[maker-devel] GFF and Dereferencing problem

[Hamid Ashrafi]

Hi,

 

After maker finishes its job it generates many files one of them is gff
file. I see the following in some of my gff files. It seems it is a
dereferencing problem. I am just wondering if affects my annotation.

 

Hamid

 

uti_cns_0004767 est2genome      match_part      856428  856485  3090    +
.
ID=uti_cns_0004767:hsp:8340:3.2.3.8;Parent=uti_cns_0004767:hit:4230:3.2.3

uti_cns_0004767 est2genome      match_part      856587  856938  3090    +
.
ID=uti_cns_0004767:hsp:8341:3.2.3.8;Parent=uti_cns_0004767:hit:4230:3.2.3

uti_cns_0004767 est2genome      match_part      857053  857201  3090    +
.
ID=uti_cns_0004767:hsp:8342:3.2.3.8;Parent=uti_cns_0004767:hit:4230:3.2.3

uti_cns_0004767 est2genome      match_part      859004  859041  3090    +
.
ID=uti_cns_0004767:hsp:8343:3.2.3.8;Parent=uti_cns_0004767:hit:4230:3.2.3

uti_cns_0004767 est2genome      expressed_sequence_match        878327
878771  1446    +       .
ID=uti_cns_0004767:hit:4231:3.2.3.8;Name=Sp_Illum_Trans_W

uti_cns_0004767 est2genome      match_part      878327  878771  1446    +
.
ID=uti_cns_0004767:hsp:8344:3.2.3.8;Parent=uti_cns_0004767:hit:4231:3.2.3

uti_cns_0004767 est2genome      expressed_sequence_match        884121
886610  2509    +       .
ID=uti_cns_0004767:hit:4232:3.2.3.8;Name=Sp_Illum_Trans_W

uti_cns_0004767 est2genome      match_part      884121  884195  2509    +
.
ID=uti_cns_0004767:hsp:8345:3.2.3.8;Parent=uti_cns_0004767:hit:4232:3.2.3

uti_cns_0004767 est2genome      match_part      886180  886610  2509    +
.
ID=uti_cns_0004767:hsp:8346:3.2.3.8;Parent=uti_cns_0004767:hit:4232:3.2.3

ARRAY(0x1b91f110)

ARRAY(0x1a686350)

ARRAY(0x1b06bba0)

ARRAY(0x1b931e10)

ARRAY(0x1b13f3a0)

ARRAY(0x1b6af650)

ARRAY(0x1b929600)

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