[maker-devel] Estimating the time maker runs looking at the STDERR file ?

[Daniel Ence]

Hi Muriel, The chunk size is set in the maker_opts.ctl file with the max_dna_len parameter. The number of chunks for your test contig is the length of the contig divided by max_dna_len + 1 for the remainder. If you know how long maker took to process one chunk, you can get the total time for the contig from there. 

~Daniel


> On Apr 15, 2015, at 9:04 AM, Muriel Gros-Balthazard <muriel.grosb at gmail.com> wrote:
> 
> Hello,
> I launched Maker on a single contig of the genome I am interested in.
> I was wondering if there is a way to estimate how long Maker requires to run on that contig, looking at the STDERR file ?
> For instance, I can see that it is now working on the 9th chunk (by « greping » chunk in this file).
> But can I know how many chunks ?
> Thanks a lot,
> 
> Muriel
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