[maker-devel] Augustus compilation

[Sujai]

Hi Mike

Thanks for the super prompt response.

I am on a cluster where I can't install libboost-dev. However, boost
is on the cluster (as I wrote, it is compiled in the
/system/software/linux-x86_64/lib/boost/1_55_0/lib directory) so is my
modification to the Makefile below correct, or is there something else
I need to do?

    LIBS    = -L/system/software/linux-x86_64/lib/boost/1_55_0/lib
-lboost_iostreams -lboost_system -lboost_filesystem

Cheers,

- Sujai

On 4 June 2014 14:31, Michael Thon <mike.thon at gmail.com> wrote:
> Hi - Yes it the latest version of augustus needs the boost library.  If you're on linux you should be able to install it through the package manager.  its called libboost-dev or some such thing.
>
> -Mike
>
> On Jun 4, 2014, at 2:26 PM, Sujai <sujaikumar at gmail.com> wrote:
>
>> Hi all
>>
>> I've installed older versions of Maker (up to 2.28) before successfully.
>>
>> I was trying to install maker 2.31.6 on a new cluster and decided to
>> use the built in installers for the dependencies.
>>
>> Unfortunately
>>
>>    ./Build augustuc
>>
>> gives this error:
>>
>> Unpacking augustus tarball...
>> Configuring augustus...
>> g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2   -o genbank.o
>> genbank.cc -I../include
>> g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2   -o properties.o
>> properties.cc -I../include
>> properties.cc: In static member function 'static void
>> Properties::init(int, char**)':
>> properties.cc:349:25: error: 'boost::filesystem::path' has no member
>> named 'native'
>>      configPath = cpath.native();
>>                         ^
>> properties.cc: In function 'boost::filesystem::path findLocationOfSelfBinary()':
>> properties.cc:615:10: error: 'read_symlink' is not a member of
>> 'boost::filesystem'
>>  bpath = boost::filesystem::read_symlink(bpath);
>>          ^
>> make: *** [properties.o] Error 1
>>
>> ERROR: Failed installing augustus, now cleaning installation path...
>> You may need to install augustus manually.
>>
>> ----
>>
>> Would anyone have any suggestions for how to fix this? I've tried
>> editing the ../exe/augustus-3.0.2/src/Makefile line:
>>
>>    LIBS    = -lboost_iostreams -lboost_system -lboost_filesystem
>>
>> to add the path to my system boost lib:
>>
>>    LIBS    = -L/system/software/linux-x86_64/lib/boost/1_55_0/lib
>> -lboost_iostreams -lboost_system -lboost_filesystem
>>
>> and then running make from inside ../exe/augustus-3.0.2/src but I get
>> the same error again
>>
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>