[maker-devel] maker-devel Digest, Vol 74, Issue 17

[Nguyen, Anh-Dao (NIH/NHGRI) [C]]

Thanks Carson. I ran MAKER on 30 CPUs. I will re-run it using 10 CPUs.


>
>Repeated gene/mRNA IDs can also be caused by gff3_passthrough when you are
>passing in GFF3 files with already assigned IDS (that may be used
>elsewhere).  Are you using GFF3 pass-trough?
>

I submitted est_gff=cufflinks.gff3 and pred_gff=fgenesh.gff3 when running
MAKER. However, I got 4 repeated mRNA ids as follows:

augustus_masked-c206700011.Contig3-processed-gene-0.3
augustus_masked-c206700011.Contig3-processed-gene-0.3-mRNA-1

snap_masked-c206500027.Contig3-processed-gene-0.26

snap_masked-c206500027.Contig3-processed-gene-0.26-mRNA-1

Anh-Dao