[maker-devel] MAKER / RepeatRunner configuration issue

[Dave Messina]

Thanks for your quick reply, Carson.

I'm using BLAST+ version 2.2.28, and even after upgrading from MAKER 2.31
to 2.31.3, unfortunately I'm still seeing the same issue.

I've uploaded a new tarball containing the latest (failed) output on the
dpp sample data.

Any thoughts you have on how to resolve this would be great.


Thanks!
Dave




On Mon, May 5, 2014 at 11:53 AM, Carson Holt <carsonhh at gmail.com> wrote:

> Use BLAST+ version 2.2.28.  Also Make sure you are not using an old
> version of MAKER (2.31.3 is current).
>
> ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/
>
> --Carson
>
>
> From: Dave Messina <online at davemessina.com>
> Date: Monday, May 5, 2014 at 10:48 AM
> To: <maker-devel at yandell-lab.org>
> Subject: [maker-devel] MAKER / RepeatRunner configuration issue
>
> Hi,
>
> Even with the sample data, I'm getting a "Sequence contains no data" error
> from blastx during the RepeatRunner phase.
>
> I've uploaded a tarball with my run on the dpp sample data to the MAKER
> File Upload site (filename maker_test.tgz).
>
> Could you please take a look and give me your thoughts?
>
>
> Thanks!
> Dave
>
>
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20140505/16e074e7/attachment-0003.html>