[maker-devel] Other GFF not passed through

[Shaun Jackman]

Hi, Carson.

I’m using other_gff to pass the following four-record GFF file of rRNA
annotations through to the final GFF file. The rRNA records appear in the
output of gff3_merge -s -n, but not when I add the -g option. Any thoughts
why they’ve gone missing? These rRNA features almost certainly overlap
repeat rRNA features discovered by RepeatMasker. Would that cause it? I’m
happy to send along whatever data files you’d find useful to reproduce the
issue.

Cheers,
Shaun

##gff-version 3
17    barrnap:0.5    rRNA    130358    131272    .    -    .
Name=16S_rRNA;product=16S ribosomal RNA (partial);note=aligned only 57
percent of the 16S ribosomal RNA
18    barrnap:0.5    rRNA    6238    7489    .    -    .
Name=12S_rRNA;product=12S ribosomal RNA
5    barrnap:0.5    rRNA    7    1246    .    -    .
Name=12S_rRNA;product=12S ribosomal RNA
6    barrnap:0.5    rRNA    449193    450443    .    +    .
Name=12S_rRNA;product=12S ribosomal RNA

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