[maker-devel] Error with maker_functional_gff

Ole Kristian Tørresen ole.toerresen at gmail.com
Mon Dec 14 12:21:11 MST 2015


Hi,
I'm trying to update my annotation with some functional annotations
with maker_functional_gff, but get this annoying error:
Can't use string ("") as a HASH ref while "strict refs" in use at
/cluster/software/VERSIONS/maker-2.31.8/bin/maker_functional_gff line 58,
<$IN> line 108947.

Line 108947 in the input gff is this:

LG08    maker   gene    13786695        13806565        .       -       .
    ID=GAMO_00029233;Name=GAMO_00029233;Alias=maker-LG08-snap-gene-46.343;

It seems like the regexp in line 55 in the maker_functional_gff script
doesn't pick up the ID, but I can't see any difference between that line
and other similar lines.

Any help to trace down this is really appreciated. Do you need any other
information?

Thank you.

Sincerely,

Ole Kristian Tørresen
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