[maker-devel] Repeatmasked genome

[Marc Höppner]

Hi,

this may be an odd question, but I was wondering where, if at all, Maker reports the repeat-masked genome sequence? As far as I can tell the fasta sequences included in the gff annotation are unmasked (?) or at least not softmasked. I guess it wouldn’t be too hard to take the repeat masker features and use them to soft mask the assembly, but still...

Regards,

Marc


Marc P. Hoeppner, PhD

Department for Medical Biochemistry and Microbiology
Uppsala University, Sweden
marc.hoeppner at imbim.uu.se