[maker-devel] Trouble with gmhmme3 setup

[Aaron McKenna]

Hi Maker-dev list,

I've just started with the Maker2 pipeline, but I seem to be stuck at the
gmhmme3 part.   The install script says this is optional:

**(OPTIONAL COMPONENTS)

1. Augustus 2.0 or higher. Download from
http://bioinf.uni-greifswald.de/augustus/
2. GeneMark-ES. Download from http://exon.biology.gatech.edu
...

but if don't list a path in my exe file I get:

ERROR: You have failed to provide a value for 'gmhmme3' in the control
files.

If I do provide a link to the latest (GeneMark.hmm eukaryotic, version
3.48) version I get the following error a little later in the run:

error in file format, /tmp/neZlIonRi_/4rlZBFukur_mod
ERROR: GeneMark Failed
--> rank=NA, hostname=parvati.grid.gs.washington.edu
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:0, tier_type:2

Has anyone seen this before?  Thanks for any info you have.

- Aaron
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