[maker-devel] Fwd: AED plot

[Saranya Sankaranarayanan]

Great! It works now. Thanks a lot for the support!

Sincerely,
Saranya Sankaranarayanan
Master's Student, SoIC
Indiana University

On Mon, Nov 10, 2014 at 3:54 PM, Michael Campbell <
michael.s.campbell1 at gmail.com> wrote:

> Hi Saranya,
>
> I fixed the AED_cdf_generator.pl scrip and added it to the svn repository
> for MAKER so it will be available in the next MAKE release. If you are
> using the svn repository you can do an svn update and get the new version
> of the script in the MAKER bin. If not I've attached a copy of the script
> to this email (I removed the .pl extension to the file since some email
> servers will block .pl files). let me know if you have any more problems
> with it.
>
> Thanks,
> Mike
>
> On Sun, Nov 9, 2014 at 9:33 AM, Saranya Sankaranarayanan <
> sarasank at umail.iu.edu> wrote:
>
>> Hi Mike,
>>
>> Please find the gff3 file attached with this email. Thanks a lot for the
>> very prompt response.
>>
>> Sincerely,
>> Saranya Sankaranarayanan
>> Master's Student, SoIC
>> Indiana University
>>
>> On Sun, Nov 9, 2014 at 1:01 AM, Michael Campbell <
>> michael.s.campbell1 at gmail.com> wrote:
>>
>>> Hi Sranya,
>>>
>>> If you can send me a copy of your gff3 file I can look at it and see why
>>> you are getting the error. That is a pretty young accessory script so there
>>> may be something in your file that it has't seen before.
>>>
>>> Thanks,
>>> Mike
>>>
>>> On Sat, Nov 8, 2014 at 11:58 AM, Saranya Sankaranarayanan <
>>> sarasank at umail.iu.edu> wrote:
>>>
>>>> Hi Maker authors,
>>>>
>>>> I am new to using Maker. I have a few basic questions.
>>>>
>>>> I have the maker annotation complete and I ran the
>>>>
>>>> gff3_merge -n -d genome_master_datastore_index.log -  to create the
>>>> gff file
>>>>
>>>> After that, I used the script  AED_cdf_generator.pl to obtain the AED
>>>> plot, while I get the error:
>>>>
>>>>
>>>> Use of uninitialized value $total in division (/) at
>>>> ./AED_cdf_generator.pl line 43.
>>>> Illegal division by zero at ./AED_cdf_generator.pl line 43.
>>>>
>>>> I parsed my gff file as:
>>>> AED_cdf_generator.pl -b 0.025 maker.gff
>>>>
>>>> Could anyone please help me with this error? Thank you. It looks like
>>>> no value is parsed to the variable total, but I am not able to decipher why.
>>>>
>>>> Regards,
>>>> Saranya
>>>>
>>>>
>>>> _______________________________________________
>>>> maker-devel mailing list
>>>> maker-devel at box290.bluehost.com
>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>>
>>>>
>>>
>>>
>>> --
>>> Michael Campbell MS, RD.
>>> Doctoral Candidate
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ph:585-3543
>>>
>>>
>>
>
>
> --
> Michael Campbell MS, RD.
> Doctoral Candidate
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ph:585-3543
>
>
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