[maker-devel] Maker 2.31 fails with MPI.pm

[Ann Danowitz]

Hello Yandell maker gurus,

Installed Maker 2.31 with MPICH2 .
No errors with Build.PL and Build install
==============================================================================
STATUS MAKER v2.31.8
==============================================================================
PERL Dependencies: VERIFIED
External Programs: VERIFIED
External C Libraries: VERIFIED
MPI SUPPORT: ENABLED
MWAS Web Interface: DISABLED
MAKER PACKAGE: CONFIGURATION OK

but with the following command, maker fails:

dcopetti at bam:/opt/bam_processing/Dario/MAKER_mpi[4:21pm]> mpiexec -n 20
/opt/maker/bin/maker maker_opts_wg_bam_mpi.ctl maker_bopts_wg_bam_mpi.ctl
maker_exe_wg_bam_mpi.ctl

 at /opt/maker/bin/../perl/lib/Parallel/Application/MPI.pm line 236.
--> rank=NA, hostname=bam.genome.arizona.edu
    ...propagated at /usr/local/share/perl5/Inline/C.pm line 772.
--> rank=NA, hostname=bam.genome.arizona.edu
 at /opt/maker/bin/../perl/lib/Parallel/Application/MPI.pm line 256.
    Parallel::Application::MPI::_bind("/usr/lib64/openmpi/bin/mpicc",
"/usr/include", "/opt/maker/bin/../perl", "") called at
/opt/maker/bin/../perl/lib/Parallel/Application/MPI.pm line 213
    Parallel::Application::MPI::_load() called at
/opt/maker/bin/../perl/lib/Parallel/Application/MPI.pm line 74
    Parallel::Application::MPI::MPI_Init() called at /opt/maker/bin/maker
line 279

{line 279     stat = MPI_Init(&PL_origargc, &PL_origargv);}

make: *** No targets specified and no makefile found.  Stop.

A problem was encountered while attempting to compile and install your
Inline
C code. The command that failed was:
  make > out.make 2>&1

[root at bam ~]# more
/opt/maker/perl/build/Parallel/Application/MPI/out.make_install
Makefile:123: warning: NUL character seen; rest of line ignored
Makefile:123: *** missing separator.  Stop.

also from out.make in the same directory:
make: *** [MPI.c] mv: cannot stat `MPI.xsc': No such file or directory
make: *** [MPI.c] Error 1
 or directory
make: *** [MPI.c] Error 1

What values are not getting passed to MPI.pm?

Many thanks for any help!
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