[maker-devel] why no prediction

[陈文博]

Hi guys,

I come with a wired case that one region in genome has evidence, but no
gene prediction generated. Here are the detail.


[image: 内嵌图片 2]
color means:
pink: Augustus
light green: SNAP
dark pink: pred_gff
light yellow: cufflinks
darkest pink: EST alignment
dark yellow: protein alignment

In the region marked by red frame, there are predictions from Augustus and
pred_gff, also evidences from cufflinks, why there is no gene model
generated? I could find the gene model in the
"XXXX.all.maker.non_overlapping_ab_initio.transcripts.fasta" file. It is
wired because it did have evidence supported.

Could anyone know the reason?

Thanks very much!

Best,
Wenbo
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