[maker-devel] Maker output

[Carson Holt]

See the MAKER 2014 GMOD tutorial -->
http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_
GMOD_Online_Training_2014
Also watch accompanying video --> http://youtu.be/uA96tSSaqLk

Results will be in GFF3 and FASTA format.  The GFF3 file contains the
location of structure relative to the assembly (exon/CDS/UTR).  The FASTA
file contains the sequence (transcript/protein).  There will be separate
files for each contig.  Use gff3_merge and fasta_merge to generate merged
genome wide GFF3 and FASTA files.

An explanation of GFF3 format is here -->
http://www.sequenceontology.org/gff3.shtml

Thanks,
Carson




On 7/3/14, 8:45 AM, "Rajesh Reddy Bommareddy"
<rajesh.bommareddy at tu-harburg.de> wrote:

>Dear Maker group
>
>I have run the example files provided with maker. But i am unable to
>understand the output. Where can i find the information about exons,
>CDS, protein sequence of the predicted CDS or mRNA and the predicted
>protein name for each contig?
>
>
>Thanks and Regards
>-- 
>M.Sc. Rajesh Reddy Bommareddy
>Institute of Bioprocess and Biosystems Engineering
>Hamburg University of Technology(TUHH)
>Denikestrasse 15, 20171 Hamburg
>GERMANY.
>e.mail: rajesh.bommareddy at tu-harburg.de
>Phone:+4940428784011
>Mobile:+4917663673522
>
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