[maker-devel] Error with maker_functional_gff

[Daniel Ence]

Hi Ole, can you send a line for a gene feature that does work?


Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

On Dec 14, 2015, at 12:21 PM, Ole Kristian Tørresen <ole.toerresen at gmail.com<mailto:ole.toerresen at gmail.com>> wrote:

Hi,
I'm trying to update my annotation with some functional annotations with maker_functional_gff, but get this annoying error:
Can't use string ("") as a HASH ref while "strict refs" in use at /cluster/software/VERSIONS/maker-2.31.8/bin/maker_functional_gff line 58, <$IN> line 108947.

Line 108947 in the input gff is this:

LG08    maker   gene    13786695        13806565        .       -       .       ID=GAMO_00029233;Name=GAMO_00029233;Alias=maker-LG08-snap-gene-46.343;

It seems like the regexp in line 55 in the maker_functional_gff script doesn't pick up the ID, but I can't see any difference between that line and other similar lines.

Any help to trace down this is really appreciated. Do you need any other information?

Thank you.

Sincerely,

Ole Kristian Tørresen


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