST_120301b_rep_c20244%7Clim.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11314%7Cgtp-binding.for.6970-8126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6970-8126.Ar_EST_120301b_rep_c11314%7Cgtp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20404%7Cprotein.for.7103-8081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7103-8081.Ar_EST_120301b_rep_c20404%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19526%7Ccazo.for.6535-7828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.6535-7828.Ar_EST_120301b_rep_c19526%7Ccazo.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9415%7C000826otya999025ht.for.7770-9085.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.7770-9085.Ar_EST_120301b_c9415%7C000826otya999025ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13240%7Cprotein.for.12830-14321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.12830-14321.Ar_EST_120301b_c13240%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.for.16744-18213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.16744-18213.Ar_EST_120301b_rep_c4447%7Cpathogenesis-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1392%7Cglycine.for.18463-20388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18463-20388.120301b_Contig1392%7Cglycine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig112%7Cglycine.for.19277-20741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.19277-20741.120301b_Contig112%7Cglycine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2532%7Cglycine.for.17984-19620.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.17984-19620.Ar_EST_120301b_c2532%7Cglycine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2582%7Cglycine.for.20162-21458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20162-21458.Ar_EST_120301b_c2582%7Cglycine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1819%7Cglycine.for.20617-22092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.20617-22092.Ar_EST_120301b_c1819%7Cglycine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18083%7Cpredicted.for.21304-22699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.21304-22699.Ar_EST_120301b_c18083%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1288%7Csec1.for.22782-24229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22782-24229.Ar_EST_120301b_c1288%7Csec1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4755%7Cring.for.22158-23653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22158-23653.Ar_EST_120301b_rep_c4755%7Cring.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13389%7Cproliferation-associated.for.22647-23597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22647-23597.Ar_EST_120301b_rep_c13389%7Cproliferation-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18239%7Cprotein.for.24795-26024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.24795-26024.Ar_EST_120301b_c18239%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14682%7Cfy377012.for.25095-26211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.25095-26211.Ar_EST_120301b_c14682%7Cfy377012.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12457%7Cdk457596.for.28008-29513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.28008-29513.Ar_EST_120301b_c12457%7Cdk457596.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:30 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:34 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:46 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:30 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:39 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:24 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:33 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/C6/21/AR_HYBRID_130113_TINTIN_EF2ON_C26//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C26/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:29 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284081155%7Cgb%7CEFC35313%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.for.767-2080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2080.gi%7C284092983%7Cgb%7CEFC46623%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.for.803-2092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.803-2092.gi%7C284096875%7Cgb%7CEFC50502%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.for.767-2017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2017.gi%7C284090267%7Cgb%7CEFC43920%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284092579%7Cgb%7CEFC46220%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.for.972-2062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.972-2062.gi%7C284093592%7Cgb%7CEFC47229%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.for.800-2068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2068.gi%7C284089692%7Cgb%7CEFC43348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.for.800-2023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.800-2023.gi%7C284093109%7Cgb%7CEFC46748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.for.542-2104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.542-2104.gi%7C284085514%7Cgb%7CEFC39197%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.for.767-2020.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2020.gi%7C284088464%7Cgb%7CEFC42127%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.for.752-2098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.752-2098.gi%7C284094883%7Cgb%7CEFC48516%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284095464%7Cgb%7CEFC49095%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.for.767-2074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-2074.gi%7C284090503%7Cgb%7CEFC44154%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.for.767-1996.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.767-1996.gi%7C284086458%7Cgb%7CEFC40134%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.1576-3068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1576-3068.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.for.1795-2795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1795-2795.gi%7C284081326%7Cgb%7CEFC35393%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.for.1464-3077.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1464-3077.gi%7C284092568%7Cgb%7CEFC46209%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.for.1573-3146.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1573-3146.gi%7C284089451%7Cgb%7CEFC43108%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.for.1735-2825.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1735-2825.gi%7C284089702%7Cgb%7CEFC43358%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.for.1341-3107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.1341-3107.gi%7C284084444%7Cgb%7CEFC38137%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.for.2605-4508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.2605-4508.gi%7C284082844%7Cgb%7CEFC36555%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.for.18327-22000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.18327-22000.gi%7C284091841%7Cgb%7CEFC45486%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.for.22129-23267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C26.22129-23267.gi%7C284081842%7Cgb%7CEFC35690%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:5 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:5 now processing 0
total clusters:5 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:5 now processing 0
total clusters:5 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:5 now processing 0
...processing 0 of 11
...processing 1 of 11
...processing 2 of 11
...processing 3 of 11
...processing 4 of 11
...processing 5 of 11
...processing 6 of 11
...processing 7 of 11
...processing 8 of 11
...processing 9 of 11
...processing 10 of 11
total clusters:5 now processing 0
total clusters:5 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:5 now processing 0
total clusters:5 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:7 now processing 0
total clusters:7 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:7 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.741-1904.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4379-5313.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.6734-7628.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.7969-8885.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.18183-21892.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.28207-29347.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.0-766.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.1540-4317.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.13029-14137.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.16943-18013.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.21503-24123.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C28
Length: 140015
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C28.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:4 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16986%7Cvcdc13845.for.460-1786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.460-1786.Ar_EST_120301b_c16986%7Cvcdc13845.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11015%7Cmgc84566.for.4593-6206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.4593-6206.Ar_EST_120301b_c11015%7Cmgc84566.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11527%7Chypothetical.for.5457-7204.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5457-7204.Ar_EST_120301b_c11527%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16112%7Cvps28.for.5450-6585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.5450-6585.Ar_EST_120301b_c16112%7Cvps28.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1268%7Creep3.for.7225-8749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7225-8749.Ar_EST_120301b_c1268%7Creep3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12533%7C---NA---.for.9019-10308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9019-10308.Ar_EST_120301b_c12533%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1967%7C3.for.7966-10076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7966-10076.Ar_EST_120301b_c1967%7C3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10582%7Cqct.for.9913-11212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.9913-11212.Ar_EST_120301b_c10582%7Cqct.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c343%7Ckelch.for.10506-11991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.10506-11991.Ar_EST_120301b_c343%7Ckelch.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3655%7Calpha-mannosidase.for.11467-14155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.11467-14155.Ar_EST_120301b_c3655%7Calpha-mannosidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c499%7Cglycosyl.for.13565-15516.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.13565-15516.Ar_EST_120301b_c499%7Cglycosyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c650%7Cfq204399.for.15296-16768.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.15296-16768.Ar_EST_120301b_c650%7Cfq204399.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12233%7Cautophagy-related.for.16224-17667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.16224-17667.Ar_EST_120301b_c12233%7Cautophagy-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10021%7Ceukaryotic.for.19860-21179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.19860-21179.Ar_EST_120301b_c10021%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13248%7Chypothetical.for.26913-28208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.26913-28208.Ar_EST_120301b_c13248%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3283%7Cdenn.for.27515-29594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.27515-29594.Ar_EST_120301b_c3283%7Cdenn.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13847%7Cprotein.for.34193-35519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.34193-35519.Ar_EST_120301b_c13847%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15634%7Cdna.for.35289-36838.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.35289-36838.Ar_EST_120301b_c15634%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9717%7CUncharacterized.for.38490-40142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.38490-40142.Ar_EST_120301b_c9717%7CUncharacterized.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15012%7Cleukocyte.for.39997-41185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.39997-41185.Ar_EST_120301b_c15012%7Cleukocyte.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10635%7Cserine.for.40921-42054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40921-42054.Ar_EST_120301b_c10635%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig650%7Cserine.for.41091-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41091-43327.120301b_Contig650%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c731%7Cfn028540.for.42571-43798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42571-43798.Ar_EST_120301b_c731%7Cfn028540.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9323%7Caplysia.for.42974-44766.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.42974-44766.Ar_EST_120301b_c9323%7Caplysia.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12855%7Ccbwb.for.46476-47874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46476-47874.Ar_EST_120301b_c12855%7Ccbwb.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17067%7Csentrin-specific.for.47159-48553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47159-48553.Ar_EST_120301b_c17067%7Csentrin-specific.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5223%7Cimsp1_venph.for.56711-58040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.56711-58040.Ar_EST_120301b_rep_c5223%7Cimsp1_venph.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17363%7Cpredicted.for.57604-58980.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.57604-58980.Ar_EST_120301b_c17363%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15345%7Cats1.for.58530-59811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.58530-59811.Ar_EST_120301b_c15345%7Cats1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15400%7Csa2-vi-b8.for.61106-62363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.61106-62363.Ar_EST_120301b_c15400%7Csa2-vi-b8.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c653%7Ccytochrome.for.69192-71656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69192-71656.Ar_EST_120301b_c653%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6854%7Cmedium-chain.for.69883-71610.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69883-71610.Ar_EST_120301b_rep_c6854%7Cmedium-chain.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5386%7Crelated.for.69897-71031.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.69897-71031.Ar_EST_120301b_rep_c5386%7Crelated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2281%7Ckti12.for.71371-72941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71371-72941.Ar_EST_120301b_c2281%7Ckti12.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12014%7Cprotein.for.74568-76292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74568-76292.Ar_EST_120301b_c12014%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2496%7Cloc496076.for.75620-77212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.75620-77212.Ar_EST_120301b_c2496%7Cloc496076.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13121%7Cubiquitin-conjugating.for.76567-77772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76567-77772.Ar_EST_120301b_c13121%7Cubiquitin-conjugating.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17049%7Cubiquitin-conjugating.for.76656-78111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.76656-78111.Ar_EST_120301b_c17049%7Cubiquitin-conjugating.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15707%7Cubiquitin-conjugating.for.77963-79236.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.77963-79236.Ar_EST_120301b_c15707%7Cubiquitin-conjugating.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19531%7Ccytochrome.for.83617-84850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83617-84850.Ar_EST_120301b_rep_c19531%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20458%7Cg5p_21469.for.82987-84183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82987-84183.Ar_EST_120301b_rep_c20458%7Cg5p_21469.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig525%7Ccytochrome.for.82529-84894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82529-84894.120301b_Contig525%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11444%7Ccytochrome.for.82958-84201.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82958-84201.Ar_EST_120301b_rep_c11444%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20388%7Ccytochrome.for.82934-84490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82934-84490.Ar_EST_120301b_rep_c20388%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12324%7Cprobable.for.83655-84889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.83655-84889.Ar_EST_120301b_rep_c12324%7Cprobable.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20161%7Csoluble.for.82773-83790.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.82773-83790.Ar_EST_120301b_rep_c20161%7Csoluble.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig757%7Cpredicted.for.84687-86383.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.84687-86383.120301b_Contig757%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig881%7Cariadne-like.for.85969-88271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.85969-88271.120301b_Contig881%7Cariadne-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2491%7Cprotein.for.88092-90169.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.88092-90169.Ar_EST_120301b_c2491%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17100%7Csenescence-associated.for.90025-91440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90025-91440.Ar_EST_120301b_c17100%7Csenescence-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16583%7Ccolon.for.90585-91993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.90585-91993.Ar_EST_120301b_c16583%7Ccolon.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15294%7Cpoly.for.91935-93211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.91935-93211.Ar_EST_120301b_c15294%7Cpoly.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig697%7Cankrd32.for.97243-98654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.97243-98654.120301b_Contig697%7Cankrd32.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8635%7Cbrct.for.98441-100125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.98441-100125.Ar_EST_120301b_c8635%7Cbrct.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.for.99382-100569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99382-100569.Ar_EST_120301b_rep_c12958%7Cphosphoenolpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.for.99366-101327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99366-101327.Ar_EST_120301b_rep_c7209%7Cphosphoenolpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.for.100295-101322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100295-101322.Ar_EST_120301b_rep_c13873%7Cphosphoenolpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.for.99339-102017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99339-102017.Ar_EST_120301b_rep_c4052%7Cphosphoenolpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.for.99792-101500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99792-101500.Ar_EST_120301b_rep_c5671%7Cphosphoenolpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.for.100302-101725.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100302-101725.Ar_EST_120301b_rep_c4277%7Cphosphoenolpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16128%7Ctranslation.for.101948-103355.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101948-103355.Ar_EST_120301b_c16128%7Ctranslation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15868%7Ckn511.for.102976-104447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.102976-104447.Ar_EST_120301b_c15868%7Ckn511.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.for.105801-107350.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.105801-107350.Ar_EST_120301b_rep_c7068%7C%28%2B%29-neomenthol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10200%7Cmetaxin.for.107922-109515.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.107922-109515.Ar_EST_120301b_c10200%7Cmetaxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17456%7Cactinin-like.for.114899-116189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.114899-116189.Ar_EST_120301b_c17456%7Cactinin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig155%7Cww.for.115764-117485.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.115764-117485.120301b_Contig155%7Cww.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c522%7Cprotein.for.116877-118241.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.116877-118241.Ar_EST_120301b_c522%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14850%7Ccayc.for.118074-119429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118074-119429.Ar_EST_120301b_c14850%7Ccayc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1195%7Chypothetical.for.119558-121154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.119558-121154.Ar_EST_120301b_c1195%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c724%7Chypothetical.for.118804-120405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.118804-120405.Ar_EST_120301b_c724%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13008%7Chypothetical.for.120208-121407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120208-121407.Ar_EST_120301b_c13008%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3587%7Cprotein.for.120897-123890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.120897-123890.Ar_EST_120301b_c3587%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8766%7Cdenn.for.123949-125254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123949-125254.Ar_EST_120301b_rep_c8766%7Cdenn.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17570%7Cprotein.for.123430-124522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123430-124522.Ar_EST_120301b_rep_c17570%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18858%7Cdenn.for.123660-125168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.123660-125168.Ar_EST_120301b_c18858%7Cdenn.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3052%7Ccullin.for.125843-127484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125843-127484.Ar_EST_120301b_c3052%7Ccullin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17614%7Ccopper.for.125607-126815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.125607-126815.Ar_EST_120301b_c17614%7Ccopper.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c747%7Cprotein.for.124500-126576.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124500-126576.Ar_EST_120301b_c747%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17078%7Cist_wi5_15381.for.130667-131913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.130667-131913.Ar_EST_120301b_c17078%7Cist_wi5_15381.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17485%7Ccnb66-.for.138702-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138702-140015.Ar_EST_120301b_c17485%7Ccnb66-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2216%7Cnormalized.for.138992-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.138992-140015.Ar_EST_120301b_c2216%7Cnormalized.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2246%7Ccbpn%3A.for.139223-140015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.139223-140015.Ar_EST_120301b_c2246%7Ccbpn%3A.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:54 now processing 0
total clusters:54 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:54 now processing 0
total clusters:54 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
total clusters:54 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:52 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:59 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:52 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:72 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:57 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:71 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:53 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:47 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/CC/2D/AR_HYBRID_130113_TINTIN_EF2ON_C28//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C28/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:41 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.for.1-836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.1-836.gi%7C284083046%7Cgb%7CEFC36754%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.for.7653-8617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.7653-8617.gi%7C284091607%7Cgb%7CEFC45253%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.for.30151-33419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.30151-33419.gi%7C284092028%7Cgb%7CEFC45672%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.for.32804-34254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.32804-34254.gi%7C284090471%7Cgb%7CEFC44123%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.for.33998-37035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33998-37035.gi%7C284096685%7Cgb%7CEFC50312%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.for.33818-37032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.33818-37032.gi%7C284088045%7Cgb%7CEFC41711%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.for.41294-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41294-42622.gi%7C284090230%7Cgb%7CEFC43883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.for.40922-43327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40922-43327.gi%7C284094055%7Cgb%7CEFC47690%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.for.41339-42475.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41339-42475.gi%7C284082128%7Cgb%7CEFC35900%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.41336-42448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42448.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.for.40940-42625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40940-42625.gi%7C284092196%7Cgb%7CEFC45839%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089069%7Cgb%7CEFC42729%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.for.41318-42628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41318-42628.gi%7C284088445%7Cgb%7CEFC42108%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.for.40934-42631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.40934-42631.gi%7C284089047%7Cgb%7CEFC42707%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.for.41303-42622.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41303-42622.gi%7C284092545%7Cgb%7CEFC46187%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.for.41336-42763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41336-42763.gi%7C284092133%7Cgb%7CEFC45776%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.for.41279-42607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.41279-42607.gi%7C284091257%7Cgb%7CEFC44905%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.for.46019-47220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.46019-47220.gi%7C284083391%7Cgb%7CEFC37095%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.for.47156-48682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.47156-48682.gi%7C284096907%7Cgb%7CEFC50534%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.for.48536-51738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.48536-51738.gi%7C284095965%7Cgb%7CEFC49594%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.for.51320-53360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.51320-53360.gi%7C284093119%7Cgb%7CEFC46758%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.for.54524-55623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54524-55623.gi%7C284093777%7Cgb%7CEFC47413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.for.54593-55617.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54593-55617.gi%7C284096265%7Cgb%7CEFC49893%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.for.54270-57096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.54270-57096.gi%7C284097069%7Cgb%7CEFC50696%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.67970-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.67964-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67964-69033.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.68012-69093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69093.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.68009-69099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69099.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.67967-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67967-69084.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.67925-69084.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67925-69084.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.67982-69240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67982-69240.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.68009-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69078.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.67991-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69033.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.67919-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67919-69033.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.67922-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67922-69105.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.68009-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69081.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.68006-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69042.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.67970-69075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67970-69075.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.for.67988-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67988-69033.gi%7C284091293%7Cgb%7CEFC44940%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.67994-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67994-69042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.68012-69039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-69039.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.for.67943-69015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67943-69015.gi%7C284083922%7Cgb%7CEFC37620%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.for.67598-69087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67598-69087.gi%7C284086956%7Cgb%7CEFC40629%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.67874-69132.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67874-69132.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090146%7Cgb%7CEFC43799%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.67928-69057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67928-69057.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.67961-69042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69042.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.67856-69054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67856-69054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.for.67865-69255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67865-69255.gi%7C284082394%7Cgb%7CEFC36117%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.67946-69105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69105.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.67991-69165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67991-69165.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.for.68006-69000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68006-69000.gi%7C284081757%7Cgb%7CEFC35637%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.68012-68991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68012-68991.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.for.67847-69081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67847-69081.gi%7C284085724%7Cgb%7CEFC39406%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.67895-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67895-69036.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.for.67946-69078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67946-69078.gi%7C284090143%7Cgb%7CEFC43796%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.67889-69003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67889-69003.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.67961-69060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67961-69060.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.for.67934-69036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67934-69036.gi%7C284083967%7Cgb%7CEFC37665%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.68009-69033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68009-69033.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.67853-69180.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.67853-69180.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.68033-69018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.68033-69018.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.70651-71597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.70651-71597.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.for.71334-73035.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.71334-73035.gi%7C284089534%7Cgb%7CEFC43191%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.for.74620-75881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.74620-75881.gi%7C284081900%7Cgb%7CEFC35731%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.for.78118-79271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.78118-79271.gi%7C284090744%7Cgb%7CEFC44394%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.for.100561-101797.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.100561-101797.gi%7C284081997%7Cgb%7CEFC35800%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.for.99379-101743.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.99379-101743.gi%7C284093069%7Cgb%7CEFC46708%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C284092634%7Cgb%7CEFC46275%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.for.101489-103371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.101489-103371.gi%7C313471368%7Csp%7CD2VAA9%2E1%7CMTNA_NAEGR.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.for.121181-125102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.121181-125102.gi%7C284084488%7Cgb%7CEFC38180%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.for.124481-127583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127583.gi%7C284093795%7Cgb%7CEFC47431%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.for.124481-127362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C28.124481-127362.gi%7C284093047%7Cgb%7CEFC46686%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:13 now processing 0
total clusters:13 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:13 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:13 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:13 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:25 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:32 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:32 now processing 0
total clusters:32 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.659-1586.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7424-8549.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.27714-29394.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.33003-36835.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.38689-39942.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40196-40985.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.41120-43127.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.46620-48482.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.48735-53160.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.54469-57843.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.82728-84694.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.88291-89969.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.90776-91798.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.103175-104273.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.106000-107152.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.115098-118041.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.118266-125063.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.5656-7004.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.8165-15319.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.15492-17482.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.20059-20981.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.27054-28008.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.30350-33219.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.42770-44566.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.57803-68899.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.69283-71456.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.71533-72835.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.74767-79071.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.84881-88071.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.92125-93011.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.97442-103171.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.124680-127383.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.130866-131713.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.138901-139874.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C29
Length: 126079
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C29.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:10 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:11 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:14 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:8 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:8 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8179%7Cnormalized.for.1097-2149.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.1097-2149.Ar_EST_120301b_rep_c8179%7Cnormalized.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7835%7Cfamily.for.3368-4459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.3368-4459.Ar_EST_120301b_c7835%7Cfamily.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c578%7Clow.for.4287-5641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.4287-5641.Ar_EST_120301b_c578%7Clow.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17375%7C021030oocx024022ht.for.5051-6566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.5051-6566.Ar_EST_120301b_c17375%7C021030oocx024022ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3629%7Cc2.for.7817-9651.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.7817-9651.Ar_EST_120301b_c3629%7Cc2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17542%7Calpha.for.8880-10271.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.8880-10271.Ar_EST_120301b_c17542%7Calpha.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.for.10166-11409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10166-11409.Ar_EST_120301b_rep_c4486%7Calpha-galactosidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3978%7Calpha-galactosidase.for.10095-11343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10095-11343.Ar_EST_120301b_c3978%7Calpha-galactosidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig607%7Calpha-galactosidase.for.10102-12189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10102-12189.120301b_Contig607%7Calpha-galactosidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.for.10109-11040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.10109-11040.Ar_EST_120301b_rep_c13874%7CDEHA2F26840p.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4318%7Cactin-related.for.15717-17094.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15717-17094.Ar_EST_120301b_rep_c4318%7Cactin-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2448%7Cprotein.for.18162-20068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.18162-20068.Ar_EST_120301b_c2448%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1643%7Cgr__ea.for.19898-21165.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.19898-21165.Ar_EST_120301b_c1643%7Cgr__ea.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4667%7Cpeptide.for.20507-21836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20507-21836.Ar_EST_120301b_rep_c4667%7Cpeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13946%7Cfm062691.for.23870-25166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23870-25166.Ar_EST_120301b_c13946%7Cfm062691.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c822%7Cadenylate.for.25563-26995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.25563-26995.Ar_EST_120301b_c822%7Cadenylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15716%7Chypothetical.for.30116-31920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.30116-31920.Ar_EST_120301b_c15716%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8109%7Cpredicted.for.33231-34533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33231-34533.Ar_EST_120301b_c8109%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3842%7Cmagnesium.for.34224-36102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.34224-36102.Ar_EST_120301b_c3842%7Cmagnesium.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11375%7Cepsin.for.37842-39172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.37842-39172.Ar_EST_120301b_c11375%7Cepsin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17650%7Ccre-myo-3.for.38846-40560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.38846-40560.Ar_EST_120301b_c17650%7Ccre-myo-3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17315%7Cheat.for.39637-40968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.39637-40968.Ar_EST_120301b_c17315%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18116%7C-like.for.42889-44275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.42889-44275.Ar_EST_120301b_c18116%7C-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig816%7Cwd.for.43860-45874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43860-45874.120301b_Contig816%7Cwd.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9517%7Ccfnw.for.45449-46761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.45449-46761.Ar_EST_120301b_c9517%7Ccfnw.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13557%7Crhomboid.for.48933-50436.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.48933-50436.Ar_EST_120301b_c13557%7Crhomboid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2074%7C39s.for.52467-53984.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52467-53984.Ar_EST_120301b_c2074%7C39s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12950%7Cnad.for.52392-53486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52392-53486.Ar_EST_120301b_c12950%7Cnad.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2064%7Cdna.for.53309-55811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53309-55811.Ar_EST_120301b_c2064%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20272%7Cdna.for.55582-57416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55582-57416.Ar_EST_120301b_c20272%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8469%7Ccatalytic.for.55014-56440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.55014-56440.Ar_EST_120301b_c8469%7Ccatalytic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14008%7Creplication.for.58157-59604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58157-59604.Ar_EST_120301b_c14008%7Creplication.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17948%7C2-oxoacid.for.68615-69892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.68615-69892.Ar_EST_120301b_c17948%7C2-oxoacid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17240%7Cfy373865.for.71171-72567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.71171-72567.Ar_EST_120301b_c17240%7Cfy373865.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig278%7Cprotein.for.70529-73090.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.70529-73090.120301b_Contig278%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12757%7Cnormalized.for.73057-74393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.73057-74393.Ar_EST_120301b_c12757%7Cnormalized.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19042%7Cmannan-binding.for.82056-83763.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82056-83763.Ar_EST_120301b_c19042%7Cmannan-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7939%7Cmannan-binding.for.82082-83494.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.82082-83494.Ar_EST_120301b_c7939%7Cmannan-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19195%7Cpredicted.for.84202-85409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84202-85409.Ar_EST_120301b_c19195%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9407%7Cpredicted.for.84534-85789.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.84534-85789.Ar_EST_120301b_c9407%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c975%7Cphospholipase.for.85526-86849.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.85526-86849.Ar_EST_120301b_c975%7Cphospholipase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18766%7Cprotein.for.86248-87871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86248-87871.Ar_EST_120301b_c18766%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.for.86726-88045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.86726-88045.Ar_EST_120301b_c8008%7Cest_omyk_evo_818589.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.for.87327-88533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.87327-88533.Ar_EST_120301b_c16106%7Cmm1-0024t-m079-a10-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig780%7Cfy580029.for.88294-89812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.88294-89812.120301b_Contig780%7Cfy580029.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3543%7Cdcn1-like.for.89436-91029.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89436-91029.Ar_EST_120301b_c3543%7Cdcn1-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2727%7Cskp1-like.for.90317-92010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.90317-92010.Ar_EST_120301b_c2727%7Cskp1-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13307%7Chypothetical.for.91504-92833.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.91504-92833.Ar_EST_120301b_c13307%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8761%7Cplant.for.92721-94535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.92721-94535.Ar_EST_120301b_c8761%7Cplant.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18653%7Cvacuolar.for.94821-96247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94821-96247.Ar_EST_120301b_c18653%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7779%7Cribosomal.for.95438-97086.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.95438-97086.Ar_EST_120301b_c7779%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19859%7Cvam6.for.96081-98261.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.96081-98261.Ar_EST_120301b_c19859%7Cvam6.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19889%7Cam524334.for.94360-95913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.94360-95913.Ar_EST_120301b_c19889%7Cam524334.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2947%7Coxoglutarate.for.102452-104208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.102452-104208.Ar_EST_120301b_c2947%7Coxoglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3312%7Coxoglutarate.for.100584-102407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100584-102407.Ar_EST_120301b_c3312%7Coxoglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8241%7Coxoglutarate.for.101538-103504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101538-103504.Ar_EST_120301b_c8241%7Coxoglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c827%7Cxanthine.for.103424-104780.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103424-104780.Ar_EST_120301b_c827%7Cxanthine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3666%7Cxanthine.for.103935-106710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103935-106710.Ar_EST_120301b_c3666%7Cxanthine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c76%7Cxanthine.for.106048-107728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.106048-107728.Ar_EST_120301b_c76%7Cxanthine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13578%7Cxanthine.for.107198-108391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107198-108391.Ar_EST_120301b_c13578%7Cxanthine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.108866-110095.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.108866-110095.Ar_EST_120301b_c15340%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14806%7Cubiquitin.for.112126-113439.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.112126-113439.Ar_EST_120301b_c14806%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10754%7Cfs549801.for.114432-115482.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114432-115482.Ar_EST_120301b_c10754%7Cfs549801.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2885%7Catp-dependent.for.114881-116819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.114881-116819.Ar_EST_120301b_c2885%7Catp-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16854%7Ccns.for.115963-117321.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.115963-117321.Ar_EST_120301b_c16854%7Ccns.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1234%7Cextracellular.for.116926-119073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.116926-119073.Ar_EST_120301b_c1234%7Cextracellular.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.for.118556-119843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.118556-119843.Ar_EST_120301b_c18156%7Cest_bsai_evw_1261795.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16679%7C---NA---.for.119682-120970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.119682-120970.Ar_EST_120301b_c16679%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15340%7C---NA---.for.121298-122521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.121298-122521.Ar_EST_120301b_c15340%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7264%7Celongation.for.122454-123795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122454-123795.Ar_EST_120301b_rep_c7264%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7231%7Ctranslation.for.122649-123799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122649-123799.Ar_EST_120301b_rep_c7231%7Ctranslation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19680%7Celongation.for.122972-124120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122972-124120.Ar_EST_120301b_rep_c19680%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5056%7Celongation.for.123236-124322.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123236-124322.Ar_EST_120301b_rep_c5056%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20204%7Celongation.for.123352-124343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123352-124343.Ar_EST_120301b_rep_c20204%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4033%7Celongation.for.122354-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122354-124484.Ar_EST_120301b_rep_c4033%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig612%7Celongation.for.123121-124432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123121-124432.120301b_Contig612%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7205%7Ctranslation.for.122978-124036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122978-124036.Ar_EST_120301b_rep_c7205%7Ctranslation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15762%7Celongation.for.123409-124481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123409-124481.Ar_EST_120301b_rep_c15762%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig613%7Celongation.for.122770-124010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122770-124010.120301b_Contig613%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18610%7Celongation.for.123405-124479.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123405-124479.Ar_EST_120301b_rep_c18610%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5963%7Celongation.for.122376-123486.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122376-123486.Ar_EST_120301b_rep_c5963%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20041%7Celongation.for.122393-123437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122393-123437.Ar_EST_120301b_rep_c20041%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5394%7Celongation.for.122479-123583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122479-123583.Ar_EST_120301b_rep_c5394%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8943%7Celongation.for.123127-124102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123127-124102.Ar_EST_120301b_c8943%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7169%7Celongation.for.123192-124250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123192-124250.Ar_EST_120301b_rep_c7169%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5382%7Celongation.for.123276-124266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123276-124266.Ar_EST_120301b_rep_c5382%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4827%7Celongation.for.122343-123988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122343-123988.Ar_EST_120301b_rep_c4827%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16096%7Celongation.for.122363-123545.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122363-123545.Ar_EST_120301b_rep_c16096%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7219%7Ctranslation.for.122603-123858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122603-123858.Ar_EST_120301b_rep_c7219%7Ctranslation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7236%7Celongation.for.122883-124068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122883-124068.Ar_EST_120301b_rep_c7236%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19915%7Celongation.for.123442-124484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124484.Ar_EST_120301b_rep_c19915%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5477%7Celongation.for.122462-123491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122462-123491.Ar_EST_120301b_rep_c5477%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19970%7Celongation.for.123399-124493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123399-124493.Ar_EST_120301b_rep_c19970%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7042%7Ctranslation.for.122885-124003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122885-124003.Ar_EST_120301b_rep_c7042%7Ctranslation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6990%7Celongation.for.122895-124193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122895-124193.Ar_EST_120301b_rep_c6990%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7719%7Celongation.for.123277-124464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123277-124464.Ar_EST_120301b_rep_c7719%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5354%7Celongation.for.123442-124478.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.123442-124478.Ar_EST_120301b_rep_c5354%7Celongation.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:51 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:51 now processing 0
total clusters:51 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:51 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
total clusters:51 now processing 0
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:37 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:30 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:33 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:29 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:31 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/B3/98/AR_HYBRID_130113_TINTIN_EF2ON_C29//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C29/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:24 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.for.15642-17017.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.15642-17017.gi%7C284094796%7Cgb%7CEFC48429%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.for.16488-18115.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.16488-18115.gi%7C284082488%7Cgb%7CEFC36205%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.for.17992-20585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.17992-20585.gi%7C284087289%7Cgb%7CEFC40960%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.for.20546-21798.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.20546-21798.gi%7C284095823%7Cgb%7CEFC49452%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.for.23710-24791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.23710-24791.gi%7C284083472%7Cgb%7CEFC37175%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.for.33790-35729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.33790-35729.gi%7C284093407%7Cgb%7CEFC47045%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.for.43774-45818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.43774-45818.gi%7C284088682%7Cgb%7CEFC42344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.for.51653-52746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.51653-52746.gi%7C284090843%7Cgb%7CEFC44493%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.for.52255-54015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.52255-54015.gi%7C284085714%7Cgb%7CEFC39396%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.for.53275-57104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.53275-57104.gi%7C284089155%7Cgb%7CEFC42814%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.for.58507-59883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.58507-59883.gi%7C284086989%7Cgb%7CEFC40662%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.for.57951-59898.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.57951-59898.gi%7C284096971%7Cgb%7CEFC50598%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.for.60927-63829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.60927-63829.gi%7C284092099%7Cgb%7CEFC45742%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.for.67523-68880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.67523-68880.gi%7C284088599%7Cgb%7CEFC42262%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.for.89522-91023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.89522-91023.gi%7C284087974%7Cgb%7CEFC41640%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.101040-104240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.101040-104240.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.100661-104243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.100661-104243.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.for.103783-105176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103783-105176.gi%7C284080893%7Cgb%7CEFC35223%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.for.103573-108452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.103573-108452.gi%7C284095600%7Cgb%7CEFC49230%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.for.107194-108455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.107194-108455.gi%7C284089171%7Cgb%7CEFC42830%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.for.104227-105854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.104227-105854.gi%7C284081083%7Cgb%7CEFC35289%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117710-118968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.117710-118968.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284090531%7Cgb%7CEFC44182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284096603%7Cgb%7CEFC50231%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.for.122379-124477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122379-124477.gi%7C284084223%7Cgb%7CEFC37918%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C84105357%7Cgb%7CABC54650%2E1%7C.for.122424-124411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C29.122424-124411.gi%7C84105357%7Cgb%7CABC54650%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
total clusters:13 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:28 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:28 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.1215-2144.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4486-6372.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.7893-9451.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.10244-11989.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20696-21639.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.24069-24966.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.33430-34333.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.38041-40366.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.43973-46561.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.52454-53815.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.70728-74193.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.82281-83294.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.84401-85589.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.85725-88333.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.88493-89612.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.89634-90829.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.94500-98061.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.100857-104580.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.109065-109895.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.112325-113239.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.121491-122321.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.9079-10071.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.15841-17915.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.18361-19868.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.20097-20965.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.25760-26795.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.33989-35902.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43088-44075.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.49132-50236.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.51852-52546.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.53474-57216.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.58150-59698.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.61126-63629.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.90516-92633.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.92920-94335.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.103772-108252.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.116162-117121.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.117125-119712.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.119872-120770.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.122543-124287.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C30
Length: 54314
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:2 current j:0
j_size:2 current j:1
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C30.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:1 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig893%7Catp-binding.for.466-2557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.466-2557.120301b_Contig893%7Catp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10773%7Cabc.for.1870-3393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1870-3393.Ar_EST_120301b_c10773%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4126%7Chypothetical.for.2863-4751.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2863-4751.Ar_EST_120301b_rep_c4126%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6273%7Cprotein.for.3309-4727.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3309-4727.Ar_EST_120301b_rep_c6273%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15582%7C---NA---.for.3691-4637.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.3691-4637.Ar_EST_120301b_rep_c15582%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12926%7Ccchx.for.7094-8380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.7094-8380.Ar_EST_120301b_c12926%7Ccchx.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17763%7Cdna.for.8313-9673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.8313-9673.Ar_EST_120301b_c17763%7Cdna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4571%7Cspry.for.12651-15061.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12651-15061.Ar_EST_120301b_rep_c4571%7Cspry.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4942%7Cspry.for.12752-14477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.12752-14477.Ar_EST_120301b_rep_c4942%7Cspry.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19099%7Cnabrp89tf.for.15014-16243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.15014-16243.Ar_EST_120301b_rep_c19099%7Cnabrp89tf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6660%7Cbasal.for.30092-32127.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.30092-32127.Ar_EST_120301b_rep_c6660%7Cbasal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18311%7Cnuclear.for.32038-33497.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32038-33497.Ar_EST_120301b_c18311%7Cnuclear.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16390%7Catp-dependent.for.32819-34056.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.32819-34056.Ar_EST_120301b_c16390%7Catp-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11194%7Cpredicted.for.38415-39629.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.38415-39629.Ar_EST_120301b_c11194%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig234%7Chypothetical.for.39994-41974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39994-41974.120301b_Contig234%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10235%7Cprotein.for.39033-40812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39033-40812.Ar_EST_120301b_c10235%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2809%7Cprotein.for.42500-43683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.42500-43683.Ar_EST_120301b_c2809%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8390%7Clarv027tr.for.41927-43429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.41927-43429.Ar_EST_120301b_c8390%7Clarv027tr.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3793%7Ctpr.for.43881-45649.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.43881-45649.Ar_EST_120301b_c3793%7Ctpr.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10560%7C015b07_011507c.for.45034-46189.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.45034-46189.Ar_EST_120301b_c10560%7C015b07_011507c.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6594%7Ceukaryotic.for.46490-48119.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.46490-48119.Ar_EST_120301b_rep_c6594%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12692%7Cdna-binding.for.47435-48595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47435-48595.Ar_EST_120301b_c12692%7Cdna-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3672%7Ccold.for.47988-49845.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.47988-49845.Ar_EST_120301b_c3672%7Ccold.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:17 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:19 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:17 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:16 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:14 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:19 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:13 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:14 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:14 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/6E/EE/AR_HYBRID_130113_TINTIN_EF2ON_C30//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C30/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:17 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.for.742-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.742-3363.gi%7C284089041%7Cgb%7CEFC42701%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.1526-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1526-3375.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.1529-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3375.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.for.1784-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1784-3351.gi%7C284096824%7Cgb%7CEFC50451%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.2225-3375.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.2225-3375.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.1529-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3369.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.1598-3348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1598-3348.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.1520-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1520-3351.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.1535-3351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3351.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.1625-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1625-3363.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.1535-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3354.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.1547-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1547-3354.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.1529-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1529-3354.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.1535-3369.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1535-3369.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.1523-3363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1523-3363.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.1823-3354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.1823-3354.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.for.11072-13224.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.11072-13224.gi%7C284096783%7Cgb%7CEFC50410%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.for.24850-25808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.24850-25808.gi%7C284084703%7Cgb%7CEFC38393%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.for.37067-38139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.37067-38139.gi%7C284088237%7Cgb%7CEFC41902%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.for.36988-38142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.36988-38142.gi%7C284088261%7Cgb%7CEFC41926%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.for.39406-40370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C30.39406-40370.gi%7C284085648%7Cgb%7CEFC39330%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:2 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:2 now processing 0
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:2 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:2 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:11 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.941-4551.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.7293-8180.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8512-9473.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.11271-13024.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.30291-31960.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32237-33865.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39232-41792.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.42126-43343.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3881-4437.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.12850-14861.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.15213-16051.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44080-45989.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.46689-48014.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.48187-49645.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C33
Length: 138103
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C33.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:4 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10865%7Cn-terminal.for.2033-3700.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2033-3700.Ar_EST_120301b_c10865%7Cn-terminal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8426%7Cinositol.for.9692-11354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9692-11354.Ar_EST_120301b_c8426%7Cinositol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3091%7Cadipose-regulatory.for.13714-15674.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.13714-15674.Ar_EST_120301b_c3091%7Cadipose-regulatory.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14794%7Cfs962201.for.15139-16417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15139-16417.Ar_EST_120301b_c14794%7Cfs962201.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13215%7Cankyrin.for.15913-17182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.15913-17182.Ar_EST_120301b_c13215%7Cankyrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13475%7Ctransformer-sr.for.16806-18266.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.16806-18266.Ar_EST_120301b_rep_c13475%7Ctransformer-sr.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.18288-19294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.18288-19294.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c57%7Cdevelopmentally.for.17581-19507.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17581-19507.Ar_EST_120301b_c57%7Cdevelopmentally.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9143%7Ccatf.for.20396-21844.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.20396-21844.Ar_EST_120301b_rep_c9143%7Ccatf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18330%7Ccafy.for.21621-22865.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.21621-22865.Ar_EST_120301b_c18330%7Ccafy.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig221%7Cfp601087.for.22358-24862.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.22358-24862.120301b_Contig221%7Cfp601087.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c250%7Cv-myb.for.26371-29070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.26371-29070.Ar_EST_120301b_c250%7Cv-myb.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2206%7C280438371.for.27937-29275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27937-29275.Ar_EST_120301b_c2206%7C280438371.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17101%7Cche.for.28883-30363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28883-30363.Ar_EST_120301b_c17101%7Cche.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12076%7C---NA---.for.28960-30054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.28960-30054.Ar_EST_120301b_c12076%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.for.30851-32397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30851-32397.Ar_EST_120301b_rep_c5943%7Csyntaxin-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4805%7Csyntaxin.for.29991-32900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.29991-32900.Ar_EST_120301b_rep_c4805%7Csyntaxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9158%7Csec1-like.for.31452-32914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31452-32914.Ar_EST_120301b_c9158%7Csec1-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16864%7Csyntaxin.for.31408-32511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.31408-32511.Ar_EST_120301b_rep_c16864%7Csyntaxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16176%7Csyntaxin.for.30212-31558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.30212-31558.Ar_EST_120301b_rep_c16176%7Csyntaxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9532%7Cconserved.for.32392-33871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.32392-33871.Ar_EST_120301b_c9532%7Cconserved.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig434%7Ccell.for.35440-36926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.35440-36926.120301b_Contig434%7Ccell.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17121%7Cgpi.for.37557-39027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.37557-39027.Ar_EST_120301b_c17121%7Cgpi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1164%7Cbst1_canga.for.38294-40130.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.38294-40130.120301b_Contig1164%7Cbst1_canga.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12556%7Col2821f.for.40012-41356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40012-41356.Ar_EST_120301b_c12556%7Col2821f.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13810%7Cexosome.for.40762-41850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40762-41850.Ar_EST_120301b_c13810%7Cexosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20565%7Cexosome.for.40975-42051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40975-42051.Ar_EST_120301b_rep_c20565%7Cexosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1304%7Cexosome.for.42981-44309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.42981-44309.Ar_EST_120301b_c1304%7Cexosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20442%7Cexosome.for.43169-44389.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.43169-44389.Ar_EST_120301b_c20442%7Cexosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9428%7Cunconventional.for.45256-46575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.45256-46575.Ar_EST_120301b_c9428%7Cunconventional.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10763%7Cprotein.for.46158-47562.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46158-47562.Ar_EST_120301b_c10763%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8600%7Cprotein.for.47002-48304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.47002-48304.Ar_EST_120301b_c8600%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11770%7Cribonucleoside.for.49566-51011.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.49566-51011.Ar_EST_120301b_c11770%7Cribonucleoside.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19499%7Cribonucleoside.for.48600-50066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48600-50066.Ar_EST_120301b_c19499%7Cribonucleoside.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.for.48907-50444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48907-50444.Ar_EST_120301b_c8020%7Cribonucleoside-triphosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20281%7Ccation-transporting.for.52923-55212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52923-55212.Ar_EST_120301b_c20281%7Ccation-transporting.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17555%7Ccation-transporting.for.52392-53740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52392-53740.Ar_EST_120301b_c17555%7Ccation-transporting.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10588%7Cprobable.for.54509-55821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.54509-55821.Ar_EST_120301b_c10588%7Cprobable.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3266%7Cglycosyltransferase.for.59493-61361.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.59493-61361.Ar_EST_120301b_c3266%7Cglycosyltransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14384%7Cprotein.for.61027-62292.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61027-62292.Ar_EST_120301b_c14384%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.61337-62285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.61337-62285.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4234%7Chypothetical.for.63085-65145.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63085-65145.Ar_EST_120301b_rep_c4234%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.for.63703-64777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63703-64777.Ar_EST_120301b_rep_c6835%7Cleishmanolysin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17669%7Chypothetical.for.63308-64533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.63308-64533.Ar_EST_120301b_rep_c17669%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6093%7C---NA---.for.64020-65144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.64020-65144.Ar_EST_120301b_rep_c6093%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11320%7Cpentatricopeptide.for.65970-67270.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.65970-67270.Ar_EST_120301b_c11320%7Cpentatricopeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c681%7Chypothetical.for.72906-74211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.72906-74211.Ar_EST_120301b_c681%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12804%7Ctype.for.75141-76563.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.75141-76563.Ar_EST_120301b_c12804%7Ctype.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6513%7Cmalate.for.80519-82412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80519-82412.Ar_EST_120301b_rep_c6513%7Cmalate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6815%7Cmalate.for.80492-82211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.80492-82211.Ar_EST_120301b_rep_c6815%7Cmalate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3066%7Cmalate.for.79932-81736.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79932-81736.Ar_EST_120301b_c3066%7Cmalate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16333%7Ctransport.for.82370-83712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.82370-83712.Ar_EST_120301b_c16333%7Ctransport.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10746%7Cbeige.for.85163-86860.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.85163-86860.Ar_EST_120301b_c10746%7Cbeige.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14032%7Ccaxx.for.86480-87826.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.86480-87826.Ar_EST_120301b_c14032%7Ccaxx.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12871%7Cpredicted.for.88548-89839.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.88548-89839.Ar_EST_120301b_c12871%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15711%7Cbeach.for.89286-90628.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.89286-90628.Ar_EST_120301b_c15711%7Cbeach.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13277%7Cpredicted.for.90419-92191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.90419-92191.Ar_EST_120301b_c13277%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15589%7Cprotein.for.102548-103609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102548-103609.Ar_EST_120301b_c15589%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16197%7Cprotein.for.102885-104227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102885-104227.Ar_EST_120301b_c16197%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c22%7Caminotransferase.for.108878-111199.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.108878-111199.Ar_EST_120301b_c22%7Caminotransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15277%7Cprotein.for.110958-112022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110958-112022.Ar_EST_120301b_c15277%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5938%7Carginine.for.112004-113875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.112004-113875.Ar_EST_120301b_rep_c5938%7Carginine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12333%7Cfy828944.for.115780-117116.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115780-117116.Ar_EST_120301b_c12333%7Cfy828944.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14482%7Cprotein.for.116951-118425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116951-118425.Ar_EST_120301b_c14482%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1997%7Cimpact.for.116977-118066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.116977-118066.Ar_EST_120301b_c1997%7Cimpact.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20372%7C60s.for.118493-119653.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119653.Ar_EST_120301b_rep_c20372%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20437%7C60s.for.118509-119655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118509-119655.Ar_EST_120301b_rep_c20437%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18561%7C60s.for.118493-119665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118493-119665.Ar_EST_120301b_rep_c18561%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1306%7Cbay.for.119271-120567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.119271-120567.Ar_EST_120301b_c1306%7Cbay.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11551%7Catp-binding.for.122951-124177.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122951-124177.Ar_EST_120301b_c11551%7Catp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2796%7Catp-binding.for.122280-123842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.122280-123842.Ar_EST_120301b_c2796%7Catp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig377%7Csenescence.for.121284-123104.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.121284-123104.120301b_Contig377%7Csenescence.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2715%7Catp-binding.for.123362-125173.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.123362-125173.Ar_EST_120301b_c2715%7Catp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15601%7C3-beta.for.124944-126129.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.124944-126129.Ar_EST_120301b_c15601%7C3-beta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1184%7C3-beta.for.125166-126821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.125166-126821.Ar_EST_120301b_c1184%7C3-beta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1082%7Csyntaxin.for.126182-127650.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.126182-127650.120301b_Contig1082%7Csyntaxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14083%7Chypothetical.for.130889-132167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130889-132167.Ar_EST_120301b_c14083%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2116%7Chat.for.130681-132010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.130681-132010.Ar_EST_120301b_c2116%7Chat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12752%7Cbg01.for.134379-135767.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.134379-135767.Ar_EST_120301b_c12752%7Cbg01.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1133%7Cbg04-.for.136477-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136477-137733.Ar_EST_120301b_c1133%7Cbg04-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3822%7Cpiggybac.for.136920-138103.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136920-138103.Ar_EST_120301b_c3822%7Cpiggybac.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c422%7Cmeloidogyne.for.135457-137120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135457-137120.Ar_EST_120301b_c422%7Cmeloidogyne.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19525%7Caj677057.for.136522-137693.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136522-137693.Ar_EST_120301b_c19525%7Caj677057.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3325%7Cmeloidogyne.for.135463-137087.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.135463-137087.Ar_EST_120301b_c3325%7Cmeloidogyne.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8009%7Cbg04-.for.136027-137733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.136027-137733.Ar_EST_120301b_c8009%7Cbg04-.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:55 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:55 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:55 now processing 0
total clusters:55 now processing 0
...processing 0 of 2
...processing 1 of 2
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:29 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:58 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:52 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:51 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/DC/92/AR_HYBRID_130113_TINTIN_EF2ON_C33//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C33/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:33 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.for.2058-3448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.2058-3448.gi%7C284091245%7Cgb%7CEFC44893%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.for.9726-11381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.9726-11381.gi%7C284088206%7Cgb%7CEFC41871%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.for.11879-13257.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.11879-13257.gi%7C284090769%7Cgb%7CEFC44419%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.for.17599-19499.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19499.gi%7C284092544%7Cgb%7CEFC46186%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.for.17599-19490.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.17599-19490.gi%7C284085562%7Cgb%7CEFC39245%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.for.27176-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28278.gi%7C284092809%7Cgb%7CEFC46449%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.for.27173-28341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27173-28341.gi%7C284088713%7Cgb%7CEFC42375%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.for.27176-28269.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.27176-28269.gi%7C284097108%7Cgb%7CEFC50735%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.for.36570-37856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.36570-37856.gi%7C284096122%7Cgb%7CEFC49751%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.for.40766-44415.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.40766-44415.gi%7C284097049%7Cgb%7CEFC50676%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.for.46933-48362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.46933-48362.gi%7C284082919%7Cgb%7CEFC36629%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.for.48607-51519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.48607-51519.gi%7C284092761%7Cgb%7CEFC46402%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.for.52038-56344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.52038-56344.gi%7C284096668%7Cgb%7CEFC50295%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.for.68085-69508.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.68085-69508.gi%7C284090381%7Cgb%7CEFC44033%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.for.79484-80433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.79484-80433.gi%7C284089187%7Cgb%7CEFC42846%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.for.83220-85117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.83220-85117.gi%7C284088520%7Cgb%7CEFC42183%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.for.102484-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102484-104225.gi%7C284096554%7Cgb%7CEFC50182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.for.102814-104225.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.102814-104225.gi%7C284091744%7Cgb%7CEFC45389%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.for.110724-112340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.110724-112340.gi%7C284089709%7Cgb%7CEFC43365%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.for.113245-114583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.113245-114583.gi%7C284094401%7Cgb%7CEFC48035%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.115441-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116531.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.115501-116582.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115501-116582.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.115498-116531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115498-116531.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.115444-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115444-116525.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.115492-116870.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115492-116870.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.115504-116570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115504-116570.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.for.115438-116525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115438-116525.gi%7C284081233%7Cgb%7CEFC35348%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.115480-116636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115480-116636.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.115441-116543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115441-116543.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.115522-116534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.115522-116534.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.for.118498-119501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.118498-119501.gi%7C284089974%7Cgb%7CEFC43628%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.for.127450-128726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C33.127450-128726.gi%7C284091629%7Cgb%7CEFC45275%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:36 now processing 0
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:36 now processing 0
total clusters:36 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13913-15501.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17798-19299.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26570-28870.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.31607-32320.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36769-37656.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.37756-39930.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.40211-41156.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45455-48162.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.63284-64945.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.68284-69308.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.73105-74011.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.75340-76365.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.110923-112140.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.112203-114443.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.118692-119467.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.121483-122904.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.125143-126621.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.135656-137638.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.2232-3500.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.9889-11184.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.15338-16982.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.17002-18066.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.20595-24662.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.28129-29075.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.29082-30163.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.30190-32714.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.35639-36729.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.40965-44215.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.48799-51319.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.52237-56144.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.59692-61161.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.61226-62092.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.66169-67070.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.80131-82212.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.82569-86660.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.86679-91991.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.102683-104153.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.109075-111013.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.115640-116916.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.117143-118225.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.119470-120424.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.122479-124973.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.126381-127450.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.127649-128526.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.130880-131967.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.134516-135567.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.136640-137535.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C34
Length: 50682
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:1 current j:0
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C34.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:3 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11308%7C---NA---.for.1103-2190.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1103-2190.Ar_EST_120301b_rep_c11308%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1153%7Cswim.for.26-2179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.26-2179.120301b_Contig1153%7Cswim.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19191%7C---NA---.for.1562-3123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1562-3123.Ar_EST_120301b_c19191%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5150%7C---NA---.for.1214-2476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1214-2476.Ar_EST_120301b_rep_c5150%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c231%7Cfamily.for.1007-2594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1007-2594.Ar_EST_120301b_c231%7Cfamily.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9632%7Cprotein.for.1527-3329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.1527-3329.Ar_EST_120301b_rep_c9632%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4785%7Cheat.for.3667-6175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3667-6175.Ar_EST_120301b_rep_c4785%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c25%7Cheat.for.3677-6842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3677-6842.Ar_EST_120301b_c25%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.for.4974-6319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.4974-6319.Ar_EST_120301b_rep_c14633%7Clipophosphoglycan.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10561%7Cphosphatidic.for.6674-8012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.6674-8012.Ar_EST_120301b_c10561%7Cphosphatidic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.for.9193-10445.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.9193-10445.Ar_EST_120301b_c12466%7Cmaruca_01_m20_smart5-seq1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig557%7Clyc-8-c11.for.12929-14444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12929-14444.120301b_Contig557%7Clyc-8-c11.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6187%7Chypothetical.for.12930-14470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.12930-14470.Ar_EST_120301b_rep_c6187%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1369%7Cphospholipase.for.15235-18239.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15235-18239.120301b_Contig1369%7Cphospholipase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16238%7Cactin-related.for.19436-20738.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19436-20738.Ar_EST_120301b_rep_c16238%7Cactin-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6211%7Cactin-related.for.18930-20753.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18930-20753.Ar_EST_120301b_rep_c6211%7Cactin-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig460%7Cactin-related.for.18789-20779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18789-20779.120301b_Contig460%7Cactin-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9473%7Ccre-arx-3.for.19027-20240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.19027-20240.Ar_EST_120301b_rep_c9473%7Ccre-arx-3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9479%7Cswi2.for.20409-21857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20409-21857.Ar_EST_120301b_c9479%7Cswi2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3575%7Cswi.for.21456-23264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.21456-23264.Ar_EST_120301b_c3575%7Cswi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8684%7Cmeloidogyne.for.23339-24828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.23339-24828.Ar_EST_120301b_c8684%7Cmeloidogyne.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13859%7Cpas.for.24923-26220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.24923-26220.Ar_EST_120301b_c13859%7Cpas.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3752%7Cprotein.for.28758-30821.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.28758-30821.Ar_EST_120301b_c3752%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18512%7Catp-dependent.for.29537-30850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.29537-30850.Ar_EST_120301b_c18512%7Catp-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c92%7Cproprotein.for.30412-33324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30412-33324.Ar_EST_120301b_c92%7Cproprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig148%7Cdomain-containing.for.33636-35938.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.33636-35938.120301b_Contig148%7Cdomain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1026%7Ccarbohydrate.for.38938-42088.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.38938-42088.120301b_Contig1026%7Ccarbohydrate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18266%7Ccbpn%3A.for.42317-43586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.42317-43586.Ar_EST_120301b_c18266%7Ccbpn%3A.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16104%7Coxidoreductase.for.48145-49395.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48145-49395.Ar_EST_120301b_c16104%7Coxidoreductase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18279%7Coxidoreductase.for.48626-49955.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48626-49955.Ar_EST_120301b_c18279%7Coxidoreductase.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:13 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:6 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:13 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:8 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:12 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:9 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:12 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:12 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:8 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/78/28/AR_HYBRID_130113_TINTIN_EF2ON_C34//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C34/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:8 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.for.2823-4207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.2823-4207.gi%7C284093550%7Cgb%7CEFC47187%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.for.3811-6713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6713.gi%7C284086161%7Cgb%7CEFC39839%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.for.3718-6716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3718-6716.gi%7C284096519%7Cgb%7CEFC50147%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.for.3811-6683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3811-6683.gi%7C284096247%7Cgb%7CEFC49875%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.for.3826-6656.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.3826-6656.gi%7C25986841%7Cgb%7CAAM93756%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.for.15058-17428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15058-17428.gi%7C284091896%7Cgb%7CEFC45540%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.for.15070-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15070-17413.gi%7C284086563%7Cgb%7CEFC40239%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.for.15061-16741.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.15061-16741.gi%7C284083916%7Cgb%7CEFC37614%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.for.16725-19001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.16725-19001.gi%7C284083373%7Cgb%7CEFC37077%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.for.18929-20742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.18929-20742.gi%7C284082917%7Cgb%7CEFC36627%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.for.20691-23059.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20691-23059.gi%7C284096936%7Cgb%7CEFC50563%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.for.20697-23032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20697-23032.gi%7C284093262%7Cgb%7CEFC46901%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.for.20565-23233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20565-23233.gi%7C284085362%7Cgb%7CEFC39046%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.for.20688-23206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20688-23206.gi%7C284093648%7Cgb%7CEFC47285%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.for.20715-23062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20715-23062.gi%7C284095906%7Cgb%7CEFC49535%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.for.20487-23215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.20487-23215.gi%7C284087958%7Cgb%7CEFC41624%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.for.30726-32926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.30726-32926.gi%7C284096449%7Cgb%7CEFC50077%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.for.45290-46981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45290-46981.gi%7C284089770%7Cgb%7CEFC43425%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.for.45308-46900.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.45308-46900.gi%7C284093999%7Cgb%7CEFC47635%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.for.48179-50148.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C34.48179-50148.gi%7C284084374%7Cgb%7CEFC38067%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:7 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:7 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:6 now processing 0
total clusters:6 now processing 0
total clusters:6 now processing 0
total clusters:6 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:6 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:6 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.13101-14294.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.15434-18039.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.19128-20553.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.20608-23064.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.23538-24628.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.25122-26022.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.30611-33124.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.33835-35738.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.39137-41888.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.225-2929.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.3022-6516.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.6873-7812.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.9392-10249.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.15257-17234.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.29732-30650.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.42516-43386.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.48344-49948.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C35
Length: 58974
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:5 current j:0
j_size:5 current j:1
j_size:5 current j:2
j_size:5 current j:3
j_size:5 current j:4
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C35.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:0 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:2 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8607%7Cgtp-binding.for.2-1886.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2-1886.Ar_EST_120301b_c8607%7Cgtp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6065%7Csubtilisin-like.for.2365-4444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.2365-4444.Ar_EST_120301b_rep_c6065%7Csubtilisin-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1399%7Cn-ethylmaleimide.for.5160-6458.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5160-6458.Ar_EST_120301b_c1399%7Cn-ethylmaleimide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11943%7Ccytochrome.for.7916-9267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7916-9267.Ar_EST_120301b_c11943%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9590%7Ccytochrome.for.8478-9742.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.8478-9742.Ar_EST_120301b_c9590%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1055%7Cregulator.for.12264-13963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.12264-13963.120301b_Contig1055%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8207%7Ccytochrome.for.14989-17301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14989-17301.Ar_EST_120301b_c8207%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16878%7Chypothetical.for.18560-19916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.18560-19916.Ar_EST_120301b_c16878%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12427%7Ctelomerase.for.22706-24114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.22706-24114.Ar_EST_120301b_c12427%7Ctelomerase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.28505-30052.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.28505-30052.Ar_EST_120301b_c11557%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16891%7Czinc.for.29355-30729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.29355-30729.Ar_EST_120301b_c16891%7Czinc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.33103-34283.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.33103-34283.Ar_EST_120301b_c14460%7Cspastic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13834%7Cprotein.for.36324-37549.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.36324-37549.Ar_EST_120301b_c13834%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1421%7Ctestis.for.43982-45419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43982-45419.Ar_EST_120301b_c1421%7Ctestis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16539%7C---NA---.for.46011-47317.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.46011-47317.Ar_EST_120301b_c16539%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11932%7Ce3.for.47499-48777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.47499-48777.Ar_EST_120301b_c11932%7Ce3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12237%7Ctplate.for.52411-53828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.52411-53828.Ar_EST_120301b_c12237%7Ctplate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1748%7Cpredicted.for.54228-55364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.54228-55364.Ar_EST_120301b_c1748%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c112%7Cn-acyl.for.55635-57533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55635-57533.Ar_EST_120301b_c112%7Cn-acyl.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:52 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:39 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:61 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:47 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:51 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:32 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:44 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/7E/13/AR_HYBRID_130113_TINTIN_EF2ON_C35//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C35/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:50 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.for.1-1806.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.1-1806.gi%7C284088120%7Cgb%7CEFC41785%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.for.5213-6594.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.5213-6594.gi%7C284081631%7Cgb%7CEFC35564%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.for.7830-9733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.7830-9733.gi%7C284089466%7Cgb%7CEFC43123%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.for.13318-14336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13318-14336.gi%7C284083307%7Cgb%7CEFC37012%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.for.13747-15125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13747-15125.gi%7C284090963%7Cgb%7CEFC44612%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.14110-15161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14110-15161.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.for.13768-14993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-14993.gi%7C284096471%7Cgb%7CEFC50099%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.for.13732-15062.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13732-15062.gi%7C284094163%7Cgb%7CEFC47798%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.for.13768-15032.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13768-15032.gi%7C284091693%7Cgb%7CEFC45338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.for.13825-15098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.13825-15098.gi%7C284095876%7Cgb%7CEFC49505%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.for.14101-15107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.14101-15107.gi%7C284093839%7Cgb%7CEFC47475%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.for.15898-17326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15898-17326.gi%7C284094409%7Cgb%7CEFC48043%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.for.15799-17275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.15799-17275.gi%7C284095125%7Cgb%7CEFC48757%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.for.40888-42371.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42371.gi%7C284080983%7Cgb%7CEFC35253%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.for.40888-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42344.gi%7C284083648%7Cgb%7CEFC37349%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.for.41095-42344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41095-42344.gi%7C284084263%7Cgb%7CEFC37957%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.for.41068-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41068-42347.gi%7C284096419%7Cgb%7CEFC50047%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.for.41398-42347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41398-42347.gi%7C284087065%7Cgb%7CEFC40737%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.for.40888-42359.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42359.gi%7C284090976%7Cgb%7CEFC44625%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.for.40888-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42131.gi%7C284081047%7Cgb%7CEFC35275%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.for.40888-42368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.40888-42368.gi%7C284082158%7Cgb%7CEFC35924%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.for.41038-42356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41038-42356.gi%7C284094671%7Cgb%7CEFC48304%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.for.41263-42338.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.41263-42338.gi%7C284086669%7Cgb%7CEFC40344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.for.43934-46857.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.43934-46857.gi%7C284096635%7Cgb%7CEFC50262%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.for.55969-57425.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C35.55969-57425.gi%7C284083461%7Cgb%7CEFC37164%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:7 now processing 0
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:7 now processing 0
total clusters:7 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:7 now processing 0
total clusters:7 now processing 0
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:4 now processing 0
total clusters:4 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:4 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:4 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:2 now processing 0
total clusters:2 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.201-1686.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.5359-6394.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8029-9542.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.12463-14925.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.15188-17126.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.18743-19716.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.22905-23923.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.28704-30529.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.33302-37349.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.41087-42171.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.44133-47117.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.52610-53628.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.55834-57333.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C36
Length: 164851
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:4 current j:0
j_size:4 current j:1
j_size:4 current j:2
j_size:4 current j:3
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C36.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:8 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:10 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:0 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig681%7Cpredicted.for.1612-3428.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1612-3428.120301b_Contig681%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig244%7Cpeptidase.for.1-2453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.1-2453.120301b_Contig244%7Cpeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10191%7Cprotein.for.7049-8512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7049-8512.Ar_EST_120301b_c10191%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16233%7Cpre-mrna-processing.for.7813-8914.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.7813-8914.Ar_EST_120301b_c16233%7Cpre-mrna-processing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c213%7C14-3-3.for.10760-12363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.10760-12363.Ar_EST_120301b_c213%7C14-3-3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16140%7Culva.for.11130-12229.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.11130-12229.Ar_EST_120301b_rep_c16140%7Culva.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5489%7Clipoxygenase.for.8318-9929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8318-9929.Ar_EST_120301b_rep_c5489%7Clipoxygenase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig419%7Clipoxygenase.for.8371-10887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.8371-10887.120301b_Contig419%7Clipoxygenase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c582%7Cprotein.for.9744-11960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.9744-11960.Ar_EST_120301b_c582%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15523%7Chypothetical.for.12770-14142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.12770-14142.Ar_EST_120301b_c15523%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17561%7Cexported.for.13626-14946.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13626-14946.Ar_EST_120301b_c17561%7Cexported.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3144%7Cexported.for.13714-15185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.13714-15185.Ar_EST_120301b_c3144%7Cexported.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4715%7Cpyruvate.for.15987-18058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15987-18058.Ar_EST_120301b_rep_c4715%7Cpyruvate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8703%7Cadenylate.for.18415-20385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.18415-20385.Ar_EST_120301b_c8703%7Cadenylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14309%7Cpshb008xj07f.for.19602-20811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.19602-20811.Ar_EST_120301b_c14309%7Cpshb008xj07f.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2673%7Chypothetical.for.25046-26505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25046-26505.Ar_EST_120301b_c2673%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19713%7Cfigitidae.for.25465-26531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25465-26531.Ar_EST_120301b_c19713%7Cfigitidae.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10941%7Cunnamed.for.25267-26580.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.25267-26580.Ar_EST_120301b_c10941%7Cunnamed.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig952%7Calkaline.for.27039-28602.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.27039-28602.120301b_Contig952%7Calkaline.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1354%7Cvacuolar.for.29723-31176.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.29723-31176.Ar_EST_120301b_c1354%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2160%7Cheat.for.31661-33512.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31661-33512.Ar_EST_120301b_c2160%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig72%7Cheat.for.32921-34988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.32921-34988.120301b_Contig72%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14835%7Cheat.for.33292-34215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.33292-34215.Ar_EST_120301b_c14835%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.for.37444-38809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.37444-38809.Ar_EST_120301b_c11328%7Cca00-xx-cs1-019-e03-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14706%7Capoptosis.for.38105-39109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.38105-39109.Ar_EST_120301b_c14706%7Capoptosis.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13920%7Cnormalized.for.42436-43717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.42436-43717.Ar_EST_120301b_c13920%7Cnormalized.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11389%7C---NA---.for.43257-45228.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.43257-45228.Ar_EST_120301b_c11389%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8045%7Chypothetical.for.44921-46139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.44921-46139.Ar_EST_120301b_c8045%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c696%7Cmethyltransferase.for.45942-47448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.45942-47448.Ar_EST_120301b_c696%7Cmethyltransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c479%7Cras.for.47229-48708.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47229-48708.Ar_EST_120301b_c479%7Cras.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10880%7Ccagn.for.47999-49358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47999-49358.Ar_EST_120301b_c10880%7Ccagn.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11023%7Cwoods.for.49911-51464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.49911-51464.Ar_EST_120301b_c11023%7Cwoods.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11544%7Cmorn.for.51230-52774.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51230-52774.Ar_EST_120301b_c11544%7Cmorn.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14618%7Cfp661852.for.52446-53539.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52446-53539.Ar_EST_120301b_rep_c14618%7Cfp661852.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6769%7Cfp779243.for.52203-53852.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.52203-53852.Ar_EST_120301b_rep_c6769%7Cfp779243.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1926%7Cglyoxylate.for.53381-54954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53381-54954.Ar_EST_120301b_c1926%7Cglyoxylate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19845%7Cmajor.for.55613-58074.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55613-58074.Ar_EST_120301b_c19845%7Cmajor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6910%7Cwd-40.for.57551-59082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.57551-59082.Ar_EST_120301b_rep_c6910%7Cwd-40.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16202%7Cmkiaa0840.for.60733-62118.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.60733-62118.Ar_EST_120301b_c16202%7Cmkiaa0840.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1072%7Czinc.for.61536-63167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.61536-63167.Ar_EST_120301b_c1072%7Czinc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7880%7Cprotein.for.64297-66068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.64297-66068.Ar_EST_120301b_c7880%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19724%7Ciris.for.63956-65289.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.63956-65289.Ar_EST_120301b_c19724%7Ciris.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18072%7C3-carboxymuconate.for.71894-73072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.71894-73072.Ar_EST_120301b_c18072%7C3-carboxymuconate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18444%7C60s.for.80598-81815.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.80598-81815.Ar_EST_120301b_c18444%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig241%7Cpredicted.for.82554-84883.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82554-84883.120301b_Contig241%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17780%7Cssalplnb505110.for.82703-83944.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.82703-83944.Ar_EST_120301b_c17780%7Cssalplnb505110.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15355%7C---NA---.for.89954-91419.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.89954-91419.Ar_EST_120301b_c15355%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17615%7Cdk939318.for.91151-92547.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.91151-92547.Ar_EST_120301b_c17615%7Cdk939318.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1920%7Cloc100125160.for.93005-94506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93005-94506.Ar_EST_120301b_c1920%7Cloc100125160.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c326%7Cpeptide-n.for.94452-96001.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.94452-96001.Ar_EST_120301b_c326%7Cpeptide-n.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1414%7Cpredicted.for.96429-97878.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.96429-97878.Ar_EST_120301b_c1414%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16511%7Cprotein.for.100071-101309.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100071-101309.Ar_EST_120301b_c16511%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17541%7Csec14l1.for.100091-101441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100091-101441.Ar_EST_120301b_c17541%7Csec14l1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8021%7Cguanine.for.100862-102783.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100862-102783.Ar_EST_120301b_c8021%7Cguanine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14826%7Cphenazine.for.112041-113316.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112041-113316.Ar_EST_120301b_c14826%7Cphenazine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8891%7Cmacro.for.112626-114075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112626-114075.Ar_EST_120301b_c8891%7Cmacro.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9485%7Cer-golgi.for.113492-115258.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.113492-115258.Ar_EST_120301b_c9485%7Cer-golgi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9610%7Cpeptide.for.115387-116807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115387-116807.Ar_EST_120301b_c9610%7Cpeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8797%7Cpseudouridine.for.116507-118099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116507-118099.Ar_EST_120301b_c8797%7Cpseudouridine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4203%7Cmitogen-activated.for.117483-119541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117483-119541.Ar_EST_120301b_rep_c4203%7Cmitogen-activated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig609%7Cmitogen-activated.for.118248-119740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118248-119740.120301b_Contig609%7Cmitogen-activated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20137%7Cchromatin.for.121160-123912.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.121160-123912.Ar_EST_120301b_c20137%7Cchromatin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7867%7Cpredicted.for.123600-125572.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123600-125572.Ar_EST_120301b_c7867%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18812%7Cmetal.for.123289-124801.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.123289-124801.Ar_EST_120301b_c18812%7Cmetal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2196%7Cchromosome.for.124897-126496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.124897-126496.Ar_EST_120301b_c2196%7Cchromosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13274%7Cribose-5-phosphate.for.127761-129064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127761-129064.Ar_EST_120301b_c13274%7Cribose-5-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12734%7Cribose-5-phosphate.for.127554-129000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127554-129000.Ar_EST_120301b_c12734%7Cribose-5-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c862%7Cgtp-binding.for.129545-130880.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129545-130880.Ar_EST_120301b_c862%7Cgtp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12075%7Cras-related.for.129414-130749.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129414-130749.Ar_EST_120301b_c12075%7Cras-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12517%7Cks20025f06.for.130671-131613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130671-131613.Ar_EST_120301b_c12517%7Cks20025f06.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15951%7Csplicing.for.130942-132303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130942-132303.Ar_EST_120301b_c15951%7Csplicing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14460%7Cspastic.for.140331-141326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.140331-141326.Ar_EST_120301b_c14460%7Cspastic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11557%7Cprotein.for.144408-145922.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.144408-145922.Ar_EST_120301b_c11557%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16858%7Csensor.for.147185-148571.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.147185-148571.Ar_EST_120301b_c16858%7Csensor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7923%7Cprotein.for.150560-152432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150560-152432.Ar_EST_120301b_c7923%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2557%7Ccentromere.for.150215-152133.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150215-152133.Ar_EST_120301b_c2557%7Ccentromere.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.for.159428-160814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.159428-160814.Ar_EST_120301b_c16845%7Ccglsc1ng-t3-006_k21_17apr2009_085.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2868%7Clongevity.for.162089-164040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.162089-164040.Ar_EST_120301b_c2868%7Clongevity.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
total clusters:57 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:57 now processing 0
total clusters:57 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:33 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:29 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:53 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:46 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:46 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:58 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AC/DD/AR_HYBRID_130113_TINTIN_EF2ON_C36//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C36/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:32 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.for.2846-5161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.2846-5161.gi%7C284090638%7Cgb%7CEFC44289%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.for.6522-8824.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.6522-8824.gi%7C284092635%7Cgb%7CEFC46276%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.for.15979-17888.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.15979-17888.gi%7C284087213%7Cgb%7CEFC40884%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.17488-18548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.17488-18548.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.for.23058-25469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.23058-25469.gi%7C284097085%7Cgb%7CEFC50712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.for.31826-34626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31826-34626.gi%7C284090588%7Cgb%7CEFC44239%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.for.31688-35097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.31688-35097.gi%7C284091692%7Cgb%7CEFC45337%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.for.47338-48695.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47338-48695.gi%7C284096964%7Cgb%7CEFC50591%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.for.47227-48713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.47227-48713.gi%7C284092317%7Cgb%7CEFC45959%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.for.51188-52570.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.51188-52570.gi%7C284094675%7Cgb%7CEFC48308%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.for.53430-54985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.53430-54985.gi%7C284094767%7Cgb%7CEFC48400%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.for.55683-57985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-57985.gi%7C284090385%7Cgb%7CEFC44037%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.for.55683-58012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.55683-58012.gi%7C284087326%7Cgb%7CEFC40996%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.for.58456-60867.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58456-60867.gi%7C284089393%7Cgb%7CEFC43051%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.for.58606-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.58606-60831.gi%7C284092889%7Cgb%7CEFC46529%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.for.93791-96386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.93791-96386.gi%7C284093346%7Cgb%7CEFC46984%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.for.98827-100405.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.98827-100405.gi%7C284091412%7Cgb%7CEFC45059%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.100758-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100758-102737.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.for.101315-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.101315-102716.gi%7C284084774%7Cgb%7CEFC38463%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.100785-102737.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102737.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.100776-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100776-102716.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.for.100977-102713.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100977-102713.gi%7C284090770%7Cgb%7CEFC44420%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.100770-102716.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100770-102716.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.100941-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100941-101983.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.100785-102746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100785-102746.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.100995-101983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100995-101983.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.100782-102776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100782-102776.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.100851-102731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.100851-102731.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.for.111621-113308.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.111621-113308.gi%7C284084944%7Cgb%7CEFC38632%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.for.112682-114013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112682-114013.gi%7C284080802%7Cgb%7CEFC35193%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.for.112845-113989.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.112845-113989.gi%7C284094932%7Cgb%7CEFC48564%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.for.115312-117053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.115312-117053.gi%7C284087397%7Cgb%7CEFC41067%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.for.116338-118126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.116338-118126.gi%7C284096928%7Cgb%7CEFC50555%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.118317-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118317-119683.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.for.118145-119079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118145-119079.gi%7C284091587%7Cgb%7CEFC45233%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.117849-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119659.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.117846-119242.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119242.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.117685-119707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117685-119707.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.117739-119683.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119683.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.117712-119016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117712-119016.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.117739-119659.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117739-119659.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.for.117858-119587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117858-119587.gi%7C284090237%7Cgb%7CEFC43890%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.118121-119272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118121-119272.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.for.118154-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118154-119554.gi%7C284088224%7Cgb%7CEFC41889%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.for.118118-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118118-119551.gi%7C284090447%7Cgb%7CEFC44099%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.117849-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117849-119671.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.118106-119551.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119551.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.for.118139-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118139-119554.gi%7C284088374%7Cgb%7CEFC42038%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.118022-119575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118022-119575.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.for.118371-119557.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118371-119557.gi%7C284086311%7Cgb%7CEFC39988%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.for.117852-119542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117852-119542.gi%7C284084616%7Cgb%7CEFC38307%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.118590-119671.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118590-119671.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.117846-119668.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.117846-119668.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.for.118157-119560.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118157-119560.gi%7C284090070%7Cgb%7CEFC43724%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.118106-119281.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.118106-119281.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.for.119366-121330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.119366-121330.gi%7C284097055%7Cgb%7CEFC50682%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.for.127290-128284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.127290-128284.gi%7C284088135%7Cgb%7CEFC41800%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.for.129550-130820.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129550-130820.gi%7C284092330%7Cgb%7CEFC45972%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.for.129436-130832.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129436-130832.gi%7C284087489%7Cgb%7CEFC41158%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.for.129559-130835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130835.gi%7C284086692%7Cgb%7CEFC40367%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.for.129559-130811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130811.gi%7C284093218%7Cgb%7CEFC46857%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.for.129424-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129424-130829.gi%7C284095576%7Cgb%7CEFC49206%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.for.129547-130676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129547-130676.gi%7C284080992%7Cgb%7CEFC35256%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.129559-130829.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129559-130829.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.for.129670-130817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.129670-130817.gi%7C284092994%7Cgb%7CEFC46634%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.for.130259-132474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.130259-132474.gi%7C284093669%7Cgb%7CEFC47306%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.for.132434-133461.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.132434-133461.gi%7C284090027%7Cgb%7CEFC43681%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.for.150502-152561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.150502-152561.gi%7C284089533%7Cgb%7CEFC43190%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.for.153131-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153131-154812.gi%7C284088991%7Cgb%7CEFC42651%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.for.153125-154812.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.153125-154812.gi%7C284087025%7Cgb%7CEFC40697%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.for.157597-158705.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C36.157597-158705.gi%7C284096724%7Cgb%7CEFC50351%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:17 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:17 now processing 0
total clusters:17 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:17 now processing 0
total clusters:17 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
...processing 0 of 2
...processing 1 of 2
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:26 now processing 0
total clusters:26 now processing 0
total clusters:26 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
...processing 0 of 2
...processing 1 of 2
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:37 now processing 0
total clusters:37 now processing 0
total clusters:37 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-3228.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.12969-14985.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.23257-26383.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.50110-51272.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.51429-54785.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.57750-60667.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.60932-62967.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.82753-84683.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.90153-92347.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.100270-101241.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.115511-119540.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.119565-121130.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.121359-126296.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.127489-128084.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.153119-154724.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.3045-4961.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.6721-10687.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.16178-18351.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.18609-20623.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.27238-28402.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.31855-34897.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.37643-39024.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.42626-43522.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.46141-47248.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.47426-49166.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.55882-57812.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.64155-65868.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.72064-72872.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.80797-81615.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.93204-96186.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96628-97678.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99026-100205.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.100957-102583.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.111820-115058.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.127753-128864.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.129613-132274.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.140372-141147.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.144590-145738.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.147384-148390.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.150414-152436.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.157796-158505.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.159627-160614.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.162288-163840.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C37
Length: 131203
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:7 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:3 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:5 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:6 current j:0
j_size:6 current j:1
j_size:6 current j:2
j_size:6 current j:3
j_size:6 current j:4
j_size:6 current j:5
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C37.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:2 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.for.491-1869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.491-1869.Ar_EST_120301b_c12507%7Ccs00-c2-003-048-e05-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.for.4721-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4721-5746.Ar_EST_120301b_rep_c14016%7C000601kaaa001072ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.for.4632-5746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4632-5746.Ar_EST_120301b_rep_c6435%7C000601kaaa001072ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.for.4067-5991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.4067-5991.Ar_EST_120301b_rep_c4185%7C000601kaaa001072ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16295%7Ccalcineurin.for.5634-7049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5634-7049.Ar_EST_120301b_c16295%7Ccalcineurin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12858%7Cran-binding.for.7174-8599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.7174-8599.Ar_EST_120301b_c12858%7Cran-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3327%7Cran-binding.for.6907-8456.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.6907-8456.Ar_EST_120301b_c3327%7Cran-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1425%7Cprotein.for.8613-11356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8613-11356.Ar_EST_120301b_c1425%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6272%7Cprotein.for.9901-11336.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9901-11336.Ar_EST_120301b_rep_c6272%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4396%7Cprotein.for.9311-11267.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9311-11267.Ar_EST_120301b_rep_c4396%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14041%7Cvacuolar.for.9928-10981.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9928-10981.Ar_EST_120301b_rep_c14041%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13503%7Cvacuolar.for.9120-10058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.9120-10058.Ar_EST_120301b_rep_c13503%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c404%7Cvacuolar.for.15625-17344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.15625-17344.Ar_EST_120301b_c404%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18351%7C---NA---.for.17275-18537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.17275-18537.Ar_EST_120301b_rep_c18351%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12162%7Cvacuolar.for.18168-19578.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.18168-19578.Ar_EST_120301b_c12162%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2368%7Cfp322549.for.19883-21105.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.19883-21105.Ar_EST_120301b_c2368%7Cfp322549.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9387%7Cdiphthamide.for.26530-28351.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26530-28351.Ar_EST_120301b_c9387%7Cdiphthamide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.for.28217-29702.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28217-29702.Ar_EST_120301b_c2037%7Cui-ff-if0-abs-g-23-0-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17943%7Cdimethyladenosine.for.29578-30676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.29578-30676.Ar_EST_120301b_c17943%7Cdimethyladenosine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13089%7Cbaac-.for.30820-32167.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.30820-32167.Ar_EST_120301b_c13089%7Cbaac-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2504%7Crhodanese.for.31745-33327.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.31745-33327.Ar_EST_120301b_c2504%7Crhodanese.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1282%7Cextracellular.for.33470-35788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33470-35788.120301b_Contig1282%7Cextracellular.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12161%7Cvacuolar.for.38373-40000.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.38373-40000.Ar_EST_120301b_c12161%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig790%7Cvacuolar.for.37386-39178.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37386-39178.120301b_Contig790%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1270%7Cvacuolar.for.39529-40776.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.39529-40776.Ar_EST_120301b_c1270%7Cvacuolar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12489%7Cpenicillin.for.40597-42131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.40597-42131.Ar_EST_120301b_c12489%7Cpenicillin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18123%7Cbeta-lactam.for.41777-43536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.41777-43536.Ar_EST_120301b_c18123%7Cbeta-lactam.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.for.43386-44881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43386-44881.Ar_EST_120301b_c9957%7Cnicotinate-nucleotide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8570%7Cprotein.for.44400-46657.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.44400-46657.Ar_EST_120301b_c8570%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17383%7Cdis3-like.for.46455-47626.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.46455-47626.Ar_EST_120301b_c17383%7Cdis3-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9772%7Cribonuclease.for.47164-48608.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.47164-48608.Ar_EST_120301b_c9772%7Cribonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c911%7Cww.for.49424-50682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49424-50682.Ar_EST_120301b_c911%7Cww.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17350%7Cpre-mrna-processing.for.49950-51324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.49950-51324.Ar_EST_120301b_c17350%7Cpre-mrna-processing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3739%7Cmagnesium.for.50593-52588.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.50593-52588.Ar_EST_120301b_c3739%7Cmagnesium.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13962%7Chypothetical.for.52735-53994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.52735-53994.Ar_EST_120301b_c13962%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c754%7Cixodes.for.53555-55026.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53555-55026.Ar_EST_120301b_c754%7Cixodes.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12519%7C---NA---.for.53383-54729.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.53383-54729.Ar_EST_120301b_c12519%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9860%7Cmitochondrial.for.54379-56046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.54379-56046.Ar_EST_120301b_c9860%7Cmitochondrial.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10748%7Cprotein.for.55764-57467.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55764-57467.Ar_EST_120301b_c10748%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1156%7Cring.for.57207-58362.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57207-58362.120301b_Contig1156%7Cring.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3551%7Cinosine.for.58094-59535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58094-59535.Ar_EST_120301b_c3551%7Cinosine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13720%7Caig2.for.59895-61233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59895-61233.Ar_EST_120301b_c13720%7Caig2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3065%7Caig2.for.59386-60746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59386-60746.Ar_EST_120301b_c3065%7Caig2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13535%7Cagencourt_85392014.for.59437-60831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.59437-60831.Ar_EST_120301b_c13535%7Cagencourt_85392014.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6824%7C26s.for.61052-62221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.61052-62221.Ar_EST_120301b_rep_c6824%7C26s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.for.63769-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63769-64983.Ar_EST_120301b_rep_c13614%7Cglucose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17330%7Cglucose-6-phosphate.for.63507-64746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63507-64746.Ar_EST_120301b_c17330%7Cglucose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1053%7Cglucose-6-phosphate.for.62782-64983.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62782-64983.120301b_Contig1053%7Cglucose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.for.63555-64786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.63555-64786.Ar_EST_120301b_rep_c14588%7Cglucose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig737%7Catp-dependent.for.64484-66186.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64484-66186.120301b_Contig737%7Catp-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15766%7Cuf439.for.68551-69854.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.68551-69854.Ar_EST_120301b_c15766%7Cuf439.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12200%7C---NA---.for.70153-71070.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70153-71070.Ar_EST_120301b_rep_c12200%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5884%7Cperoxisome.for.69596-71063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.69596-71063.Ar_EST_120301b_rep_c5884%7Cperoxisome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16068%7Cbrainf100763c7.for.70334-71744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.70334-71744.Ar_EST_120301b_c16068%7Cbrainf100763c7.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.for.71635-73107.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71635-73107.Ar_EST_120301b_c8312%7C6-phosphogluconolactonase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.for.71404-72896.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.71404-72896.Ar_EST_120301b_c19105%7C6-phosphogluconolactonase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9286%7Cdual.for.72557-73881.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72557-73881.Ar_EST_120301b_c9286%7Cdual.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1071%7C5.for.73667-75687.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.73667-75687.120301b_Contig1071%7C5.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10743%7Cbtb.for.77101-78400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77101-78400.Ar_EST_120301b_c10743%7Cbtb.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11327%7Cprotein.for.77757-79514.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77757-79514.Ar_EST_120301b_c11327%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15586%7Cphaseolus.for.80442-81906.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.80442-81906.Ar_EST_120301b_c15586%7Cphaseolus.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11139%7Csymbiotic.for.83479-84775.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.83479-84775.Ar_EST_120301b_c11139%7Csymbiotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig892%7Cregulator.for.87573-89936.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.87573-89936.120301b_Contig892%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1263%7C-dimethylguanosine.for.89157-90558.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89157-90558.Ar_EST_120301b_c1263%7C-dimethylguanosine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2059%7Cn.for.89882-91416.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89882-91416.Ar_EST_120301b_c2059%7Cn.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11524%7Clikely.for.90627-91691.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.90627-91691.Ar_EST_120301b_c11524%7Clikely.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16790%7Cchp.for.93546-94847.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.93546-94847.Ar_EST_120301b_c16790%7Cchp.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18329%7C---NA---.for.94213-95227.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.94213-95227.Ar_EST_120301b_rep_c18329%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20520%7Cwd-repeat.for.95947-98462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.95947-98462.Ar_EST_120301b_c20520%7Cwd-repeat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c880%7C---NA---.for.98021-99356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98021-99356.Ar_EST_120301b_c880%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c173%7Cprotein.for.98627-100080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98627-100080.Ar_EST_120301b_c173%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19251%7Ceb3rody01bclmk.for.99458-100778.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.99458-100778.Ar_EST_120301b_c19251%7Ceb3rody01bclmk.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig723%7Cprotein.for.100478-102532.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.100478-102532.120301b_Contig723%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2239%7Cprotein.for.101740-103409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101740-103409.Ar_EST_120301b_c2239%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1305%7Cpredicted.for.103067-104669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103067-104669.120301b_Contig1305%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig198%7Cphospholipid-binding.for.103629-105872.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.103629-105872.120301b_Contig198%7Cphospholipid-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7974%7Cacetyl-.for.108069-109618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108069-109618.Ar_EST_120301b_c7974%7Cacetyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16015%7Ccg17746-.for.109104-110368.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109104-110368.Ar_EST_120301b_rep_c16015%7Ccg17746-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4490%7Cprotein.for.108968-110877.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108968-110877.Ar_EST_120301b_rep_c4490%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4669%7Cprotein.for.108973-110818.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.108973-110818.Ar_EST_120301b_rep_c4669%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13688%7Cpredicted.for.109133-110247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109133-110247.Ar_EST_120301b_rep_c13688%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20276%7Cprotein.for.110214-111786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.110214-111786.Ar_EST_120301b_c20276%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1941%7Catpase.for.111493-112784.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.111493-112784.Ar_EST_120301b_c1941%7Catpase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2591%7Cprotein.for.113440-115358.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113440-115358.Ar_EST_120301b_c2591%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7163%7Ceukaryotic.for.117437-119179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117437-119179.Ar_EST_120301b_rep_c7163%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4765%7Cded1p.for.117970-119554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117970-119554.Ar_EST_120301b_rep_c4765%7Cded1p.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19714%7Ceukaryotic.for.117455-118809.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117455-118809.Ar_EST_120301b_rep_c19714%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c10202%7Ceukaryotic.for.117728-119153.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117728-119153.Ar_EST_120301b_rep_c10202%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11350%7Cmitogen-activated.for.123622-124964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.123622-124964.Ar_EST_120301b_c11350%7Cmitogen-activated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2610%7Caromatic.for.124921-126417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.124921-126417.Ar_EST_120301b_c2610%7Caromatic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11315%7Camino.for.125849-127108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.125849-127108.Ar_EST_120301b_c11315%7Camino.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10428%7Creverse.for.128141-129655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.128141-129655.Ar_EST_120301b_c10428%7Creverse.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8273%7Ctpa_exp%3A.for.126388-131134.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.126388-131134.Ar_EST_120301b_c8273%7Ctpa_exp%3A.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:62 now processing 0
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
total clusters:62 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:62 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
total clusters:62 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:52 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:40 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:48 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:50 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:56 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:42 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/27/52/AR_HYBRID_130113_TINTIN_EF2ON_C37//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C37/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:33 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.for.5543-7040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.5543-7040.gi%7C284084733%7Cgb%7CEFC38422%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.for.8727-11341.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.8727-11341.gi%7C284085167%7Cgb%7CEFC38853%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.for.26597-28720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.26597-28720.gi%7C284096132%7Cgb%7CEFC49761%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.for.28923-30631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.28923-30631.gi%7C284083629%7Cgb%7CEFC37330%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.for.34189-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34189-35447.gi%7C284082445%7Cgb%7CEFC36163%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284087192%7Cgb%7CEFC40863%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.for.33656-35504.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33656-35504.gi%7C284097165%7Cgb%7CEFC50792%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.for.33683-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33683-35435.gi%7C284089173%7Cgb%7CEFC42832%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.for.33665-35102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33665-35102.gi%7C284081068%7Cgb%7CEFC35282%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.for.34123-35147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34123-35147.gi%7C284093424%7Cgb%7CEFC47062%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.for.34099-35018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34099-35018.gi%7C284092309%7Cgb%7CEFC45952%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.for.33572-35501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33572-35501.gi%7C284094136%7Cgb%7CEFC47771%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.for.33662-35564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33662-35564.gi%7C284090349%7Cgb%7CEFC44001%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.for.33668-34943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33668-34943.gi%7C284082443%7Cgb%7CEFC36161%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.for.33617-35537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33617-35537.gi%7C284085688%7Cgb%7CEFC39370%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.for.33680-35447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33680-35447.gi%7C284092790%7Cgb%7CEFC46430%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.34147-35168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34147-35168.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.for.33563-35435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33563-35435.gi%7C284083991%7Cgb%7CEFC37688%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.for.33907-35474.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33907-35474.gi%7C284089853%7Cgb%7CEFC43508%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.for.33895-35555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33895-35555.gi%7C284086220%7Cgb%7CEFC39898%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.for.33871-35477.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33871-35477.gi%7C284089128%7Cgb%7CEFC42787%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.34528-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.34528-35552.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.for.33632-35552.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.33632-35552.gi%7C284089145%7Cgb%7CEFC42804%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.for.35089-37517.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.35089-37517.gi%7C284087906%7Cgb%7CEFC41573%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.for.37402-40913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.37402-40913.gi%7C284086843%7Cgb%7CEFC40517%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.for.43418-45108.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.43418-45108.gi%7C284093100%7Cgb%7CEFC46739%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.for.55767-57924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.55767-57924.gi%7C284091410%7Cgb%7CEFC45057%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.for.57245-58185.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.57245-58185.gi%7C284091249%7Cgb%7CEFC44897%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.for.58107-59550.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.58107-59550.gi%7C284096886%7Cgb%7CEFC50513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.for.62731-65120.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.62731-65120.gi%7C284094945%7Cgb%7CEFC48577%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.for.64423-65709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.64423-65709.gi%7C284090158%7Cgb%7CEFC43811%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.for.72541-73910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.72541-73910.gi%7C284083325%7Cgb%7CEFC37029%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.for.77122-78884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.77122-78884.gi%7C284091054%7Cgb%7CEFC44703%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.for.89261-91623.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.89261-91623.gi%7C284086426%7Cgb%7CEFC40103%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.for.91129-92600.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.91129-92600.gi%7C284087562%7Cgb%7CEFC41231%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.for.96585-98264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.96585-98264.gi%7C284088507%7Cgb%7CEFC42170%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.for.98815-100028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.98815-100028.gi%7C284090894%7Cgb%7CEFC44543%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.for.101777-103319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.101777-103319.gi%7C284094387%7Cgb%7CEFC48021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.for.109338-110853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109338-110853.gi%7C284087483%7Cgb%7CEFC41152%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.for.109010-110669.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.109010-110669.gi%7C284085542%7Cgb%7CEFC39225%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284091466%7Cgb%7CEFC45112%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284092518%7Cgb%7CEFC46160%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.for.113569-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113569-115033.gi%7C284092387%7Cgb%7CEFC46029%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.for.113626-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.113626-115033.gi%7C284091231%7Cgb%7CEFC44879%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.for.114033-115033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.114033-115033.gi%7C284096309%7Cgb%7CEFC49937%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.for.117468-119525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.117468-119525.gi%7C284090160%7Cgb%7CEFC43813%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.120511-122054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122054.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.120520-121706.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-121706.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.120511-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122392.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.121060-122404.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.121060-122404.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.120520-122392.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120520-122392.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.120511-122051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C37.120511-122051.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 16
...processing 1 of 16
...processing 2 of 16
...processing 3 of 16
...processing 4 of 16
...processing 5 of 16
...processing 6 of 16
...processing 7 of 16
...processing 8 of 16
...processing 9 of 16
...processing 10 of 16
...processing 11 of 16
...processing 12 of 16
...processing 13 of 16
...processing 14 of 16
...processing 15 of 16
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
total clusters:20 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
...processing 0 of 14
...processing 1 of 14
...processing 2 of 14
...processing 3 of 14
...processing 4 of 14
...processing 5 of 14
...processing 6 of 14
...processing 7 of 14
...processing 8 of 14
...processing 9 of 14
...processing 10 of 14
...processing 11 of 14
...processing 12 of 14
...processing 13 of 14
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
total clusters:30 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:30 now processing 0
total clusters:30 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.690-1692.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4266-6856.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.8812-11160.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.26729-29502.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.31019-31967.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.33669-35588.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.37601-40713.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.44599-46457.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.46654-48408.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.50792-52388.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.52747-54826.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.55963-57724.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.62930-65986.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.68744-69654.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.70533-71547.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.71592-72907.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.73866-75487.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.93745-94651.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.96146-99156.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.99657-100578.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.103266-105672.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.109167-111586.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.111692-112584.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.113639-115158.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.117606-119325.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.128340-130208.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.7106-8399.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.15824-20905.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.29122-30476.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.31942-33158.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.35288-37317.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.40796-41931.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.41976-43336.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.43585-44908.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.50149-51215.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.54578-55855.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.57406-58213.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.58293-59350.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.59574-61033.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.69790-70870.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.72740-73710.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.77300-79314.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.80641-84575.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.87772-92400.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.100677-103209.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.120710-122204.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.125120-126908.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C38
Length: 133197
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:10 current j:0
j_size:10 current j:1
j_size:10 current j:2
j_size:10 current j:3
j_size:10 current j:4
j_size:10 current j:5
j_size:10 current j:6
j_size:10 current j:7
j_size:10 current j:8
j_size:10 current j:9
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C38.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:3 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15228%7Crheb.for.1-1268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1-1268.Ar_EST_120301b_c15228%7Crheb.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16286%7Cmeloidogyne.for.1526-3096.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.1526-3096.Ar_EST_120301b_c16286%7Cmeloidogyne.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8400%7Chypothetical.for.826-2788.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.826-2788.Ar_EST_120301b_c8400%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.for.7019-8207.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7019-8207.Ar_EST_120301b_c16746%7Cmc1-0049t-m146-h12-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14558%7Cdedicator.for.7705-8887.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.7705-8887.Ar_EST_120301b_c14558%7Cdedicator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15786%7Cfn885936.for.10647-11929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.10647-11929.Ar_EST_120301b_c15786%7Cfn885936.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1214%7Cphosphate.for.12409-14139.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12409-14139.120301b_Contig1214%7Cphosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10859%7Cphosphate.for.13552-14841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.13552-14841.Ar_EST_120301b_c10859%7Cphosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16453%7Cpre-mrna.for.14309-15975.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.14309-15975.Ar_EST_120301b_c16453%7Cpre-mrna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7753%7Ctranslation.for.16013-17972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16013-17972.Ar_EST_120301b_c7753%7Ctranslation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14209%7Cpredicted.for.19709-20930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.19709-20930.Ar_EST_120301b_c14209%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18465%7Cpredicted.for.20179-21432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20179-21432.Ar_EST_120301b_c18465%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12710%7Cixodes.for.20982-22492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.20982-22492.Ar_EST_120301b_c12710%7Cixodes.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16149%7Cactin.for.22395-23718.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.22395-23718.Ar_EST_120301b_c16149%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3321%7Cfy454559.for.26643-28278.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.26643-28278.Ar_EST_120301b_c3321%7Cfy454559.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1245%7Cregulator.for.28414-30245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.28414-30245.120301b_Contig1245%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8350%7Cglycoside.for.30495-32566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30495-32566.Ar_EST_120301b_c8350%7Cglycoside.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18494%7Cdiacylglycerol.for.36778-38537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.36778-38537.Ar_EST_120301b_c18494%7Cdiacylglycerol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5917%7Cglycosyl.for.40075-41960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.40075-41960.Ar_EST_120301b_rep_c5917%7Cglycosyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4688%7Cglycosyl.for.39920-41840.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.39920-41840.Ar_EST_120301b_rep_c4688%7Cglycosyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8876%7Cprotein.for.42940-44630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.42940-44630.Ar_EST_120301b_c8876%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12607%7Ccarboxypeptidase.for.44948-46147.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44948-46147.Ar_EST_120301b_c12607%7Ccarboxypeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15694%7Cfy863259.for.47931-49182.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.47931-49182.Ar_EST_120301b_c15694%7Cfy863259.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6729%7Chypothetical.for.48968-50536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48968-50536.Ar_EST_120301b_rep_c6729%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6105%7Cmusra09tf.for.49359-50604.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.49359-50604.Ar_EST_120301b_rep_c6105%7Cmusra09tf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig360%7Cendonuclease.for.48954-50714.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.48954-50714.120301b_Contig360%7Cendonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1875%7Cregulator.for.50892-52717.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.50892-52717.Ar_EST_120301b_c1875%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8971%7Cgpi-anchored.for.52653-54255.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.52653-54255.Ar_EST_120301b_c8971%7Cgpi-anchored.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1204%7Cantigenic.for.54431-55800.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.54431-55800.120301b_Contig1204%7Cantigenic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2993%7Cala-interacting.for.55690-57429.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55690-57429.Ar_EST_120301b_c2993%7Cala-interacting.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17158%7CCCFBM4D02.for.57563-58850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.57563-58850.Ar_EST_120301b_c17158%7CCCFBM4D02.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3003%7Cserine.for.61670-63495.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.61670-63495.Ar_EST_120301b_c3003%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8793%7Ckinase.for.62456-63890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.62456-63890.Ar_EST_120301b_c8793%7Ckinase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c181%7Cmannose-p-dolichol.for.70397-71993.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70397-71993.Ar_EST_120301b_c181%7Cmannose-p-dolichol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17865%7Cmannose-p-dolichol.for.70718-71966.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70718-71966.Ar_EST_120301b_c17865%7Cmannose-p-dolichol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1474%7Cregulator.for.77795-79191.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.77795-79191.Ar_EST_120301b_c1474%7Cregulator.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16328%7Cphytanoyl-.for.80693-82050.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.80693-82050.Ar_EST_120301b_c16328%7Cphytanoyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14940%7C---NA---.for.93035-94410.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93035-94410.Ar_EST_120301b_c14940%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3508%7Crhogef.for.91581-93280.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91581-93280.Ar_EST_120301b_c3508%7Crhogef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1078%7Cpleckstrin.for.91910-94036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.91910-94036.Ar_EST_120301b_c1078%7Cpleckstrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12304%7Ccls_c.for.93028-94066.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.93028-94066.Ar_EST_120301b_c12304%7Ccls_c.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13759%7Cfoaa-.for.104296-105162.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104296-105162.Ar_EST_120301b_c13759%7Cfoaa-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9555%7Cubiquitin.for.104630-106307.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104630-106307.Ar_EST_120301b_c9555%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19079%7Cubiquitin.for.107333-108411.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.107333-108411.Ar_EST_120301b_c19079%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8071%7Cubiquitin.for.106552-108586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.106552-108586.Ar_EST_120301b_c8071%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9823%7CCF0007142.for.116219-117319.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.116219-117319.Ar_EST_120301b_c9823%7CCF0007142.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17572%7C---NA---.for.117192-118387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.117192-118387.Ar_EST_120301b_c17572%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20039%7C60s.for.118952-120109.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120109.Ar_EST_120301b_rep_c20039%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9805%7C0246832.for.119506-120448.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119506-120448.Ar_EST_120301b_rep_c9805%7C0246832.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11483%7Cisoform.for.119403-120493.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119403-120493.Ar_EST_120301b_rep_c11483%7Cisoform.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5984%7Cribosomal.for.118952-120346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120346.Ar_EST_120301b_rep_c5984%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5385%7Cribosomal.for.118966-120352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118966-120352.Ar_EST_120301b_rep_c5385%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20112%7C60s.for.119424-120420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119424-120420.Ar_EST_120301b_rep_c20112%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1975%7Cribosomal.for.118868-120525.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118868-120525.Ar_EST_120301b_c1975%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20290%7Cribosomal.for.118952-120343.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120343.Ar_EST_120301b_rep_c20290%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20093%7C60s.for.118952-120295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120295.Ar_EST_120301b_rep_c20093%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5245%7Cribosomal.for.118952-120380.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.118952-120380.Ar_EST_120301b_rep_c5245%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19529%7Cppe00006243.for.119535-120422.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119535-120422.Ar_EST_120301b_rep_c19529%7Cppe00006243.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig972%7Ctetratricopeptide.for.119793-121397.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119793-121397.120301b_Contig972%7Ctetratricopeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15821%7Chypothetical.for.125074-126487.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.125074-126487.Ar_EST_120301b_c15821%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7993%7Chypothetical.for.128465-130544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.128465-130544.Ar_EST_120301b_c7993%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6167%7Crho.for.130038-131215.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.130038-131215.Ar_EST_120301b_rep_c6167%7Crho.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4353%7Cras-related.for.129829-131313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129829-131313.Ar_EST_120301b_rep_c4353%7Cras-related.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:41 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:41 now processing 0
total clusters:41 now processing 0
total clusters:41 now processing 0
...processing 0 of 2
...processing 1 of 2
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:37 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:23 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:36 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:52 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:42 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:45 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:32 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:44 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/13/AB/AR_HYBRID_130113_TINTIN_EF2ON_C38//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C38/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:26 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.for.12016-13166.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.12016-13166.gi%7C284095853%7Cgb%7CEFC49482%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.for.16022-17814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.16022-17814.gi%7C284087172%7Cgb%7CEFC40843%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.for.30355-32672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.30355-32672.gi%7C284095198%7Cgb%7CEFC48829%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.for.44261-46268.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.44261-46268.gi%7C284096098%7Cgb%7CEFC49727%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.for.55695-57505.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.55695-57505.gi%7C284094374%7Cgb%7CEFC48008%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.for.59265-61230.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59265-61230.gi%7C284082829%7Cgb%7CEFC36540%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.for.59268-60843.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.59268-60843.gi%7C284095559%7Cgb%7CEFC49189%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.for.67324-68455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.67324-68455.gi%7C284096101%7Cgb%7CEFC49730%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.for.69162-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70660.gi%7C284090298%7Cgb%7CEFC43950%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.for.69582-70540.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69582-70540.gi%7C284096572%7Cgb%7CEFC50200%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.for.69174-70630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69174-70630.gi%7C284084962%7Cgb%7CEFC38649%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.for.69162-70354.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69162-70354.gi%7C284081791%7Cgb%7CEFC35658%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.for.69168-70963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70963.gi%7C284096459%7Cgb%7CEFC50087%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.for.69654-70660.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69654-70660.gi%7C284093690%7Cgb%7CEFC47327%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.for.69159-70960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69159-70960.gi%7C284095073%7Cgb%7CEFC48705%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.for.69168-70654.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.69168-70654.gi%7C284083745%7Cgb%7CEFC37445%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.for.70362-71972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.70362-71972.gi%7C284097133%7Cgb%7CEFC50760%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.for.75345-76793.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76793.gi%7C284095573%7Cgb%7CEFC49203%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284085812%7Cgb%7CEFC39493%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092862%7Cgb%7CEFC46502%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.75339-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76805.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284089636%7Cgb%7CEFC43292%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.for.75342-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75342-76799.gi%7C284090872%7Cgb%7CEFC44522%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.for.75684-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75684-76808.gi%7C284081627%7Cgb%7CEFC35562%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.for.75405-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75405-76805.gi%7C284093011%7Cgb%7CEFC46651%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.for.75429-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75429-76796.gi%7C284091565%7Cgb%7CEFC45211%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.for.75537-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75537-76808.gi%7C284085749%7Cgb%7CEFC39431%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284090598%7Cgb%7CEFC44249%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.for.75414-76817.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75414-76817.gi%7C284095689%7Cgb%7CEFC49319%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.for.75339-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76799.gi%7C284088013%7Cgb%7CEFC41679%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.for.75402-76799.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76799.gi%7C284092337%7Cgb%7CEFC45979%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.for.75408-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75408-76808.gi%7C284093381%7Cgb%7CEFC47019%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.for.75339-76796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76796.gi%7C284087750%7Cgb%7CEFC41418%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.for.75360-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75360-76808.gi%7C284097171%7Cgb%7CEFC50798%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.for.75390-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76808.gi%7C284084253%7Cgb%7CEFC37948%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.for.75396-76726.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75396-76726.gi%7C284096980%7Cgb%7CEFC50607%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.for.75588-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75588-76805.gi%7C284082060%7Cgb%7CEFC35846%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.for.75366-76534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76534.gi%7C284089921%7Cgb%7CEFC43576%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.for.75339-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75339-76808.gi%7C284087888%7Cgb%7CEFC41555%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.for.75381-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76808.gi%7C284090604%7Cgb%7CEFC44255%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.for.75402-76802.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75402-76802.gi%7C284093718%7Cgb%7CEFC47355%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.for.75366-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75366-76808.gi%7C284081289%7Cgb%7CEFC35375%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.for.75381-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75381-76805.gi%7C284084867%7Cgb%7CEFC38555%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.for.75390-76805.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75390-76805.gi%7C284092603%7Cgb%7CEFC46244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.for.75345-76808.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.75345-76808.gi%7C284094751%7Cgb%7CEFC48384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.for.82526-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86036.gi%7C284093164%7Cgb%7CEFC46803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.for.83467-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83467-86042.gi%7C284084016%7Cgb%7CEFC37713%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.for.82526-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86051.gi%7C284095844%7Cgb%7CEFC49473%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.for.82478-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86054.gi%7C284087886%7Cgb%7CEFC41553%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.for.83596-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86024.gi%7C284096255%7Cgb%7CEFC49883%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.for.82526-86078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86078.gi%7C284085992%7Cgb%7CEFC39672%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.for.83551-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86042.gi%7C284095843%7Cgb%7CEFC49472%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284084015%7Cgb%7CEFC37712%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.83617-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83617-86012.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.for.83590-87575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-87575.gi%7C284085851%7Cgb%7CEFC39532%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.for.83623-86063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86063.gi%7C284088147%7Cgb%7CEFC41812%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.for.83623-85985.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-85985.gi%7C284080829%7Cgb%7CEFC35202%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.for.83554-86027.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86027.gi%7C284094838%7Cgb%7CEFC48471%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088669%7Cgb%7CEFC42331%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.for.82526-86387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86387.gi%7C284084257%7Cgb%7CEFC37951%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.for.82478-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86126.gi%7C284090138%7Cgb%7CEFC43791%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.for.83596-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86042.gi%7C284087824%7Cgb%7CEFC41491%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.for.83551-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-86036.gi%7C284082306%7Cgb%7CEFC36041%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.83551-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83551-87245.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.for.82517-86612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86612.gi%7C284082687%7Cgb%7CEFC36400%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.for.83623-86051.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86051.gi%7C284086383%7Cgb%7CEFC40060%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.for.83566-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83566-86015.gi%7C284087642%7Cgb%7CEFC41310%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284097003%7Cgb%7CEFC50630%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.83554-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86039.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.for.83590-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86015.gi%7C284084537%7Cgb%7CEFC38229%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.82517-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86054.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.for.83590-86033.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86033.gi%7C284082747%7Cgb%7CEFC36459%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.82526-87245.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-87245.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.82523-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86054.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.82526-86030.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86030.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.for.82478-86039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82478-86039.gi%7C284087076%7Cgb%7CEFC40748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.for.82526-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86060.gi%7C284083020%7Cgb%7CEFC36728%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.for.82514-86093.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82514-86093.gi%7C284094023%7Cgb%7CEFC47658%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.for.82523-86060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86060.gi%7C284082395%7Cgb%7CEFC36118%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.for.83623-86396.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86396.gi%7C284096530%7Cgb%7CEFC50158%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.for.83623-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86042.gi%7C284088203%7Cgb%7CEFC41868%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.83659-86015.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83659-86015.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.for.82526-86081.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86081.gi%7C284090154%7Cgb%7CEFC43807%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.for.82517-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-86024.gi%7C284083343%7Cgb%7CEFC37047%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.for.83572-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83572-86042.gi%7C284086531%7Cgb%7CEFC40207%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.83554-86018.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86018.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.for.82526-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86042.gi%7C284090243%7Cgb%7CEFC43896%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.82526-86492.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86492.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.82517-87083.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82517-87083.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.for.82526-86054.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86054.gi%7C284092203%7Cgb%7CEFC45846%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.for.83593-86075.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83593-86075.gi%7C284084423%7Cgb%7CEFC38116%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.for.83596-86102.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83596-86102.gi%7C284080960%7Cgb%7CEFC35246%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.for.83623-86024.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83623-86024.gi%7C284088463%7Cgb%7CEFC42126%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.83554-86042.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83554-86042.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.for.82526-86360.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86360.gi%7C284096176%7Cgb%7CEFC49805%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.for.83590-86036.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-86036.gi%7C284095183%7Cgb%7CEFC48815%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.for.83641-86126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83641-86126.gi%7C284080837%7Cgb%7CEFC35205%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.for.82523-86432.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82523-86432.gi%7C284087676%7Cgb%7CEFC41344%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.for.82526-86021.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.82526-86021.gi%7C284087857%7Cgb%7CEFC41524%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.for.83599-86012.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83599-86012.gi%7C284080808%7Cgb%7CEFC35194%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.for.83590-85994.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.83590-85994.gi%7C284080953%7Cgb%7CEFC35244%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.for.101030-102665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.101030-102665.gi%7C284095310%7Cgb%7CEFC48941%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.for.104855-109073.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.104855-109073.gi%7C284084277%7Cgb%7CEFC37971%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.for.109610-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110919.gi%7C284089757%7Cgb%7CEFC43413%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.for.109649-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-110919.gi%7C284081553%7Cgb%7CEFC35513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.for.109652-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110919.gi%7C284094669%7Cgb%7CEFC48302%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.for.109634-110913.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109634-110913.gi%7C284084490%7Cgb%7CEFC38182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.for.109628-110919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109628-110919.gi%7C284084327%7Cgb%7CEFC38021%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.for.109610-111339.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-111339.gi%7C284086172%7Cgb%7CEFC39850%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.for.109616-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110967.gi%7C284095087%7Cgb%7CEFC48719%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.for.109619-111045.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-111045.gi%7C284088345%7Cgb%7CEFC42009%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.for.109652-110967.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109652-110967.gi%7C284097002%7Cgb%7CEFC50629%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.for.109637-110937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-110937.gi%7C284088424%7Cgb%7CEFC42088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.for.109331-110925.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109331-110925.gi%7C284082360%7Cgb%7CEFC36088%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.for.109604-111387.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109604-111387.gi%7C284092908%7Cgb%7CEFC46548%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.for.109616-110988.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109616-110988.gi%7C284091502%7Cgb%7CEFC45148%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.for.109958-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109958-110916.gi%7C284089682%7Cgb%7CEFC43338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.for.109610-110916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109610-110916.gi%7C284081454%7Cgb%7CEFC35457%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.for.109541-110931.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109541-110931.gi%7C284088392%7Cgb%7CEFC42056%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.for.109619-114930.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109619-114930.gi%7C284085412%7Cgb%7CEFC39096%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.for.109649-111183.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109649-111183.gi%7C284088433%7Cgb%7CEFC42096%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.for.109643-114861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109643-114861.gi%7C284096508%7Cgb%7CEFC50136%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.for.109637-114897.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.109637-114897.gi%7C284086579%7Cgb%7CEFC40255%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.for.119173-120386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.119173-120386.gi%7C284085441%7Cgb%7CEFC39125%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.for.129852-131111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129852-131111.gi%7C284090460%7Cgb%7CEFC44112%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.for.129888-130990.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C38.129888-130990.gi%7C284091118%7Cgb%7CEFC44766%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 25
...processing 1 of 25
...processing 2 of 25
...processing 3 of 25
...processing 4 of 25
...processing 5 of 25
...processing 6 of 25
...processing 7 of 25
...processing 8 of 25
...processing 9 of 25
...processing 10 of 25
...processing 11 of 25
...processing 12 of 25
...processing 13 of 25
...processing 14 of 25
...processing 15 of 25
...processing 16 of 25
...processing 17 of 25
...processing 18 of 25
...processing 19 of 25
...processing 20 of 25
...processing 21 of 25
...processing 22 of 25
...processing 23 of 25
...processing 24 of 25
total clusters:14 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 21
...processing 1 of 21
...processing 2 of 21
...processing 3 of 21
...processing 4 of 21
...processing 5 of 21
...processing 6 of 21
...processing 7 of 21
...processing 8 of 21
...processing 9 of 21
...processing 10 of 21
...processing 11 of 21
...processing 12 of 21
...processing 13 of 21
...processing 14 of 21
...processing 15 of 21
...processing 16 of 21
...processing 17 of 21
...processing 18 of 21
...processing 19 of 21
...processing 20 of 21
...trimming the rest
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 22
...processing 1 of 22
...processing 2 of 22
...processing 3 of 22
...processing 4 of 22
...processing 5 of 22
...processing 6 of 22
...processing 7 of 22
...processing 8 of 22
...processing 9 of 22
...processing 10 of 22
...processing 11 of 22
...processing 12 of 22
...processing 13 of 22
...processing 14 of 22
...processing 15 of 22
...processing 16 of 22
...processing 17 of 22
...processing 18 of 22
...processing 19 of 22
...processing 20 of 22
...processing 21 of 22
total clusters:12 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 20
...processing 1 of 20
...processing 2 of 20
...processing 3 of 20
...processing 4 of 20
...processing 5 of 20
...processing 6 of 20
...processing 7 of 20
...processing 8 of 20
...processing 9 of 20
...processing 10 of 20
...processing 11 of 20
...processing 12 of 20
...processing 13 of 20
...processing 14 of 20
...processing 15 of 20
...processing 16 of 20
...processing 17 of 20
...processing 18 of 20
...processing 19 of 20
...trimming the rest
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
total clusters:23 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.0-1068.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.14508-15775.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.26842-28089.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.30554-32472.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.36905-38337.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.40119-41760.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.49167-50404.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.51091-52517.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.52826-55600.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.61869-63690.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.77994-78991.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.80892-81850.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.82716-86883.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.91757-94210.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.101229-102851.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.104829-108873.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.109809-114661.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.116418-117119.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.119146-121197.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.125273-126287.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.1025-2898.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.7134-8687.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.10846-11729.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.12608-14641.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.16212-17785.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.19908-23518.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.28613-30052.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.43139-44430.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.44460-46068.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.55889-57367.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.57762-58650.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.67523-68255.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.69358-71793.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.75544-76608.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.117391-118195.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.128664-131113.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C39
Length: 100272
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:3 current j:0
j_size:3 current j:1
j_size:3 current j:2
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C39.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:13 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:7 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:2 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13753%7Czinc.for.1-924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1-924.Ar_EST_120301b_c13753%7Czinc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19066%7Chypothetical.for.789-2082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.789-2082.Ar_EST_120301b_c19066%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig218%7Cnexus.for.334-2773.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.334-2773.120301b_Contig218%7Cnexus.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14313%7C---NA---.for.2604-4481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2604-4481.Ar_EST_120301b_c14313%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19310%7C1351925.for.2914-4175.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2914-4175.Ar_EST_120301b_c19310%7C1351925.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12834%7C1351925.for.2793-4091.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2793-4091.Ar_EST_120301b_c12834%7C1351925.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16703%7C454.for.2095-3484.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.2095-3484.Ar_EST_120301b_c16703%7C454.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18347%7Cribosomal.for.5241-6295.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.5241-6295.Ar_EST_120301b_rep_c18347%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12088%7Cnucleosome.for.4895-6049.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-6049.Ar_EST_120301b_rep_c12088%7Cnucleosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18245%7Ceukaryotic.for.4895-5920.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4895-5920.Ar_EST_120301b_rep_c18245%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3465%7Cexonuclease.for.6573-8065.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6573-8065.Ar_EST_120301b_c3465%7Cexonuclease.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4109%7Cactin.for.8275-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8275-9534.Ar_EST_120301b_rep_c4109%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5621%7Cactin.for.8469-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8469-9548.Ar_EST_120301b_rep_c5621%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19797%7Cactin.for.8462-9544.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8462-9544.Ar_EST_120301b_rep_c19797%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6543%7Cactin.for.8276-9534.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8276-9534.Ar_EST_120301b_rep_c6543%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17737%7Cactin.for.8403-9496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8403-9496.Ar_EST_120301b_rep_c17737%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8147%7Ccofilin.for.8464-9533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8464-9533.Ar_EST_120301b_rep_c8147%7Ccofilin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.for.8505-9548.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8505-9548.Ar_EST_120301b_rep_c20113%7Cactin-depolymerizing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7396%7Cuncharacterized.for.9271-10874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9271-10874.Ar_EST_120301b_rep_c7396%7Cuncharacterized.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12055%7Ccg18418-pa.for.10263-11531.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10263-11531.Ar_EST_120301b_c12055%7Ccg18418-pa.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4634%7Cprotein.for.11895-13364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11895-13364.Ar_EST_120301b_rep_c4634%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1801%7Ctumor.for.11297-12731.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11297-12731.Ar_EST_120301b_c1801%7Ctumor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13099%7Ctumor.for.11414-12710.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11414-12710.Ar_EST_120301b_c13099%7Ctumor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13018%7Ctumor.for.11957-13023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.11957-13023.Ar_EST_120301b_rep_c13018%7Ctumor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10348%7Cnb405-g03.for.14482-15853.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.14482-15853.Ar_EST_120301b_c10348%7Cnb405-g03.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8849%7Carp2.for.20682-21692.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20682-21692.Ar_EST_120301b_c8849%7Carp2.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4195%7Cactin.for.20151-21811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20151-21811.Ar_EST_120301b_rep_c4195%7Cactin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12311%7Cc.for.29373-30667.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.29373-30667.Ar_EST_120301b_c12311%7Cc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12329%7Ctyrosine.for.32236-33500.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.32236-33500.Ar_EST_120301b_c12329%7Ctyrosine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7147%7Cprotein.for.34104-36543.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.34104-36543.Ar_EST_120301b_rep_c7147%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13197%7Cprotein.for.33828-35252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33828-35252.Ar_EST_120301b_rep_c13197%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12720%7Cprotein.for.35786-37179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.35786-37179.Ar_EST_120301b_c12720%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16530%7Cprotein.for.37347-38707.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.37347-38707.Ar_EST_120301b_c16530%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6488%7Cperoxisomal.for.38875-40593.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38875-40593.Ar_EST_120301b_rep_c6488%7Cperoxisomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3260%7Camp-dependent.for.38868-40952.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38868-40952.Ar_EST_120301b_c3260%7Camp-dependent.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3131%7Ccarboxypeptidase.for.40763-42063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40763-42063.Ar_EST_120301b_c3131%7Ccarboxypeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2100%7Ccarboxypeptidase.for.41304-43144.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41304-43144.Ar_EST_120301b_c2100%7Ccarboxypeptidase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c98%7Ckinesin.for.44885-47294.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.44885-47294.Ar_EST_120301b_c98%7Ckinesin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18997%7Cchromosome.for.46355-47842.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.46355-47842.Ar_EST_120301b_c18997%7Cchromosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3674%7Cviral.for.47108-49237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.47108-49237.Ar_EST_120301b_c3674%7Cviral.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15127%7Cankyrin.for.50570-51694.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.50570-51694.Ar_EST_120301b_c15127%7Cankyrin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c40%7C2-oxoglutarate.for.51287-55022.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51287-55022.Ar_EST_120301b_c40%7C2-oxoglutarate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15498%7Cheat.for.55491-57055.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55491-57055.Ar_EST_120301b_c15498%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18376%7Cheat.for.56061-57285.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.56061-57285.Ar_EST_120301b_rep_c18376%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10445%7Cacid.for.57635-59202.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.57635-59202.Ar_EST_120301b_c10445%7Cacid.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6230%7Cproteasome.for.67388-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67388-68889.Ar_EST_120301b_rep_c6230%7Cproteasome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6671%7Cproteasome.for.67396-68889.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67396-68889.Ar_EST_120301b_rep_c6671%7Cproteasome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.for.70151-71575.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.70151-71575.Ar_EST_120301b_c18287%7Cvirginia_state_96561_2_lrc14307.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c484%7Cring.for.75125-76585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75125-76585.Ar_EST_120301b_c484%7Cring.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c447%7Cring.for.75210-76875.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.75210-76875.Ar_EST_120301b_c447%7Cring.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9829%7Cap-3.for.76139-77892.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.76139-77892.Ar_EST_120301b_c9829%7Cap-3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3233%7Cdelta.for.77329-79597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.77329-79597.Ar_EST_120301b_c3233%7Cdelta.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11437%7Cap3d1.for.78861-80064.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78861-80064.Ar_EST_120301b_c11437%7Cap3d1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig730%7Csucrose.for.80010-82314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80010-82314.120301b_Contig730%7Csucrose.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2139%7Cppaa.for.81749-83046.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.81749-83046.Ar_EST_120301b_c2139%7Cppaa.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.for.82248-83524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.82248-83524.Ar_EST_120301b_c12678%7Cf-box_lrr-repeat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17905%7Chypothetical.for.87957-89135.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87957-89135.Ar_EST_120301b_rep_c17905%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.for.88105-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88105-89314.Ar_EST_120301b_rep_c5855%7Cagencourt_50136586.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18715%7Cest29560.for.88099-89406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88099-89406.Ar_EST_120301b_rep_c18715%7Cest29560.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.for.88034-89440.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88034-89440.Ar_EST_120301b_rep_c6749%7Cpgsp0011j20.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4535%7Cnucleosome.for.87965-89314.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87965-89314.Ar_EST_120301b_rep_c4535%7Cnucleosome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c8267%7C60s.for.88442-89564.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.88442-89564.Ar_EST_120301b_rep_c8267%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.for.87968-89140.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.87968-89140.Ar_EST_120301b_c1246%7Cucrcp01_052_g05_t3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19666%7Cpredicted.for.89138-90434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89138-90434.Ar_EST_120301b_rep_c19666%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6620%7Cprotein.for.89020-90455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89020-90455.Ar_EST_120301b_rep_c6620%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10160%7Cubiquitin.for.94605-95858.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.94605-95858.Ar_EST_120301b_c10160%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig284%7Cubiquitin.for.93053-95923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93053-95923.120301b_Contig284%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2103%7Cubiquitin.for.92176-94058.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.92176-94058.Ar_EST_120301b_c2103%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3295%7Chistone.for.95180-96441.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.95180-96441.Ar_EST_120301b_c3295%7Chistone.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c49%7Cadenylyl.for.96722-98599.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96722-98599.Ar_EST_120301b_c49%7Cadenylyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5021%7Cadenylyl.for.97187-98435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97187-98435.Ar_EST_120301b_rep_c5021%7Cadenylyl.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig169%7Ctrna-dihydrouridine.for.97813-99168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.97813-99168.120301b_Contig169%7Ctrna-dihydrouridine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11871%7Chypothetical.for.99403-100272.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.99403-100272.Ar_EST_120301b_c11871%7Chypothetical.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:38 now processing 0
total clusters:38 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:31 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:39 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:39 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:32 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:42 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:39 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:47 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:31 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/AF/C2/AR_HYBRID_130113_TINTIN_EF2ON_C39//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C39/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:24 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.for.1825-2792.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.1825-2792.gi%7C284086942%7Cgb%7CEFC40615%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.for.4896-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4896-6250.gi%7C284089546%7Cgb%7CEFC43203%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.for.4911-6250.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.4911-6250.gi%7C284095488%7Cgb%7CEFC49119%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.for.6461-7958.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.6461-7958.gi%7C284097237%7Cgb%7CEFC50864%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.for.7493-8939.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.7493-8939.gi%7C284084860%7Cgb%7CEFC38548%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.for.8310-9520.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.8310-9520.gi%7C284082861%7Cgb%7CEFC36571%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.for.9183-11023.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.9183-11023.gi%7C284093132%7Cgb%7CEFC46771%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.for.10478-12039.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10478-12039.gi%7C284089301%7Cgb%7CEFC42959%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.for.10805-12048.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.10805-12048.gi%7C284095143%7Cgb%7CEFC48775%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.for.13538-14646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.13538-14646.gi%7C284093567%7Cgb%7CEFC47204%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.for.15972-17740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.15972-17740.gi%7C284083404%7Cgb%7CEFC37108%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.for.16011-17746.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.16011-17746.gi%7C284088825%7Cgb%7CEFC42486%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.for.20282-21918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.20282-21918.gi%7C284084491%7Cgb%7CEFC38183%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.for.24892-25899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.24892-25899.gi%7C284083516%7Cgb%7CEFC37218%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.for.33859-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38447.gi%7C284083359%7Cgb%7CEFC37063%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.for.33862-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38664.gi%7C284082638%7Cgb%7CEFC36352%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.for.33859-38664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38664.gi%7C284086918%7Cgb%7CEFC40591%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.for.33835-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33835-38453.gi%7C284083579%7Cgb%7CEFC37281%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.for.33874-38615.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38615.gi%7C284096503%7Cgb%7CEFC50131%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.for.33862-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38447.gi%7C284091223%7Cgb%7CEFC44871%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.for.33859-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33859-38459.gi%7C284086695%7Cgb%7CEFC40370%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.for.33880-38616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38616.gi%7C284093963%7Cgb%7CEFC47599%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.for.33862-37772.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-37772.gi%7C284089381%7Cgb%7CEFC43039%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.for.33883-38447.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33883-38447.gi%7C284086532%7Cgb%7CEFC40208%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284083434%7Cgb%7CEFC37137%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.for.33874-38459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38459.gi%7C284084818%7Cgb%7CEFC38507%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.for.33862-38357.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38357.gi%7C284092043%7Cgb%7CEFC45687%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.for.33868-38453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38453.gi%7C284083990%7Cgb%7CEFC37687%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.for.33820-38636.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-38636.gi%7C284094052%7Cgb%7CEFC47687%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.for.33868-38435.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33868-38435.gi%7C284085363%7Cgb%7CEFC39047%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.for.33880-38607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38607.gi%7C284086873%7Cgb%7CEFC40547%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.for.33808-37841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33808-37841.gi%7C284083848%7Cgb%7CEFC37547%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.for.33862-38303.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33862-38303.gi%7C284092675%7Cgb%7CEFC46316%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.for.33874-38613.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33874-38613.gi%7C284085442%7Cgb%7CEFC39126%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.for.33880-38252.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33880-38252.gi%7C284083453%7Cgb%7CEFC37156%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.for.33820-37556.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.33820-37556.gi%7C284085964%7Cgb%7CEFC39644%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.for.38975-41324.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.38975-41324.gi%7C284094593%7Cgb%7CEFC48227%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.for.40930-43013.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.40930-43013.gi%7C284092016%7Cgb%7CEFC45660%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.for.41125-42953.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.41125-42953.gi%7C284096618%7Cgb%7CEFC50246%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.for.49360-50363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.49360-50363.gi%7C284093000%7Cgb%7CEFC46640%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.for.51149-54740.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54740.gi%7C284094695%7Cgb%7CEFC48328%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.for.51149-54521.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.51149-54521.gi%7C284087414%7Cgb%7CEFC41084%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284091446%7Cgb%7CEFC45093%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.for.55097-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55097-57597.gi%7C284094819%7Cgb%7CEFC48452%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.for.55241-57603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.55241-57603.gi%7C284084267%7Cgb%7CEFC37961%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.for.54986-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54986-57609.gi%7C284092327%7Cgb%7CEFC45969%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284082776%7Cgb%7CEFC36488%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.for.54956-57597.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54956-57597.gi%7C284084526%7Cgb%7CEFC38218%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085272%7Cgb%7CEFC38957%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085240%7Cgb%7CEFC38925%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.for.54887-57627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57627.gi%7C284085885%7Cgb%7CEFC39565%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C33694258%7Cgb%7CAAQ24867%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.for.54887-57609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.54887-57609.gi%7C284089387%7Cgb%7CEFC43045%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.for.59122-61977.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59122-61977.gi%7C284089144%7Cgb%7CEFC42803%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284082068%7Cgb%7CEFC35853%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.for.59086-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61917.gi%7C284084087%7Cgb%7CEFC37783%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.for.59083-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59083-61911.gi%7C284088982%7Cgb%7CEFC42642%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.for.59116-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62028.gi%7C284089876%7Cgb%7CEFC43531%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.for.59113-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59113-61911.gi%7C284083134%7Cgb%7CEFC36841%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.for.59047-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59047-62019.gi%7C284093774%7Cgb%7CEFC47410%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.for.59086-61956.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61956.gi%7C284087481%7Cgb%7CEFC41150%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.for.59212-61932.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59212-61932.gi%7C284086252%7Cgb%7CEFC39930%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.for.59116-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-62019.gi%7C284089785%7Cgb%7CEFC43440%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.for.59146-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59146-61911.gi%7C284089211%7Cgb%7CEFC42870%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.for.59059-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62019.gi%7C284084234%7Cgb%7CEFC37929%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284089683%7Cgb%7CEFC43339%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.for.59092-62016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62016.gi%7C284081057%7Cgb%7CEFC35279%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.for.59104-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59104-61917.gi%7C284093932%7Cgb%7CEFC47568%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284082314%7Cgb%7CEFC36048%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.for.59203-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59203-61941.gi%7C284087499%7Cgb%7CEFC41168%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.for.59119-62010.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59119-62010.gi%7C284094795%7Cgb%7CEFC48428%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.for.59116-61923.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61923.gi%7C284084505%7Cgb%7CEFC38197%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.for.59134-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59134-61917.gi%7C284082806%7Cgb%7CEFC36517%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.for.59092-62028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-62028.gi%7C284084837%7Cgb%7CEFC38526%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.for.59116-61968.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59116-61968.gi%7C284091590%7Cgb%7CEFC45236%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.for.59095-62019.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59095-62019.gi%7C284087889%7Cgb%7CEFC41556%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.for.59092-61917.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61917.gi%7C284084171%7Cgb%7CEFC37866%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.for.59107-62082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59107-62082.gi%7C284093137%7Cgb%7CEFC46776%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.for.59059-62067.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59059-62067.gi%7C284087305%7Cgb%7CEFC40976%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.for.59086-61962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59086-61962.gi%7C284092523%7Cgb%7CEFC46165%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.for.59092-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59092-61911.gi%7C284083624%7Cgb%7CEFC37325%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.for.59206-61941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.59206-61941.gi%7C284092041%7Cgb%7CEFC45685%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.for.60500-61911.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.60500-61911.gi%7C284080810%7Cgb%7CEFC35195%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.for.67410-68831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.67410-68831.gi%7C284092124%7Cgb%7CEFC45767%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.for.78206-80506.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.78206-80506.gi%7C284090008%7Cgb%7CEFC43662%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.for.80135-82254.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80135-82254.gi%7C284096915%7Cgb%7CEFC50542%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.for.80057-82221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.80057-82221.gi%7C284085103%7Cgb%7CEFC38789%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.for.84894-87733.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.84894-87733.gi%7C284095199%7Cgb%7CEFC48830%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.for.89200-90179.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89200-90179.gi%7C284090474%7Cgb%7CEFC44126%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.for.89823-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89823-91248.gi%7C284088600%7Cgb%7CEFC42263%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.for.89936-91248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89936-91248.gi%7C284089013%7Cgb%7CEFC42673%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.for.89820-91221.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89820-91221.gi%7C284089693%7Cgb%7CEFC43349%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.for.89826-91155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.89826-91155.gi%7C284088684%7Cgb%7CEFC42346%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.for.93196-95879.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.93196-95879.gi%7C284090665%7Cgb%7CEFC44316%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.for.96759-98430.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C39.96759-98430.gi%7C284095605%7Cgb%7CEFC49235%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 22
...processing 1 of 22
...processing 2 of 22
...processing 3 of 22
...processing 4 of 22
...processing 5 of 22
...processing 6 of 22
...processing 7 of 22
...processing 8 of 22
...processing 9 of 22
...processing 10 of 22
...processing 11 of 22
...processing 12 of 22
...processing 13 of 22
...processing 14 of 22
...processing 15 of 22
...processing 16 of 22
...processing 17 of 22
...processing 18 of 22
...processing 19 of 22
...trimming the rest
total clusters:23 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:23 now processing 0
...processing 0 of 11
...processing 1 of 11
...processing 2 of 11
...processing 3 of 11
...processing 4 of 11
...processing 5 of 11
...processing 6 of 11
...processing 7 of 11
...processing 8 of 11
...processing 9 of 11
...processing 10 of 11
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
total clusters:23 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:23 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 26
...processing 1 of 26
...processing 2 of 26
...processing 3 of 26
...processing 4 of 26
...processing 5 of 26
...processing 6 of 26
...processing 7 of 26
...processing 8 of 26
...processing 9 of 26
...processing 10 of 26
...processing 11 of 26
...processing 12 of 26
...processing 13 of 26
...processing 14 of 26
...processing 15 of 26
...processing 16 of 26
...processing 17 of 26
...processing 18 of 26
...processing 19 of 26
...processing 20 of 26
...processing 21 of 26
...processing 22 of 26
...trimming the rest
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
total clusters:21 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
total clusters:15 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 10
...processing 1 of 10
...processing 2 of 10
...processing 3 of 10
...processing 4 of 10
...processing 5 of 10
...processing 6 of 10
...processing 7 of 10
...processing 8 of 10
...processing 9 of 10
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:15 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:15 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 20
...processing 1 of 20
...processing 2 of 20
...processing 3 of 20
...processing 4 of 20
...processing 5 of 20
...processing 6 of 20
...processing 7 of 20
...processing 8 of 20
...processing 9 of 20
...processing 10 of 20
...processing 11 of 20
...processing 12 of 20
...processing 13 of 20
...processing 14 of 20
...processing 15 of 20
...processing 16 of 20
...processing 17 of 20
...processing 18 of 20
...processing 19 of 20
...trimming the rest
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 20
...processing 1 of 20
...processing 2 of 20
...processing 3 of 20
...processing 4 of 20
...processing 5 of 20
...processing 6 of 20
...processing 7 of 20
...processing 8 of 20
...processing 9 of 20
...processing 10 of 20
...processing 11 of 20
...processing 12 of 20
...processing 13 of 20
...processing 14 of 20
...processing 15 of 20
...processing 16 of 20
...processing 17 of 20
...processing 18 of 20
...processing 19 of 20
...trimming the rest
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
...processing 0 of 2
...processing 1 of 2
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
...processing 0 of 2
...processing 1 of 2
total clusters:29 now processing 0
total clusters:29 now processing 0
total clusters:29 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.6660-7758.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.10462-11848.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.13353-14446.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.14681-15653.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.20345-21718.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32435-33316.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39067-42944.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.45084-49037.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.59291-61882.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.80209-82114.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.88298-89260.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.92375-95723.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.97137-98274.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.533-4449.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.4956-6050.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.7628-10823.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.11496-13164.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.24994-25708.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.29572-30475.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.34007-38507.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.50769-54822.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.55086-57427.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.57834-59002.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.67587-68691.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.70350-71375.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.75324-80306.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.81948-83324.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.85060-87533.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.89219-91048.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.95379-96241.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.96958-98230.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.99602-100272.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C41
Length: 154535
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:4 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:2 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:1 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:8 current j:0
j_size:8 current j:1
j_size:8 current j:2
j_size:8 current j:3
j_size:8 current j:4
j_size:8 current j:5
j_size:8 current j:6
j_size:8 current j:7
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C41.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:5 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18484%7Chydroxyproline-rich.for.2187-3523.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.2187-3523.Ar_EST_120301b_c18484%7Chydroxyproline-rich.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1478%7Cring.for.4286-5745.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.4286-5745.Ar_EST_120301b_c1478%7Cring.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17193%7Cf-box.for.5269-6583.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.5269-6583.Ar_EST_120301b_c17193%7Cf-box.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4442%7Ceukaryotic.for.10165-11796.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10165-11796.Ar_EST_120301b_rep_c4442%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8843%7Cx-ray.for.7105-8533.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7105-8533.Ar_EST_120301b_c8843%7Cx-ray.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14364%7Ceukaryotic.for.7508-11779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7508-11779.Ar_EST_120301b_rep_c14364%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3817%7Cx-ray.for.7840-9618.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7840-9618.Ar_EST_120301b_c3817%7Cx-ray.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c9670%7Ceukaryotic.for.10491-11699.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10491-11699.Ar_EST_120301b_rep_c9670%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19424%7Cx-ray.for.7408-8427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7408-8427.Ar_EST_120301b_rep_c19424%7Cx-ray.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8252%7Cser.for.13210-14765.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.13210-14765.Ar_EST_120301b_c8252%7Cser.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11587%7Cpredicted.for.14122-15513.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14122-15513.Ar_EST_120301b_c11587%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3305%7Calpha-l-glutamate.for.16307-18409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16307-18409.Ar_EST_120301b_c3305%7Calpha-l-glutamate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11608%7Cribosomal.for.16177-17586.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16177-17586.Ar_EST_120301b_c11608%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8254%7Calpha-l-glutamate.for.17251-18334.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17251-18334.Ar_EST_120301b_c8254%7Calpha-l-glutamate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1594%7Cformate.for.18210-20004.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18210-20004.Ar_EST_120301b_c1594%7Cformate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9408%7Chypothetical.for.19279-21053.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.19279-21053.Ar_EST_120301b_c9408%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17501%7Csignal.for.21176-22828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.21176-22828.Ar_EST_120301b_c17501%7Csignal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6353%7Ceukaryotic.for.25430-27136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.25430-27136.Ar_EST_120301b_rep_c6353%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5611%7Ceukaryotic.for.24776-27122.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24776-27122.Ar_EST_120301b_rep_c5611%7Ceukaryotic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig227%7Czinc.for.26362-27835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.26362-27835.120301b_Contig227%7Czinc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20371%7Chypothetical.for.27387-29476.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.27387-29476.Ar_EST_120301b_c20371%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2180%7Cpredicted.for.28305-29601.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.28305-29601.Ar_EST_120301b_c2180%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c249%7Ccalmodulin.for.29478-30871.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29478-30871.Ar_EST_120301b_c249%7Ccalmodulin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19994%7Cacyl-.for.30216-31226.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30216-31226.Ar_EST_120301b_rep_c19994%7Cacyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1202%7Cwd-40.for.31015-32417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.31015-32417.120301b_Contig1202%7Cwd-40.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13644%7Cserine.for.30760-32079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30760-32079.Ar_EST_120301b_c13644%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13183%7C---NA---.for.33943-35220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.33943-35220.Ar_EST_120301b_c13183%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9362%7Cprotein.for.34412-35861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.34412-35861.Ar_EST_120301b_c9362%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c276%7Cprotein.for.35235-36619.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.35235-36619.Ar_EST_120301b_c276%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15761%7C---NA---.for.36991-38330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.36991-38330.Ar_EST_120301b_c15761%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8595%7C---NA---.for.38092-39496.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.38092-39496.Ar_EST_120301b_c8595%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14176%7Cdg2-90j1.for.39278-40527.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.39278-40527.Ar_EST_120301b_c14176%7Cdg2-90j1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17402%7Cprotein.for.40329-41323.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.40329-41323.Ar_EST_120301b_c17402%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15139%7C-.for.41265-42587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41265-42587.Ar_EST_120301b_c15139%7C-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18485%7Cmicrotubule-associated.for.41154-42264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41154-42264.Ar_EST_120301b_c18485%7Cmicrotubule-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2523%7Cnuclear.for.41989-43342.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.41989-43342.Ar_EST_120301b_c2523%7Cnuclear.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1188%7Ccytoplasmic.for.43231-44554.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.43231-44554.Ar_EST_120301b_c1188%7Ccytoplasmic.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15535%7Cmajor.for.44232-45248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44232-45248.Ar_EST_120301b_c15535%7Cmajor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13992%7Cmajor.for.45074-46353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.45074-46353.Ar_EST_120301b_c13992%7Cmajor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5585%7Cbax.for.51794-53356.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.51794-53356.Ar_EST_120301b_rep_c5585%7Cbax.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig746%7Chypothetical.for.53525-54999.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.53525-54999.120301b_Contig746%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10918%7Csomething.for.56330-57676.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.56330-57676.Ar_EST_120301b_c10918%7Csomething.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11928%7Csomething.for.57498-59333.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57498-59333.Ar_EST_120301b_c11928%7Csomething.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17010%7Cleucine.for.57436-58393.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.57436-58393.Ar_EST_120301b_c17010%7Cleucine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c211%7Cbeta-.for.65659-67125.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.65659-67125.Ar_EST_120301b_c211%7Cbeta-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig490%7Cg-protein.for.66457-68388.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66457-68388.120301b_Contig490%7Cg-protein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig117%7Cheat.for.67633-70247.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67633-70247.120301b_Contig117%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2590%7Cmethyltransferase.for.70139-71511.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70139-71511.Ar_EST_120301b_c2590%7Cmethyltransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17137%7Chypothetical.for.70937-72211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.70937-72211.Ar_EST_120301b_c17137%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12127%7Cbag.for.72882-74181.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.72882-74181.Ar_EST_120301b_c12127%7Cbag.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11701%7Calpha.for.73539-75194.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.73539-75194.Ar_EST_120301b_c11701%7Calpha.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11059%7C---NA---.for.74908-75962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.74908-75962.Ar_EST_120301b_c11059%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14862%7Cpredicted.for.75374-76344.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75374-76344.Ar_EST_120301b_c14862%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.for.75748-78779.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75748-78779.Ar_EST_120301b_c21%7Ctrehalose-6-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.for.77246-78385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77246-78385.Ar_EST_120301b_rep_c15607%7C-trehalose-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15030%7C-trehalose-phosphate.for.75564-76902.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75564-76902.Ar_EST_120301b_c15030%7C-trehalose-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16719%7C---NA---.for.78376-79899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.78376-79899.Ar_EST_120301b_c16719%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4679%7Ccalcium.for.79728-81631.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79728-81631.Ar_EST_120301b_rep_c4679%7Ccalcium.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6123%7Ccalcium-binding.for.79688-81126.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79688-81126.Ar_EST_120301b_rep_c6123%7Ccalcium-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c192%7C40s.for.82195-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82195-83413.Ar_EST_120301b_c192%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19660%7C40s.for.82241-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82241-83413.Ar_EST_120301b_rep_c19660%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20551%7C40s.for.82228-83501.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82228-83501.Ar_EST_120301b_rep_c20551%7C40s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19968%7Cribosomal.for.82233-83376.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82233-83376.Ar_EST_120301b_rep_c19968%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19279%7Cgolgi.for.83109-84409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83109-84409.Ar_EST_120301b_c19279%7Cgolgi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12101%7Cgolgi.for.83398-84791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83398-84791.Ar_EST_120301b_c12101%7Cgolgi.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14459%7Cterminal.for.85226-86142.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.85226-86142.Ar_EST_120301b_c14459%7Cterminal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11091%7Ccell.for.87167-88894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.87167-88894.Ar_EST_120301b_c11091%7Ccell.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.for.91301-92567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91301-92567.Ar_EST_120301b_c16049%7Cn-acetylglucosaminylphosphatidylinositol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10463%7Cpolycystin.for.93843-95353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.93843-95353.Ar_EST_120301b_c10463%7Cpolycystin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19139%7C---NA---.for.97938-99210.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97938-99210.Ar_EST_120301b_c19139%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19439%7C1106908803323.for.97484-98616.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97484-98616.Ar_EST_120301b_c19439%7C1106908803323.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.for.97690-99044.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.97690-99044.Ar_EST_120301b_c8788%7Cp02431_mmt-2407_g07_026.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18344%7Csjs.for.102945-104249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.102945-104249.Ar_EST_120301b_c18344%7Csjs.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11384%7Ctubby.for.103787-105337.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.103787-105337.Ar_EST_120301b_c11384%7Ctubby.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1737%7Cgaf.for.105107-106111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.105107-106111.Ar_EST_120301b_c1737%7Cgaf.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c764%7Cwd.for.108045-109340.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108045-109340.Ar_EST_120301b_c764%7Cwd.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig429%7Cprotein.for.108478-110082.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108478-110082.120301b_Contig429%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11559%7Csodium-coupled.for.109747-111803.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.109747-111803.Ar_EST_120301b_c11559%7Csodium-coupled.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.for.112569-113963.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112569-113963.Ar_EST_120301b_rep_c4314%7Cadp-ribosylation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c564%7Cribosomal.for.113229-114795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113229-114795.Ar_EST_120301b_c564%7Cribosomal.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6629%7Chypothetical.for.116163-117627.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116163-117627.Ar_EST_120301b_rep_c6629%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20242%7Chydra.for.116171-117286.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.116171-117286.Ar_EST_120301b_rep_c20242%7Chydra.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17271%7Chx350990.for.118102-119434.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.118102-119434.Ar_EST_120301b_c17271%7Chx350990.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13812%7Creinhardtii.for.123923-125193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.123923-125193.Ar_EST_120301b_c13812%7Creinhardtii.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8787%7Ctraf-type.for.127786-129861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.127786-129861.Ar_EST_120301b_c8787%7Ctraf-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1865%7Cprotein.for.130511-131973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130511-131973.Ar_EST_120301b_c1865%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17512%7Cpredicted.for.131444-132940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.131444-132940.Ar_EST_120301b_c17512%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10556%7Cpredicted.for.132788-134373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.132788-134373.Ar_EST_120301b_c10556%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig718%7Cci569863.for.134029-135481.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134029-135481.120301b_Contig718%7Cci569863.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2633%7Cprotein.for.134795-136208.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.134795-136208.Ar_EST_120301b_c2633%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16910%7Cabc.for.137462-139213.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.137462-139213.Ar_EST_120301b_c16910%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1871%7Catp-binding.for.139326-141444.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139326-141444.Ar_EST_120301b_c1871%7Catp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17554%7Cby908063.for.138639-140232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.138639-140232.Ar_EST_120301b_c17554%7Cby908063.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11060%7Cpredicted.for.141427-142899.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.141427-142899.Ar_EST_120301b_c11060%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13278%7Ca65o08n1.for.142316-143625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142316-143625.Ar_EST_120301b_c13278%7Ca65o08n1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17268%7C---NA---.for.142931-144237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.142931-144237.Ar_EST_120301b_c17268%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15928%7Cig.for.146738-148264.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.146738-148264.Ar_EST_120301b_c15928%7Cig.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2769%7Cprotein.for.149095-151248.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.149095-151248.Ar_EST_120301b_c2769%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.for.150499-151720.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.150499-151720.Ar_EST_120301b_c2370%7Cglycosylphosphatidylinositol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.for.151378-152573.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.151378-152573.Ar_EST_120301b_c13294%7Cglycosylphosphatidylinositol.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:72 now processing 0
total clusters:72 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
total clusters:72 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:40 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:35 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:43 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:26 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:49 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:44 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:49 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:36 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/9C/A0/AR_HYBRID_130113_TINTIN_EF2ON_C41//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C41/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:41 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.for.7123-9212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-9212.gi%7C284081903%7Cgb%7CEFC35733%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.for.7123-8168.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.7123-8168.gi%7C284084058%7Cgb%7CEFC37754%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.for.10243-11777.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.10243-11777.gi%7C284091255%7Cgb%7CEFC44903%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.for.14773-16385.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.14773-16385.gi%7C284089366%7Cgb%7CEFC43024%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.for.16319-18374.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.16319-18374.gi%7C284084895%7Cgb%7CEFC38583%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.for.17715-18874.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.17715-18874.gi%7C284090994%7Cgb%7CEFC44643%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.for.18398-20016.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18398-20016.gi%7C284092047%7Cgb%7CEFC45691%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.for.18434-19503.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18434-19503.gi%7C284081730%7Cgb%7CEFC35619%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.for.18383-20040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.18383-20040.gi%7C284084767%7Cgb%7CEFC38456%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.for.23275-24275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23275-24275.gi%7C284086665%7Cgb%7CEFC40340%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.for.23281-24302.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.23281-24302.gi%7C284086663%7Cgb%7CEFC40338%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.for.24971-27117.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.24971-27117.gi%7C284089940%7Cgb%7CEFC43594%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C1705567%7Csp%7CP53440%2E1%7CCALMF_NAEGR.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C284097162%7Cgb%7CEFC50789%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.for.29566-30728.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29566-30728.gi%7C284085072%7Cgb%7CEFC38759%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C311815490%7Cemb%7CCBX84382%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C206984671%7Cemb%7CCAR80909%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C458232%7Cgb%7CAAA81897%2E1%7C.for.29497-30869.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.29497-30869.gi%7C458232%7Cgb%7CAAA81897%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.for.30178-31220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.30178-31220.gi%7C284091622%7Cgb%7CEFC45268%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.for.44270-45567.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.44270-45567.gi%7C284081107%7Cgb%7CEFC35296%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.for.49527-51284.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.49527-51284.gi%7C284093209%7Cgb%7CEFC46848%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.for.66531-68353.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68353.gi%7C284092652%7Cgb%7CEFC46293%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.for.66531-68326.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66531-68326.gi%7C284084712%7Cgb%7CEFC38402%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.for.66540-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66540-68347.gi%7C284083518%7Cgb%7CEFC37220%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.for.66525-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66525-68335.gi%7C284095980%7Cgb%7CEFC49609%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.for.66957-68161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66957-68161.gi%7C284091782%7Cgb%7CEFC45427%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.for.66549-68335.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66549-68335.gi%7C284085503%7Cgb%7CEFC39186%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.for.67134-68098.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67134-68098.gi%7C284093388%7Cgb%7CEFC47026%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.for.66495-68329.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66495-68329.gi%7C284095344%7Cgb%7CEFC48975%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.for.66543-68347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.66543-68347.gi%7C284095754%7Cgb%7CEFC49384%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.for.67616-70365.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.67616-70365.gi%7C284087598%7Cgb%7CEFC41267%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.for.75463-77811.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.75463-77811.gi%7C284095546%7Cgb%7CEFC49176%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.for.77195-78546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.77195-78546.gi%7C284095547%7Cgb%7CEFC49177%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.for.79831-81624.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.79831-81624.gi%7C284091342%7Cgb%7CEFC44989%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.for.82221-83413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.82221-83413.gi%7C284092680%7Cgb%7CEFC46321%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.for.83361-84536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.83361-84536.gi%7C284096588%7Cgb%7CEFC50216%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.for.84362-86850.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.84362-86850.gi%7C284090846%7Cgb%7CEFC44496%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.for.88402-90836.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.88402-90836.gi%7C284089235%7Cgb%7CEFC42894%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.for.91109-92648.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.91109-92648.gi%7C284091855%7Cgb%7CEFC45500%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.for.96505-97541.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.96505-97541.gi%7C284087921%7Cgb%7CEFC41587%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.for.100754-101769.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.100754-101769.gi%7C284086204%7Cgb%7CEFC39882%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.for.104798-105909.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.104798-105909.gi%7C284088301%7Cgb%7CEFC41965%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.for.108070-110047.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.108070-110047.gi%7C284090924%7Cgb%7CEFC44573%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.for.111783-113222.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.111783-113222.gi%7C284097066%7Cgb%7CEFC50693%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.for.112604-113928.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113928.gi%7C284090632%7Cgb%7CEFC44283%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.for.112580-113916.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112580-113916.gi%7C284083438%7Cgb%7CEFC37141%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284085981%7Cgb%7CEFC39661%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.for.112604-113919.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.112604-113919.gi%7C284089356%7Cgb%7CEFC43014%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.for.113740-114929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.113740-114929.gi%7C284094385%7Cgb%7CEFC48019%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.for.115749-116791.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115749-116791.gi%7C284097074%7Cgb%7CEFC50701%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.for.115767-116794.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.115767-116794.gi%7C284084567%7Cgb%7CEFC38258%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.for.130730-131943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.130730-131943.gi%7C284093075%7Cgb%7CEFC46714%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.for.139599-140995.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C41.139599-140995.gi%7C284090726%7Cgb%7CEFC44376%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
total clusters:28 now processing 0
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
total clusters:25 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
total clusters:48 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:48 now processing 0
total clusters:48 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:34 now processing 0
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
total clusters:34 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.2386-3323.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.4485-6383.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.10364-11603.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.13401-14596.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.14972-16185.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.16376-18209.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.24975-26936.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.29677-30675.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.30959-31899.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.37033-43142.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.43430-44354.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.44431-46153.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.49726-51084.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.53724-54799.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.65858-68188.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.73071-73981.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.75107-78579.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.79887-81431.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.82420-83213.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.83308-86650.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.88601-90636.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.94042-95153.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.96704-97341.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.103144-104059.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.104997-105709.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.109946-111603.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.111961-114729.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.116362-117427.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/28_0.130710-132750.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/29_0.134159-136008.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/30_0.137661-141244.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/31_0.146931-148064.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/32_0.149294-151051.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/33_0.7226-9418.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/34_0.14321-15313.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/35_0.17914-20853.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/36_0.21355-22628.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/37_0.23480-24102.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/38_0.26561-29401.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/39_0.30377-31023.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/40_0.34142-36419.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/41_0.56529-59133.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/42_0.67815-70165.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/43_0.70338-72011.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/44_0.73731-74994.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/45_0.78575-79699.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/46_0.87346-88694.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/47_0.91308-92448.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/48_0.97683-99010.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/49_0.103986-105137.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/50_0.108244-109905.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/51_0.115948-116594.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/52_0.118285-119234.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/53_0.124122-129661.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/54_0.132987-134173.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/55_0.141626-144037.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/56_0.150698-152373.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C42
Length: 76433
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:1 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:3 current j:0
j_size:3 current j:1
j_size:3 current j:2
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C42.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:9 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:27 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:28 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:27 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:27 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:32 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:22 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:22 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:26 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:26 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.for.1-1406.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1406.Ar_EST_120301b_rep_c7774%7C030702kazb008692ht.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18851%7C---NA---.for.1-940.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-940.Ar_EST_120301b_c18851%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19024%7C---NA---.for.1-970.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-970.Ar_EST_120301b_c19024%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c18770%7Cloc407698.for.1-1451.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1-1451.Ar_EST_120301b_rep_c18770%7Cloc407698.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4948%7Cmyosin.for.10321-12607.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10321-12607.Ar_EST_120301b_rep_c4948%7Cmyosin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19625%7Cgtp-binding.for.8546-9603.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8546-9603.Ar_EST_120301b_rep_c19625%7Cgtp-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5732%7Cm.for.9794-11275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9794-11275.Ar_EST_120301b_rep_c5732%7Cm.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17320%7Cheavy.for.9960-11233.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.9960-11233.Ar_EST_120301b_rep_c17320%7Cheavy.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11257%7Cmyosin.for.8686-9748.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8686-9748.Ar_EST_120301b_rep_c11257%7Cmyosin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14762%7Cmyosin.for.13210-14193.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.13210-14193.Ar_EST_120301b_c14762%7Cmyosin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig338%7Cmyosin.for.7890-13060.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7890-13060.120301b_Contig338%7Cmyosin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20010%7Cpt030.for.10412-11566.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.10412-11566.Ar_EST_120301b_rep_c20010%7Cpt030.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13599%7Ceps15l1.for.8928-10003.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.8928-10003.Ar_EST_120301b_rep_c13599%7Ceps15l1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c280%7Ca.for.11708-14561.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.11708-14561.Ar_EST_120301b_c280%7Ca.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5072%7Cmyosin.for.7911-10427.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7911-10427.Ar_EST_120301b_rep_c5072%7Cmyosin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.for.14767-16470.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.14767-16470.Ar_EST_120301b_c9109%7Cinositol-pentakisphosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2562%7Camino.for.16482-18275.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16482-18275.Ar_EST_120301b_c2562%7Camino.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2007%7Camino.for.15884-17370.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.15884-17370.Ar_EST_120301b_c2007%7Camino.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11326%7Chypothetical.for.16353-17413.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16353-17413.Ar_EST_120301b_c11326%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12013%7Ccytochrome.for.19357-20363.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19357-20363.Ar_EST_120301b_rep_c12013%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13656%7Crrp12-like.for.21547-22901.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.21547-22901.Ar_EST_120301b_c13656%7Crrp12-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8608%7Cnuc173-domain-containing.for.23818-25377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.23818-25377.Ar_EST_120301b_c8608%7Cnuc173-domain-containing.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9977%7Crrp12-like.for.24622-26076.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.24622-26076.Ar_EST_120301b_c9977%7Crrp12-like.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15839%7Clucilia.for.27768-29114.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.27768-29114.Ar_EST_120301b_c15839%7Clucilia.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig969%7Cstructural.for.33495-35407.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.33495-35407.120301b_Contig969%7Cstructural.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8672%7Ccondensin.for.34640-36040.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.34640-36040.Ar_EST_120301b_c8672%7Ccondensin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11535%7Ce3.for.39167-40542.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39167-40542.Ar_EST_120301b_c11535%7Ce3.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13262%7Cunnamed.for.39805-41097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.39805-41097.Ar_EST_120301b_c13262%7Cunnamed.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.for.40444-41924.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40444-41924.Ar_EST_120301b_c11312%7Cpoly%28adp-ribose%29.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19596%7Chypothetical.for.42045-43366.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42045-43366.Ar_EST_120301b_c19596%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7308%7Cunnamed.for.42244-43364.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42244-43364.Ar_EST_120301b_rep_c7308%7Cunnamed.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig325%7Cregulatory.for.42802-44973.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42802-44973.120301b_Contig325%7Cregulatory.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c11048%7C26s.for.42818-43974.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42818-43974.Ar_EST_120301b_rep_c11048%7C26s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7492%7Cconserved.for.45877-46991.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46991.Ar_EST_120301b_rep_c7492%7Cconserved.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7479%7Cagn_rnc.for.45989-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45989-47063.Ar_EST_120301b_rep_c7479%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7508%7Cagn_rnc.for.45857-46841.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45857-46841.Ar_EST_120301b_rep_c7508%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7480%7Cagn_rnc.for.46091-47455.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46091-47455.Ar_EST_120301b_rep_c7480%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7509%7Cmucin.for.45434-46641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45434-46641.Ar_EST_120301b_rep_c7509%7Cmucin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig982%7Cras-related.for.45341-46536.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45341-46536.120301b_Contig982%7Cras-related.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig343%7Cson.for.45134-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45134-47099.120301b_Contig343%7Cson.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5597%7Ccre-clec-202.for.45109-46960.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46960.Ar_EST_120301b_rep_c5597%7Ccre-clec-202.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7743%7Ccapg.for.45109-46400.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46400.Ar_EST_120301b_rep_c7743%7Ccapg.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7494%7Chypothetical.for.46415-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47555.Ar_EST_120301b_rep_c7494%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16710%7Cascaris.for.46415-47537.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46415-47537.Ar_EST_120301b_rep_c16710%7Cascaris.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.for.46639-47581.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46639-47581.Ar_EST_120301b_rep_c19414%7Clusgc1ng-rp-234_a03_02apr2007_031.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7511%7C454.for.45483-46453.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45483-46453.Ar_EST_120301b_rep_c7511%7C454.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6388%7Cglycoside.for.45638-46638.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45638-46638.Ar_EST_120301b_rep_c6388%7Cglycoside.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c19937%7Cseverin.for.45116-46100.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45116-46100.Ar_EST_120301b_rep_c19937%7Cseverin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7495%7Cagn_rnc.for.46158-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46158-47433.Ar_EST_120301b_rep_c7495%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7483%7C---NA---.for.46372-47433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46372-47433.Ar_EST_120301b_rep_c7483%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5806%7Cagn_rnc.for.45932-46941.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45932-46941.Ar_EST_120301b_rep_c5806%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7496%7Cc08024b04sk.for.45501-46672.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45501-46672.Ar_EST_120301b_rep_c7496%7Cc08024b04sk.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c16396%7Cglycoprotein.for.45482-46646.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45482-46646.Ar_EST_120301b_rep_c16396%7Cglycoprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13573%7Cconserved.for.45147-46240.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45147-46240.Ar_EST_120301b_rep_c13573%7Cconserved.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20339%7Cprotein.for.45144-46424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46424.Ar_EST_120301b_rep_c20339%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig316%7Cpf11-1.for.45115-47057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45115-47057.120301b_Contig316%7Cpf11-1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7487%7Cagn_rnc.for.46182-47595.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46182-47595.Ar_EST_120301b_rep_c7487%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6183%7Cpf11-1.for.45491-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45491-47522.Ar_EST_120301b_rep_c6183%7Cpf11-1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14545%7Chypothetical.for.45965-47068.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45965-47068.Ar_EST_120301b_rep_c14545%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1387%7Cpf11-1.for.45128-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47072.120301b_Contig1387%7Cpf11-1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7470%7Cdc961434.for.45674-46577.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45674-46577.Ar_EST_120301b_rep_c7470%7Cdc961434.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c14022%7Chypothetical.for.46393-47555.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46393-47555.Ar_EST_120301b_rep_c14022%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7500%7Cagn_rnc.for.45877-46957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45877-46957.Ar_EST_120301b_rep_c7500%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7489%7Cagn_rnc.for.45655-46926.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45655-46926.Ar_EST_120301b_rep_c7489%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7476%7Cagn_rnc.for.46159-47569.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.46159-47569.Ar_EST_120301b_rep_c7476%7Cagn_rnc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7112%7Clikely.for.45218-47099.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45218-47099.Ar_EST_120301b_rep_c7112%7Clikely.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7490%7Cpf11-1.for.45848-47172.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45848-47172.Ar_EST_120301b_rep_c7490%7Cpf11-1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7505%7Cserine.for.45942-47187.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45942-47187.Ar_EST_120301b_rep_c7505%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7044%7Cbw637335.for.45144-46373.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45144-46373.Ar_EST_120301b_rep_c7044%7Cbw637335.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4836%7Cpf11-1.for.45128-47522.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45128-47522.Ar_EST_120301b_rep_c4836%7Cpf11-1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6893%7Cpf11-1.for.45110-47063.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-47063.Ar_EST_120301b_rep_c6893%7Cpf11-1.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17766%7C60s.for.45811-47072.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45811-47072.Ar_EST_120301b_rep_c17766%7C60s.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4017%7Ccre-clec-202.for.45109-46943.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45109-46943.Ar_EST_120301b_rep_c4017%7Ccre-clec-202.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7092%7Chypothetical.for.45110-46243.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45110-46243.Ar_EST_120301b_rep_c7092%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20418%7Cdc981051.for.45137-46306.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.45137-46306.Ar_EST_120301b_rep_c20418%7Cdc981051.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.for.48178-50188.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48178-50188.Ar_EST_120301b_rep_c4416%7Cmannose-1-phosphate.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10906%7Cset.for.49734-51197.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.49734-51197.Ar_EST_120301b_c10906%7Cset.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16929%7C---NA---.for.51104-52524.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51104-52524.Ar_EST_120301b_c16929%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1490%7Cagencourt_54728430.for.51937-53332.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.51937-53332.Ar_EST_120301b_c1490%7Cagencourt_54728430.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c990%7Ccaau.for.53479-54807.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53479-54807.Ar_EST_120301b_c990%7Ccaau.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1347%7C---NA---.for.53147-54553.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54553.120301b_Contig1347%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5238%7C---NA---.for.53147-54491.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53147-54491.Ar_EST_120301b_rep_c5238%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1370%7Cubiquitin.for.53182-54304.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.53182-54304.120301b_Contig1370%7Cubiquitin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c572%7Cfra0980.for.54258-55665.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54258-55665.Ar_EST_120301b_c572%7Cfra0980.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c824%7C---NA---.for.54999-56346.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.54999-56346.Ar_EST_120301b_c824%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14096%7Cprotein.for.59864-61124.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59864-61124.Ar_EST_120301b_c14096%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16701%7Celongation.for.63503-64957.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.63503-64957.Ar_EST_120301b_c16701%7Celongation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14311%7Cmajor.for.65108-66195.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.65108-66195.Ar_EST_120301b_c14311%7Cmajor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10866%7Cpiggybac.for.67346-69111.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67346-69111.Ar_EST_120301b_c10866%7Cpiggybac.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8355%7Cpiggybac.for.67322-68937.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.67322-68937.Ar_EST_120301b_c8355%7Cpiggybac.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9544%7Cmlp2991.for.72162-73645.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.72162-73645.Ar_EST_120301b_c9544%7Cmlp2991.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10994%7Cct751907.for.75607-76433.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.75607-76433.Ar_EST_120301b_c10994%7Cct751907.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:33 now processing 0
total clusters:33 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:33 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
...processing 0 of 22
...processing 1 of 22
...processing 2 of 22
...processing 3 of 22
...processing 4 of 22
...processing 5 of 22
...processing 6 of 22
...processing 7 of 22
...processing 8 of 22
...processing 9 of 22
...processing 10 of 22
...processing 11 of 22
...processing 12 of 22
...processing 13 of 22
...processing 14 of 22
...processing 15 of 22
...processing 16 of 22
...processing 17 of 22
...processing 18 of 22
...processing 19 of 22
...processing 20 of 22
...processing 21 of 22
total clusters:33 now processing 0
total clusters:33 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
total clusters:33 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:22 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:11 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:15 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:20 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:24 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:20 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:26 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:15 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:12 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/0C/F9/AR_HYBRID_130113_TINTIN_EF2ON_C42//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C42/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:14 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.for.1773-3681.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.1773-3681.gi%7C284084885%7Cgb%7CEFC38573%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.for.7920-14466.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7920-14466.gi%7C284085553%7Cgb%7CEFC39236%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.for.7932-14460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.7932-14460.gi%7C284094451%7Cgb%7CEFC48085%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.for.16062-18301.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16062-18301.gi%7C284084972%7Cgb%7CEFC38659%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.for.16209-18235.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.16209-18235.gi%7C284089951%7Cgb%7CEFC43605%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.for.17570-19460.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.17570-19460.gi%7C284096115%7Cgb%7CEFC49744%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.for.19232-20352.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.19232-20352.gi%7C284096480%7Cgb%7CEFC50108%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.for.31950-36420.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31950-36420.gi%7C284096114%7Cgb%7CEFC49743%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.for.31962-36417.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.31962-36417.gi%7C284084943%7Cgb%7CEFC38631%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.for.37513-38519.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.37513-38519.gi%7C284091903%7Cgb%7CEFC45547%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.for.40644-42565.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.40644-42565.gi%7C284096119%7Cgb%7CEFC49748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.for.43363-44942.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44942.gi%7C284092250%7Cgb%7CEFC45893%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.for.43363-44861.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43363-44861.gi%7C284082802%7Cgb%7CEFC36513%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.for.43231-44915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43231-44915.gi%7C284083285%7Cgb%7CEFC36990%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.for.42949-44954.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.42949-44954.gi%7C284086815%7Cgb%7CEFC40489%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.for.43381-44933.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43381-44933.gi%7C284095107%7Cgb%7CEFC48739%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.for.43324-44894.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43324-44894.gi%7C284092145%7Cgb%7CEFC45788%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.for.43342-44903.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43342-44903.gi%7C284086643%7Cgb%7CEFC40318%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.for.43339-44951.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43339-44951.gi%7C284090736%7Cgb%7CEFC44386%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.for.43186-44918.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43186-44918.gi%7C284089920%7Cgb%7CEFC43575%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.for.43201-44921.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.43201-44921.gi%7C284089547%7Cgb%7CEFC43204%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284084479%7Cgb%7CEFC38171%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.for.48200-50161.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.48200-50161.gi%7C284097121%7Cgb%7CEFC50748%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.for.59486-60759.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60759.gi%7C284095513%7Cgb%7CEFC49143%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.for.59498-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59498-60747.gi%7C284091174%7Cgb%7CEFC44822%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.for.59504-60747.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59504-60747.gi%7C284096632%7Cgb%7CEFC50259%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.for.56274-60438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56274-60438.gi%7C284096631%7Cgb%7CEFC50258%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.for.59486-60744.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.59486-60744.gi%7C284091239%7Cgb%7CEFC44887%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.for.56064-60891.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.56064-60891.gi%7C284087686%7Cgb%7CEFC41354%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.for.62094-65123.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.62094-65123.gi%7C284089822%7Cgb%7CEFC43477%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.for.64707-66232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C42.64707-66232.gi%7C284082936%7Cgb%7CEFC36645%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:11 now processing 0
total clusters:11 now processing 0
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
total clusters:11 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
...processing 0 of 8
...processing 1 of 8
...processing 2 of 8
...processing 3 of 8
...processing 4 of 8
...processing 5 of 8
...processing 6 of 8
...processing 7 of 8
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
total clusters:18 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:18 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 19
...processing 1 of 19
...processing 2 of 19
...processing 3 of 19
...processing 4 of 19
...processing 5 of 19
...processing 6 of 19
...processing 7 of 19
...processing 8 of 19
...processing 9 of 19
...processing 10 of 19
...processing 11 of 19
...processing 12 of 19
...processing 13 of 19
...processing 14 of 19
...processing 15 of 19
...processing 16 of 19
...processing 17 of 19
...processing 18 of 19
total clusters:16 now processing 0
total clusters:16 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
total clusters:16 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.274-1263.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.8848-9548.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.14966-16270.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.21746-22701.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.24017-25876.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.32149-36220.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.39366-40342.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.43001-44777.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.45867-47168.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.48367-49988.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.51249-53132.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.56263-60924.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.67521-68911.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.72361-73478.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.90-631.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.8089-14361.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.16083-19260.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.19431-20152.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.27967-28914.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.40004-43176.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.45295-47426.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.49931-50997.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.53346-56146.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.62293-66032.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
examining contents of the fasta file and run log
--Next Contig--
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: AR_HYBRID_130113_TINTIN_EF2ON_C43
Length: 92164
#---------------------------------------------------------------------
setting up GFF3 output and fasta chunks
doing repeat masking
running repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /scratch/maker_I9tXTM; /pica/sw/apps/bioinfo/RepeatMasker/4.0.1/kalkyl/RepeatMasker /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.all.rb -species all -dir /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0 -pa 1
#-------------------------------#
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner
#-------------------------------#
deleted:0 hits
doing blastx repeats
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/te_proteins%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner
#-------------------------------#
deleted:0 hits
collecting blastx repeatmasking
processing all repeats
in cluster::shadow_cluster...
sorting hits in shadow cluster...
j_size:2 current j:0
j_size:2 current j:1
...finished clustering.
preparing masked sequence
preparing ab-inits
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0 > /scratch/maker_I9tXTM/AR_HYBRID_130113_TINTIN_EF2ON_C43.abinit_masked.0.run0%2Ehmm.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
gathering ab-init output files
deleted:0 genes
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.0.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.1.blastn
#-------------------------------#
deleted:4 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.2.blastn
#-------------------------------#
deleted:1 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.3.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.4.blastn
#-------------------------------#
deleted:5 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.5.blastn
#-------------------------------#
deleted:3 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.6.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.7.blastn
#-------------------------------#
deleted:2 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.8.blastn
#-------------------------------#
deleted:6 hits
doing blastn of ESTs
running blast search.
#--------- command -------------#
Widget::blastn:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastn -db /scratch/maker_I9tXTM/Acrasis_EST_20130422%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Acrasis_EST_20130422%2Efasta.blastn.temp_dir/Acrasis_EST_20130422%2Efasta.mpi.10.9.blastn
#-------------------------------#
deleted:5 hits
collecting blastn reports
in cluster::shadow_cluster...
...finished clustering.
polishig ESTs
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17092%7Cfp188883.for.3526-4473.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.3526-4473.Ar_EST_120301b_c17092%7Cfp188883.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13677%7Cccab.for.5252-6612.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.5252-6612.Ar_EST_120301b_c13677%7Cccab.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c14518%7Cct749901.for.7990-9313.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7990-9313.Ar_EST_120301b_c14518%7Cct749901.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9288%7Cam569745.for.7381-8837.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.7381-8837.Ar_EST_120301b_c9288%7Cam569745.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4141%7Cand.for.9566-11196.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9566-11196.Ar_EST_120301b_rep_c4141%7Cand.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6063%7Cand.for.9750-11028.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9750-11028.Ar_EST_120301b_rep_c6063%7Cand.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15157%7Cfs534783.for.12578-13795.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.12578-13795.Ar_EST_120301b_c15157%7Cfs534783.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17200%7Ctetratricopeptide.for.13047-14232.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.13047-14232.Ar_EST_120301b_c17200%7Ctetratricopeptide.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13584%7Cpinus.for.14744-15962.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14744-15962.Ar_EST_120301b_c13584%7Cpinus.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3070%7C---NA---.for.14732-16014.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.14732-16014.Ar_EST_120301b_c3070%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9766%7Cperoxiredoxin.for.17496-18964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.17496-18964.Ar_EST_120301b_c9766%7Cperoxiredoxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10584%7Ccytochrome.for.18605-19915.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.18605-19915.Ar_EST_120301b_c10584%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig463%7Calcohol.for.19343-21211.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19343-21211.120301b_Contig463%7Calcohol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4099%7Calcohol.for.19322-21212.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.19322-21212.Ar_EST_120301b_rep_c4099%7Calcohol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18166%7Ccopper.for.23025-24216.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.23025-24216.Ar_EST_120301b_c18166%7Ccopper.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9326%7Cabc.for.25002-26391.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25002-26391.Ar_EST_120301b_c9326%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12338%7Cabc.for.26196-27884.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26196-27884.Ar_EST_120301b_c12338%7Cabc.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7977%7Cprotein.for.28339-30585.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28339-30585.Ar_EST_120301b_c7977%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c13552%7Ccytochrome.for.30161-31786.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.30161-31786.Ar_EST_120301b_c13552%7Ccytochrome.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1677%7Crhogef.for.33450-34814.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.33450-34814.Ar_EST_120301b_c1677%7Crhogef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c20340%7Cmembrane.for.32541-33655.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.32541-33655.Ar_EST_120301b_rep_c20340%7Cmembrane.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig1340%7Crhogef.for.31943-34641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.31943-34641.120301b_Contig1340%7Crhogef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.for.35037-36828.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.35037-36828.Ar_EST_120301b_c3406%7Cnucleoside-diphosphate-sugar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c8532%7Cau287079.for.37076-38097.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.37076-38097.Ar_EST_120301b_c8532%7Cau287079.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12209%7Cacetyl-.for.38502-39630.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.38502-39630.Ar_EST_120301b_c12209%7Cacetyl-.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18018%7C---NA---.for.39325-40402.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.39325-40402.Ar_EST_120301b_c18018%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c12991%7Calpha-tubulin.for.40091-41311.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.40091-41311.Ar_EST_120301b_rep_c12991%7Calpha-tubulin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c17425%7Crapamycin.for.44284-45658.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44284-45658.Ar_EST_120301b_rep_c17425%7Crapamycin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16058%7Cserine.for.45035-46459.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.45035-46459.Ar_EST_120301b_c16058%7Cserine.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2918%7Cphosphatidylinositol.for.46079-47673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.46079-47673.Ar_EST_120301b_c2918%7Cphosphatidylinositol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18515%7Cprotein.for.47799-49079.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.47799-49079.Ar_EST_120301b_c18515%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c12339%7Cphosphatidylinositol.for.48446-49831.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.48446-49831.Ar_EST_120301b_c12339%7Cphosphatidylinositol.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c10083%7Ctor.for.50097-52131.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.50097-52131.Ar_EST_120301b_c10083%7Ctor.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c17125%7Cfk506.for.51445-52972.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.51445-52972.Ar_EST_120301b_c17125%7Cfk506.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c609%7Ctranslation.for.55264-57136.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55264-57136.Ar_EST_120301b_c609%7Ctranslation.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16114%7Cpentein-type.for.56590-57910.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56590-57910.Ar_EST_120301b_c16114%7Cpentein-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15590%7Cggdef.for.59052-60296.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59052-60296.Ar_EST_120301b_c15590%7Cggdef.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c11620%7Chypothetical.for.59484-60929.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.59484-60929.Ar_EST_120301b_c11620%7Chypothetical.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16515%7C---NA---.for.60825-62078.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.60825-62078.Ar_EST_120301b_c16515%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4560%7Cmember.for.62938-64381.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62938-64381.Ar_EST_120301b_rep_c4560%7Cmember.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c20266%7Cdrug.for.61501-63752.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61501-63752.Ar_EST_120301b_c20266%7Cdrug.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.for.64403-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64403-66155.Ar_EST_120301b_rep_c5804%7Cbeta-arrestin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c6687%7Cpredicted.for.64370-65546.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64370-65546.Ar_EST_120301b_rep_c6687%7Cpredicted.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.for.64168-66155.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64168-66155.Ar_EST_120301b_rep_c4372%7Cbeta-arrestin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c13910%7C---NA---.for.64304-65220.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.64304-65220.Ar_EST_120301b_rep_c13910%7C---NA---.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2549%7Cthioredoxin.for.66566-68310.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.66566-68310.Ar_EST_120301b_c2549%7Cthioredoxin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15315%7Crna-binding.for.67791-68961.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67791-68961.Ar_EST_120301b_c15315%7Crna-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2976%7Crna-binding.for.68438-70469.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.68438-70469.Ar_EST_120301b_c2976%7Crna-binding.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c3634%7Czz-type.for.70147-71611.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70147-71611.Ar_EST_120301b_c3634%7Czz-type.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c2887%7Cubiquitin-associated.for.70584-72038.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70584-72038.Ar_EST_120301b_c2887%7Cubiquitin-associated.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig323%7Ctubulin.for.73278-75377.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75377.120301b_Contig323%7Ctubulin.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c15599%7Cpopulus.for.74929-76348.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74929-76348.Ar_EST_120301b_c15599%7Cpopulus.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_rep_c7031%7Cheat.for.76336-77895.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.76336-77895.Ar_EST_120301b_rep_c7031%7Cheat.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c16987%7Cflagellar.for.77326-78609.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77326-78609.Ar_EST_120301b_c16987%7Cflagellar.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c9635%7Cgdp-man%3Aman.for.79655-81480.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79655-81480.Ar_EST_120301b_c9635%7Cgdp-man%3Aman.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19551%7Caspargine-linked.for.80083-81464.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.80083-81464.Ar_EST_120301b_c19551%7Caspargine-linked.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c1696%7Ctrna.for.81261-82761.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81261-82761.Ar_EST_120301b_c1696%7Ctrna.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c7744%7Cprotein.for.81867-83835.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.81867-83835.Ar_EST_120301b_c7744%7Cprotein.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c18655%7Cmethyltransferase.for.82807-84315.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82807-84315.Ar_EST_120301b_c18655%7Cmethyltransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/Ar_EST_120301b_c19904%7Cmethyltransferase.for.82712-84249.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.82712-84249.Ar_EST_120301b_c19904%7Cmethyltransferase.e.exonerate
#-------------------------------#
running est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/120301b_Contig233%7Cphospholipase.for.86209-88251.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.86209-88251.120301b_Contig233%7Cphospholipase.e.exonerate
#-------------------------------#
cleaning blastn...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:40 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:40 now processing 0
flattening EST clusters
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.0 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:38 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.1 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.1.blastx
#-------------------------------#
deleted:38 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.2 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.2.blastx
#-------------------------------#
deleted:38 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.3 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.3.blastx
#-------------------------------#
deleted:30 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.4 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.4.blastx
#-------------------------------#
deleted:49 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.5 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.5.blastx
#-------------------------------#
deleted:38 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.6 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.6.blastx
#-------------------------------#
deleted:31 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.7 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.7.blastx
#-------------------------------#
deleted:40 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.8 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.8.blastx
#-------------------------------#
deleted:41 hits
doing blastx of proteins
running blast search.
#--------- command -------------#
Widget::blastx:
/sw/apps/bioinfo/blast/2.2.28+/milou/bin/blastx -db /scratch/maker_I9tXTM/Naegleria_proteome%2Efasta.mpi.10.9 -query /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /gulo/glob/saneash/acrasis_makerv2.28/run1/re-run0/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708.maker.output/AR_Hybrid_X2k_Y33_Z200_redundant_remove_130708_datastore/98/1B/AR_HYBRID_130113_TINTIN_EF2ON_C43//theVoid.AR_HYBRID_130113_TINTIN_EF2ON_C43/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.0.Naegleria_proteome%2Efasta.blastx.temp_dir/Naegleria_proteome%2Efasta.mpi.10.9.blastx
#-------------------------------#
deleted:36 hits
collecting blastx reports
in cluster::shadow_cluster...
...finished clustering.
polishing proteins
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.for.9746-11154.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.9746-11154.gi%7C284097056%7Cgb%7CEFC50683%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.for.21982-23057.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.21982-23057.gi%7C284090825%7Cgb%7CEFC44475%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.for.25245-27535.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25245-27535.gi%7C284084884%7Cgb%7CEFC38572%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.for.25005-27712.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.25005-27712.gi%7C284090115%7Cgb%7CEFC43768%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.for.24999-27664.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27664.gi%7C284085735%7Cgb%7CEFC39417%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.for.26056-27625.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26056-27625.gi%7C284096910%7Cgb%7CEFC50537%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.for.26047-27437.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26047-27437.gi%7C284096078%7Cgb%7CEFC49707%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.for.26059-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26059-27559.gi%7C284094270%7Cgb%7CEFC47905%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.for.24999-27673.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27673.gi%7C284083704%7Cgb%7CEFC37404%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.for.24999-27682.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.24999-27682.gi%7C284094259%7Cgb%7CEFC47894%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.for.26065-27559.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.26065-27559.gi%7C284094721%7Cgb%7CEFC48354%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.for.28324-29819.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28324-29819.gi%7C284082506%7Cgb%7CEFC36223%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.for.28264-30386.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.28264-30386.gi%7C284089855%7Cgb%7CEFC43510%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.for.42347-43347.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.42347-43347.gi%7C284081402%7Cgb%7CEFC35430%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.for.43208-44964.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.43208-44964.gi%7C284096798%7Cgb%7CEFC50425%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.for.44214-52634.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.44214-52634.gi%7C284088248%7Cgb%7CEFC41913%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.for.55818-57080.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57080.gi%7C284084309%7Cgb%7CEFC38003%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.for.55818-57092.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.55818-57092.gi%7C284084448%7Cgb%7CEFC38141%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.for.56577-58330.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.56577-58330.gi%7C284092108%7Cgb%7CEFC45751%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.for.57943-58856.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.57943-58856.gi%7C284088691%7Cgb%7CEFC42353%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.for.61596-63641.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61596-63641.gi%7C284091203%7Cgb%7CEFC44851%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.for.61605-63584.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61605-63584.gi%7C284083474%7Cgb%7CEFC37177%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.for.61889-63587.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.61889-63587.gi%7C284083969%7Cgb%7CEFC37667%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.for.63133-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63133-64462.gi%7C284096866%7Cgb%7CEFC50493%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.for.63169-64438.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64438.gi%7C284093204%7Cgb%7CEFC46843%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.for.63118-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64262.gi%7C284095151%7Cgb%7CEFC48783%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.for.62968-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.62968-64462.gi%7C284095231%7Cgb%7CEFC48862%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.for.63139-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63139-64462.gi%7C284095060%7Cgb%7CEFC48692%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.for.63148-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63148-64262.gi%7C284085175%7Cgb%7CEFC38861%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.for.63118-64214.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63118-64214.gi%7C284081592%7Cgb%7CEFC35538%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.for.63145-64462.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63145-64462.gi%7C284087063%7Cgb%7CEFC40735%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.for.63169-64262.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.63169-64262.gi%7C284089507%7Cgb%7CEFC43164%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.for.67167-68206.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.67167-68206.gi%7C284092547%7Cgb%7CEFC46189%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.for.70141-71237.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70141-71237.gi%7C284093081%7Cgb%7CEFC46720%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.for.70081-72452.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.70081-72452.gi%7C284091177%7Cgb%7CEFC44825%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.for.72364-73424.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.72364-73424.gi%7C284096878%7Cgb%7CEFC50505%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C464854%7Csp%7CP34108%2E1%7CTBB_NAEGR.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.for.73335-75325.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73335-75325.gi%7C284086940%7Cgb%7CEFC40613%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C9737%7Cemb%7CCAA78362%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C9737%7Cemb%7CCAA78362%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.for.73287-74890.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73287-74890.gi%7C284086828%7Cgb%7CEFC40502%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284082800%7Cgb%7CEFC36511%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284086082%7Cgb%7CEFC39761%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.for.73278-75409.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73278-75409.gi%7C284091464%7Cgb%7CEFC45110%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.for.73347-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73347-75412.gi%7C284084286%7Cgb%7CEFC37980%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.for.74148-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.74148-75412.gi%7C15082214%7Cgb%7CAAK84066%2E1%7CAF401641_1.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C829213%7Cemb%7CCAA56940%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C829213%7Cemb%7CCAA56940%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284083707%7Cgb%7CEFC37407%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.for.73326-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73326-75412.gi%7C284083068%7Cgb%7CEFC36775%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.for.73320-75412.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.73320-75412.gi%7C284084695%7Cgb%7CEFC38385%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.for.77239-78596.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.77239-78596.gi%7C284094548%7Cgb%7CEFC48182%2E1%7C.p.exonerate
#-------------------------------#
running exonerate search.
#--------- command -------------#
Widget::exonerate::protein2genome:
/pica/sw/apps/bioinfo/exonerate/2.2.0/kalkyl/bin/exonerate -q /scratch/maker_I9tXTM/0/gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.for.79553-81709.0.fasta -t /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /scratch/maker_I9tXTM/0/AR_HYBRID_130113_TINTIN_EF2ON_C43.79553-81709.gi%7C284094208%7Cgb%7CEFC47843%2E1%7C.p.exonerate
#-------------------------------#
cleaning blastx...
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:14 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:14 now processing 0
total clusters:14 now processing 0
total clusters:14 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:14 now processing 0
total clusters:14 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 9
...processing 1 of 9
...processing 2 of 9
...processing 3 of 9
...processing 4 of 9
...processing 5 of 9
...processing 6 of 9
...processing 7 of 9
...processing 8 of 9
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:12 now processing 0
total clusters:12 now processing 0
...processing 0 of 13
...processing 1 of 13
...processing 2 of 13
...processing 3 of 13
...processing 4 of 13
...processing 5 of 13
...processing 6 of 13
...processing 7 of 13
...processing 8 of 13
...processing 9 of 13
...processing 10 of 13
...processing 11 of 13
...processing 12 of 13
total clusters:12 now processing 0
flattening protein clusters
prepare section files
processing the chunk divide
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
total clusters:9 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:9 now processing 0
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
...processing 0 of 2
...processing 1 of 2
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 5
...processing 1 of 5
...processing 2 of 5
...processing 3 of 5
...processing 4 of 5
...processing 0 of 2
...processing 1 of 2
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 3
...processing 1 of 3
...processing 2 of 3
total clusters:27 now processing 0
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
...processing 0 of 7
...processing 1 of 7
...processing 2 of 7
...processing 3 of 7
...processing 4 of 7
...processing 5 of 7
...processing 6 of 7
total clusters:27 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
...processing 0 of 6
...processing 1 of 6
...processing 2 of 6
...processing 3 of 6
...processing 4 of 6
...processing 5 of 6
total clusters:27 now processing 0
total clusters:27 now processing 0
total clusters:27 now processing 0
...processing 0 of 2
...processing 1 of 2
total clusters:27 now processing 0
...processing 0 of 4
...processing 1 of 4
...processing 2 of 4
...processing 3 of 4
total clusters:27 now processing 0
in cluster::shadow_cluster...
...finished clustering.
annotating transcripts
Making transcripts
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/0_0.7580-9113.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/1_0.17695-18764.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/2_0.35236-36628.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/3_0.40264-41111.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/4_0.43407-44764.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/5_0.56776-58130.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/6_0.61024-63552.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -plus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/7_0.70280-72252.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/8_0.3725-4273.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/9_0.5451-6412.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/10_0.9846-10954.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/11_0.12777-14032.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/12_0.14931-15844.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/13_0.18804-21022.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/14_0.23224-24016.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/15_0.25198-27684.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/16_0.28463-31586.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/17_0.32142-34623.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/18_0.44413-52772.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/19_0.59251-60729.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/20_0.63132-64321.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/21_0.64367-65955.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/22_0.66765-70269.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/23_0.72563-73227.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding10.20.30.40.50.60.70.80.90100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/24_0.73477-76148.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/25_0.77438-78411.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/26_0.79752-84119.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
running snap.
#--------- command -------------#
Widget::snap:
/pica/sw/apps/bioinfo/snap/2013-02-16/kalkyl/snap -minus /home/saneash/glob/acrasis_makerv2.28/run0/snap_training/run0.hmm -xdef /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.xdef.snap /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap.fasta > /scratch/maker_I9tXTM/0/27_0.86408-88051.run0.hmm.auto_annotator.snap
#-------------------------------#
scoring....decoding.10.20.30.40.50.60.70.80.90.100 done
deleted:0 genes
clustering transcripts into genes for annotations
Processing transcripts into genes
choosing best annotation set
Choosing best annotations
processing chunk output
processing contig output
Maker is now finished!!!
[saneash at milou2 re-run0]$
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