[maker-devel] MAKER error Failed while polishing proteins

[Sivaranjani Namasivayam]

Attaching the error file. There are a number of errors reported about the fasta file, but I see these errors for the other scaffolds too and I get predicitions and the run finished successfully , so I thought these errors might not be the reason..

Thanks,
Ranjani


________________________________
From: Carson Holt <carsonhh at gmail.com>
Sent: Thursday, October 23, 2014 3:20 PM
To: Sivaranjani Namasivayam
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] MAKER error Failed while polishing proteins

The causal error will be further up the error log. You may just want to send your capture STDERR file.

-Carson



On Oct 23, 2014, at 1:05 PM, Sivaranjani Namasivayam <ranjani at uga.edu<mailto:ranjani at uga.edu>> wrote:

Hi,

I get this error when I run MAKER

ERROR: Failed while polishing proteins
ERROR: Chunk failed at level:10, tier_type:3
FAILED CONTIG:scaffold00006

ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG:scaffold00006

Other scaffolds run fine, but this scaffold keeps failing. Would it mean something is wrong with the proteins in this scaffold?

Thanks,
Ranjani
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