[maker-devel] functional annotation

[Michael Campbell]

Hi Xabier,

The FASTA at the end of the GFF3 file is the genome. For functional
annotation you want to use the XXXout.all.maker.proteins.fasta file. It
contains the protein sequences for your MAKER gene models.

Good luck,
Mike

On Fri, Jan 16, 2015 at 1:09 AM, Xabier Vázquez Campos <xvazquezc at gmail.com>
wrote:

> Hi,
>
> What file from the Maker output do you use for the functional annotation?
> The fasta part of the XXX.all.gff?
>
> I'll probably be using BLAST and InterProScan. I tested B2go (basic
> version), good stuff but it is annoyingly slow.
>
> Thank you
>
> --
> Xabier Vázquez Campos
> *PhD Candidate*
> Water Research Centre
> School of Civil and Environmental Engineering
> The University of New South Wales
> Sydney NSW 2052 AUSTRALIA
>
> _______________________________________________
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>
>


-- 
Michael Campbell MS, RD.
Doctoral Candidate
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
ph:585-3543
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