[maker-devel] Segmentation fault on exit

Justin Peyton cognitiveshrapnel at gmail.com
Wed Oct 8 11:52:48 MDT 2014 

Hello,
I am getting a segmentation fault on exit (below). I have read about
something similar to this involving hydra. I do no think that is the
situation here. I am running Maker 2.31.6 with openMPI and the -mca btl
^openib option to work around an infiniband installation (even though I
have no idea what it does). My understanding is that this error has no
effect on output because it happens after maker is finished. Can you
confirm this? Any ideas what may be causing it? Thank you in advance

Justin Peyton
The Ohio State University

Maker is now finished!!!



Start_time: 1412784571
End_time:   1412784747
Elapsed:    176
[n0617:27212] *** Process received signal ***
[n0617:27212] Signal: Segmentation fault (11)
[n0617:27212] Signal code: Address not mapped (1)
[n0617:27212] Failing at address: (nil)
[n0617:27212] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27212] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27212] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27212] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27212] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27212] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27212] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27212] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27212] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27212] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27212] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27212] [11] /usr/bin/perl() [0x400c59]
[n0617:27212] *** End of error message ***
[n0617:27207] *** Process received signal ***
[n0617:27207] Signal: Segmentation fault (11)
[n0617:27207] Signal code: Address not mapped (1)
[n0617:27207] Failing at address: (nil)
[n0617:27207] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27207] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27207] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27207] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27207] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27207] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27207] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27207] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27207] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27207] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27207] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27207] [11] /usr/bin/perl() [0x400c59]
[n0617:27207] *** End of error message ***
[n0617:27205] *** Process received signal ***
[n0617:27205] Signal: Segmentation fault (11)
[n0617:27205] Signal code: Address not mapped (1)
[n0617:27205] Failing at address: (nil)
[n0617:27205] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27205] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27205] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27205] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27205] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27205] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27205] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27205] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27205] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27205] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27205] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27205] [11] /usr/bin/perl() [0x400c59]
[n0617:27205] *** End of error message ***
[n0617:27209] *** Process received signal ***
[n0617:27209] Signal: Segmentation fault (11)
[n0617:27209] Signal code: Address not mapped (1)
[n0617:27209] Failing at address: (nil)
[n0617:27209] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27209] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27209] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27209] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27209] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27209] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27209] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27209] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27209] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27209] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27209] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27209] [11] /usr/bin/perl() [0x400c59]
[n0617:27209] *** End of error message ***
[n0617:27215] *** Process received signal ***
[n0617:27215] Signal: Segmentation fault (11)
[n0617:27215] Signal code: Address not mapped (1)
[n0617:27215] Failing at address: (nil)
[n0617:27215] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27215] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27215] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27215] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27215] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27215] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27215] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27215] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27215] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27215] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27215] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27215] [11] /usr/bin/perl() [0x400c59]
[n0617:27215] *** End of error message ***
[n0617:27216] *** Process received signal ***
[n0617:27216] Signal: Segmentation fault (11)
[n0617:27216] Signal code: Address not mapped (1)
[n0617:27216] Failing at address: (nil)
[n0617:27216] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27216] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27216] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27216] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27216] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27216] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27216] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27216] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27216] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27216] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27216] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27216] [11] /usr/bin/perl() [0x400c59]
[n0617:27216] *** End of error message ***
[n0617:27210] *** Process received signal ***
[n0617:27210] Signal: Segmentation fault (11)
[n0617:27210] Signal code: Address not mapped (1)
[n0617:27210] Failing at address: (nil)
[n0617:27210] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27210] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27210] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27210] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27210] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27210] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27210] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27210] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27210] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27210] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27210] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27210] [11] /usr/bin/perl() [0x400c59]
[n0617:27210] *** End of error message ***
[n0617:27217] *** Process received signal ***
[n0617:27217] Signal: Segmentation fault (11)
[n0617:27217] Signal code: Address not mapped (1)
[n0617:27217] Failing at address: (nil)
[n0617:27217] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27217] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27217] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27217] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27217] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27217] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27217] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27217] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27217] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27217] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27217] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27217] [11] /usr/bin/perl() [0x400c59]
[n0617:27217] *** End of error message ***
[n0617:27213] *** Process received signal ***
[n0617:27213] Signal: Segmentation fault (11)
[n0617:27213] Signal code: Address not mapped (1)
[n0617:27213] Failing at address: (nil)
[n0617:27213] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27213] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27213] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27213] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27213] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27213] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27213] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27213] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27213] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27213] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27213] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27213] [11] /usr/bin/perl() [0x400c59]
[n0617:27213] *** End of error message ***
[n0617:27208] *** Process received signal ***
[n0617:27208] Signal: Segmentation fault (11)
[n0617:27208] Signal code: Address not mapped (1)
[n0617:27208] Failing at address: (nil)
[n0617:27208] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27208] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27208] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27208] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27208] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27208] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27208] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27208] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27208] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27208] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27208] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27208] [11] /usr/bin/perl() [0x400c59]
[n0617:27208] *** End of error message ***
[n0617:27211] *** Process received signal ***
[n0617:27211] Signal: Segmentation fault (11)
[n0617:27211] Signal code: Address not mapped (1)
[n0617:27211] Failing at address: (nil)
[n0617:27211] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0617:27211] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0617:27211] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0617:27211] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0617:27211] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0617:27211] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0617:27211] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0617:27211] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0617:27211] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0617:27211] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0617:27211] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0617:27211] [11] /usr/bin/perl() [0x400c59]
[n0617:27211] *** End of error message ***
[n0628:09116] *** Process received signal ***
[n0628:09116] Signal: Segmentation fault (11)
[n0628:09116] Signal code: Address not mapped (1)
[n0628:09116] Failing at address: (nil)
[n0628:09113] *** Process received signal ***
[n0628:09113] Signal: Segmentation fault (11)
[n0628:09113] Signal code: Address not mapped (1)
[n0628:09113] Failing at address: (nil)
[n0628:09113] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0628:09113] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0628:09113] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0628:09113] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0628:09113] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0628:09113] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0628:09113] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0628:09113] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0628:09113] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0628:09113] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0628:09113] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0628:09113] [11] /usr/bin/perl() [0x400c59]
[n0628:09113] *** End of error message ***
[n0628:09116] [ 0] /lib64/libpthread.so.0() [0x39cc40f710]
[n0628:09116] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_pp_helem+0x3bd)
[0x39d0ca9ded]
[n0628:09116] [ 2]
/usr/lib64/perl5/CORE/libperl.so(Perl_runops_standard+0x16) [0x39d0ca4b06]
[n0628:09116] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_call_sv+0x4cf)
[0x39d0c4c5df]
[n0628:09116] [ 4] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_clear+0xb6)
[0x39d0cb8dd6]
[n0628:09116] [ 5] /usr/lib64/perl5/CORE/libperl.so(Perl_sv_free2+0x52)
[0x39d0cb95d2]
[n0628:09116] [ 6] /usr/lib64/perl5/CORE/libperl.so() [0x39d0cae5c1]
[n0628:09116] [ 7]
/usr/lib64/perl5/CORE/libperl.so(Perl_sv_clean_objs+0x21) [0x39d0cae621]
[n0628:09116] [ 8] /usr/lib64/perl5/CORE/libperl.so(perl_destruct+0x11d1)
[0x39d0c4e901]
[n0628:09116] [ 9] /usr/bin/perl(main+0xe1) [0x400e01]
[n0628:09116] [10] /lib64/libc.so.6(__libc_start_main+0xfd) [0x39cc01ed1d]
[n0628:09116] [11] /usr/bin/perl() [0x400c59]
[n0628:09116] *** End of error message ***
+ date
Wed Oct  8 12:12:28 EDT 2014
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