[maker-devel] BioPerl Bio::Tools::CodonTable changes

[Fields, Christopher J]

Carson,

Just a note that we need to address a specific hack added last year in BioPerl for MAKER re: ‘strict’ codon tables.  I added a new one to the end of the list, not thinking that more would eventually be added, and that time has now come:

https://github.com/bioperl/bioperl-live/issues/90

I’m not sure how MAKER is setting the table, but if it’s by using the codon table # that will likely subtly break as it will now point to the new codon table from NCBI.

chris