[maker-devel] maker 2.31.8 segmentation fault when setting up GFF3 output and fasta chunks with mvapich2

[Hua Zhong]

Hello,

we are using maker (2.31.8) with mvapich2, but the program terminates with a segmentation fault while setting up GFF3 output and fasta chunks. We really have no idea what the problem was.

Below is the error message:

+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

setting up GFF3 output and fasta chunks

setting up GFF3 output and fasta chunks

setting up GFF3 output and fasta chunks

setting up GFF3 output and fasta chunks

setting up GFF3 output and fasta chunks

setting up GFF3 output and fasta chunks

[fpga04.cluster:mpi_rank_111][error_sighandler] Caught error: Segmentation fault (signal 11)

[fpga04.cluster:mpi_rank_107][error_sighandler] Caught error: Segmentation fault (signal 11)

Perl exited with active threads:

        1 running and unjoined

        0 finished and unjoined

        0 running and detached

[fpga04.cluster:mpi_rank_113][error_sighandler] Caught error: Segmentation fault (signal 11)

[fpga04.cluster:mpi_rank_115][error_sighandler] Caught error: Segmentation fault (signal 11)

[fpga04.cluster:mpi_rank_114][error_sighandler] Caught error: Segmentation fault (signal 11)

[fpga04.cluster:mpi_rank_105][error_sighandler] Caught error: Segmentation fault (signal 11)

[fpga04.cluster:mpi_rank_108][error_sighandler] Caught error: Segmentation fault (signal 11)

[fpga04.cluster:mpi_rank_110][error_sighandler] Caught error: Segmentation fault (signal 11)

[fpga04.cluster:mpi_rank_104][error_sighandler] Caught error: Segmentation fault (signal 11)

[fpga04.cluster:mpi_rank_106][error_sighandler] Caught error: Segmentation fault (signal 11)

+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

Best regards,

Hua
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