[maker-devel] Setting up database for any gff3 input

[Daniel Ence]

Hi Muriel, 

You can keep the result of your different runs in a gff3 file created. Then you can change the options of maker and rerun it on the same maker output directory with the new options. I believe that this should avoid  recreating the gff3 database from run to run. I hope that this answers your question. Please let us know if there was something I misunderstood. 

Thanks,
Daniel




> On Apr 15, 2015, at 3:49 AM, Muriel Gros-Balthazard <muriel.grosb at gmail.com> wrote:
> 
> Hello,
> 
> I try several runs of Maker, changing the options to check the differences in output.
> 
> I was wondering if I can avoid the « Setting up database for any gff3 input » step when repeating a run which different options but same inputs ?
> This step is very long since I have many gff3 files...
> 
> This database is in a folder of the run 1 that I could put in the output directory to skip that step for the run 2 ?
> 
> Thanks,
> 
> Muriel
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org