[maker-devel] Alternate translation table

[Carson Holt]

Sorry. MAKER doesn't have an alternate codon table option.

--Carson


From:  Shaun Jackman <sjackman at gmail.com>
Reply-To:  Shaun Jackman <sjackman at gmail.com>
Date:  Wednesday, June 11, 2014 at 2:44 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] Alternate translation table

Hi, Carson. 

I’m annotating a plastid genome. It has spliced genes so I’m using
organism_type=eukaryotic. Its translation table however is 11 (Bacteria,
Archaea, prokaryotic viruses and chloroplast proteins). Is it possible to
change the translation table? I’m not doing any ab initio gene prediction,
only homology-based annotation using protein for coding genes and est for
non-coding genes. The sequences are from a very closely related species (99%
identity).

Cheers,
Shaun​
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