[maker-devel] Segmentation Fault

[Madolyn Macdonald]

Hi Maker,
I am trying to run Maker and got the following in my stderr.log file for
one of my scaffolds.

sh: line 1: 34865 Segmentation fault      (core dumped)
/usr/local/exonerate-2.2.0/bin/exonerate -q
/tmp/maker_kqNxYt/1/NP_001233663%2E1.for.11692140-11693047.1.fasta -t
/tmp/maker_kqNxYt/1/picr50.11692140-11693047.1.fasta -Q protein -T dna -m
protein2genome --softmasktarget --percent 20 --showcigar >
/tmp/maker_kqNxYt/1/picr50.11692140-11693047.NP_001233663%2E1.p.exonerate
Use of each() on hash after insertion without resetting hash iterator
results in undefined behavior, Perl interpreter: 0x1846010 at
/usr/lib64/perl5/vendor_perl/forks.pm line 1736.
Use of each() on hash after insertion without resetting hash iterator
results in undefined behavior, Perl interpreter: 0x1846010 at
/usr/lib64/perl5/vendor_perl/forks.pm line 1736.
ERROR: Exonerate failed
--> rank=1, hostname=biomix2.dbi.local
ERROR: Failed while polishing proteins
ERROR: Chunk failed at level:10, tier_type:3
FAILED CONTIG:picr50

I am running exonerate-2.2.0, anyone know if updating to 2.4.0 would help
with this issue?
Any other thoughts?
Thanks

-- 
Madolyn Stinner (formerly Madolyn MacDonald)
UDel Bioinformatics and Systems Biology, PhD student
RIT Alumnus 13'
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