[maker-devel] Long introns from Augustus

[Carson Holt]

Are these the ab intio calls that are merged or final MAKER models.

—Carson


On 3/6/14, 4:41 PM, "Shane Brubaker" <sbrubaker at solazyme.com> wrote:

>Hi, we have a very compact genome and we are getting a lot of fused gene
>models from running Augustus.  I am wondering if anyone has any advice
>about how to prevent introns above a certain cutoff from being created?
>
>I tried a couple of things, some settings in a probabilities file and
>also changing a long list of probabilities to another file that someone
>had suggested on a forum.  So far I don't really see any changes though.
>
>Any advice would be greatly appreciated.
>
>Thanks,
>Shane
>
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