[maker-devel] regarding MAKER

[Carson Holt]

Hi Nadita,

You appear to be using input files with spaces in their names.  It’s best
to avoid whitespace in file names for linux based programs, as they will
not always be interpreted correctly.

Thanks,
Carson


On 1/23/14, 3:23 AM, "Nandita Pasari" <nandita at icgeb.res.in> wrote:

>
>Sir,
>
>I am trying to run maker from bin.
>I was successful in running the example data but as I proceeded to a
>second run from the bin folder I am getting an error as follows:
>
>
>STATUS: Parsing control files...
>STATUS: Processing and indexing input FASTA files...
>mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10.0/'
>is not a directory
>mv: target `435.maker.output/mpi_blastdb/te_proteins%2Efasta.mpi.10/' is
>not a directory
>ERROR: SplitDB not created correctly
>
> at /home/shams/Downloads/maker/bin/../lib/GI.pm line 1116.
>	GI::split_db("/home/shams/Downloads/maker/data/te_proteins.fasta",
>"protein", 10, "/home/shams/Downloads/maker/bin/contig
>435.maker.output/mpi_b"..., "C") called at maker line 518
>--> rank=NA, hostname=shams-ThinkCentre-M90p
>
>How can this be rectified?
>
>Nandita Pasari
>Pre Doctoral Fellow
>Synthetic Biology and Biofuels Group
>ICGEB
>New Delhi
>