[maker-devel] Augustus training for new species

hcma hcma at uci.edu
Wed Apr 27 19:04:29 MDT 2016


Hi,

I would like to use Maker to generate a set for training Augustus for a 
new species. The steps for training SNAP is well documented, but i am 
still confused as to how to train Augustus using the AugustusWeb.

I have used fathom and forge to generate 'export.ann' and 'export.dna'. 
So what i need to do next is to run zff2augustus_gbk.pl in the directory 
that has the export.ann and export.dna files?

Then i feed the train.gb file to  AugustusWeb?

Please advise.

Thanks
Karen




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