[maker-devel] non-overlapping predictions

[Carson Holt]

It's a naming issue.  The reference match/match_part features have 'abinit'
in the name while the non-overlapping fasta file has 'processed' in the name
of the fasta header. The easiest way to fix it is to just replaced
'processed' with 'abinit' in the terms you are searching for.  This was
supposed to be resolved already, but I'll see what's going on.  What version
of MAKER are you using?

--Carson




From:  "Mack, Brian" <Brian.Mack at ARS.USDA.GOV>
Date:  Monday, September 8, 2014 at 7:47 AM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] non-overlapping predictions

Hi,
 
I used IPRscan on the non-overlapping ab initio proteins and identified
additional predictions that I want to include in my final gff. I was trying
to follow the advice given in this thread
(http://gmod.827538.n3.nabble.com/Adding-non-overlapping-models-to-final-set
-td4043778.html) to pull out these predictions from the full Maker gff3 that
includes all the evidence, but it seems that none of the non-overlapping
predictions are in this gff3 file. Where would I find all of the predictions
including the non-overlapping predictions?
 
Thanks,
Brian




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