[maker-devel] interpreting SNAP gene-stats output

[Sally Chang]

Hi all,
I was wondering if someone could help me make sure I am looking at these
results from running fathom -gene-stats on an annotation:

1049 sequences
0.245825 avg GC fraction (min=0.162446 max=0.431287)
5533 genes (plus=2760 minus=2773)
91 (0.016447) single-exon
5442 (0.983553) multi-exon
101.857010 mean exon (min=1 max=6534)
81.880493 mean intron (min=4 max=5486)

Are the 1049 sequences the actual number of contigs/sequences from your
assembly that MAKER ended up using? And is that 5533 genes the number of
genes it found on those contigs (and strand info?).

Thanks very much,
Sally Chang
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