[maker-devel] Query on Hardware requirement

[Daniel Ence]

Hi Pradeep, 

I think Allpaths is developed by the Broad Institute, so you'd have to check their documentation for their system requirments. MAKER is installable on Linux and Mac OS X computers. The throughput you'll be able to achieve with MAKER depends on how many processors and how much RAM the machine has. To take advantage of MAKER's ability to parallelize the annotation process, you need some version of MPI installed on your machine. MAKER can try to install MPI for you, but a manual installation is usually required. 

I hope that helps. 

Thanks,
Daniel


Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: maker-devel [maker-devel-bounces at yandell-lab.org] on behalf of Pushplata Singh [pushplata.singh at teri.res.in]
Sent: Sunday, March 02, 2014 10:29 PM
To: maker-devel at yandell-lab.org
Cc: Pradeep Dahiya
Subject: [maker-devel] Query on Hardware requirement

Hi,

I am trying to assemble and analyse(bio-informatics) genome sequence of a
35 GB fungal genome. The raw data that has been generated from Illumina
sequencing is of  ~15 GB. Could you please suggest me the system (hardware)
requirement for installing and running Maker and ALLPATHS-LG sofrware for
the job?

Thank you
Pushplata Singh, PhD
Nanobiotechnology Centre
Biotechnology and Management of Bioresources Division
The Energy and Resources Institute
Darbari Seth Block , India Habitat Centre,Lodhi Road
New Delhi 110003 India
Phone +91 11 24682100 ext 2611
Fax +91 11 24682145





------------------------------------------------------------------------------------------------------------

Disclaimer:

The information contained in this e-mail is intended for the person or entity
to which it is addressed, and it may contain confidential and/or privileged
material. Any review or other use of this mail or taking any action based on it
by persons or entities other than the intended recipient is strictly prohibited.
If you receive this e-mail by mistake, please contact the sender, and delete all
copies of this mail.This e-mail has been scanned and verified by McAfee SaaS
Email Security, formerly MX Logic.

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org