[maker-devel] maker snap output files

[dhivya arasappan]

Hello,

I ran maker after running SNAP ab initio prediction (following instructions from the maker tutorial).  It ran successfully and when I ran fasta_merge, I got several output fasta files. I’m unable to find information on the tutorial about interpreting these different files. I’m hoping one of you can help.

*maker.proteins.fasta
*maker.snap_masked.proteins.fasta
*maker.non_overlapping_ab_initio.proteins.fasta

What is the difference among these? They all have different number of sequences.

Similarly,with transcripts:

maker.non_overlapping_ab_initio.transcripts.fasta
maker.snap_masked.transcripts.fasta
maker.transcripts.fasta

Thanks
Dhivya


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