[maker-devel] Maker failing a number of contigs when running tblastx or blastn

[Srividya Ramakrishnan]

​
 error.log.gz
<https://drive.google.com/file/d/0BxTwS_7TqV3GUVVYSTFPM3M0TDQ/edit?usp=drive_web>
​Hi ,

I am trying to run maker on a rice genome assembly. The assembly has about
1074 contigs and maker successfully runs on about 655 contigs and fails on
the rest of them. I ran a few times on the failed contigs changing the
number of tries , clean try option set to true and also increasing the
memory.  None of these options worked. Please help me figure  out the
problem with my maker run. I have attached the error file with this mail


Thanks

Srividya Ramakrishnan
Computational Science Analyst,
Cold Spring Harbor Laboratory,
1 Bungtown Rd,
Cold Spring Harbor , NY 11743​​
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