[maker-devel] Fgenesh output to gff3 conversion

[Cook, Malcolm]

Hi,

I'm not sure what maker offers in this regard.  It's been some time since I've used it now.

Anyway, if it helps, some time ago I wrote a quick fgenesh2gff using BioPerl.

It is provided here.

You need a bioperl installation.

http://bio.perl.org/pipermail/bioperl-l/2006-July/022061.html

~Malcolm Cook

 >-----Original Message-----
 >From: maker-devel [mailto:maker-devel-bounces at yandell-lab.org] On Behalf Of Barry Moore
 >Sent: Thursday, September 04, 2014 12:40 PM
 >To: Anindyajit Banerjee
 >Cc: maker-devel at yandell-lab.org
 >Subject: Re: [maker-devel] Fgenesh output to gff3 conversion
 >
 >Hi Anindyajit,
 >
 >I'm forwarding you message along to the maker mailing list and devel team...
 >
 >B
 >
 >On Sep 4, 2014, at 8:37 AM, Anindyajit Banerjee <anindyajit at gmail.com> wrote:
 >
 >>
 >> Hi
 >>
 >> I am Anindyajit Banerjee, a research scholar from CSIR-IICB, India. I am trying to convert the fgenesh output to gff3 format for the
 >further input in EVM. However I am encountering the error while doing so. Could you suggest me any possible way to do so. I hereby
 >attach a test output for fgenesh
 >> test out put file for your understanding
 >> Please help
 >> --
 >> Regards,
 >>
 >> Anindyajit Banerjee
 >> Mobile: +919883333000.
 >>
 >>
 >>
 >>
 >>
 >>
 >>
 >>
 >> <fgenesh_output_test>
 >
 >
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